Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 C 1.50699 * 109.46887 * 119.99598 * 2 1 3 5 5 C 1.38233 * 119.99962 * 120.00404 * 4 2 1 6 6 C 1.38234 * 120.00056 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99720 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47267 * 90.00141 * 8 7 6 10 10 H 1.08992 * 109.47135 * 54.99548 * 9 8 7 11 11 C 1.53000 * 109.46850 * 294.99696 * 9 8 7 12 12 C 1.53004 * 109.46799 * 174.99864 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99253 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47238 * 59.99702 * 20 18 16 22 22 H 1.48503 * 109.47230 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47102 * 299.99648 * 20 18 16 24 24 C 1.38232 * 120.00011 * 0.24984 * 7 6 5 25 25 C 1.38232 * 120.00097 * 300.02461 * 4 2 1 26 26 H 1.08994 * 109.47539 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47251 * 60.00632 * 1 2 3 28 28 H 1.09008 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47034 * 239.99880 * 2 1 3 30 30 H 1.08999 * 109.46904 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47166 * 299.99430 * 3 2 1 32 32 H 1.08996 * 109.47448 * 60.00133 * 3 2 1 33 33 H 1.07998 * 119.99891 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.99874 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.46864 * 329.99230 * 8 7 6 36 36 H 1.09004 * 109.46213 * 209.99989 * 8 7 6 37 37 H 1.08991 * 109.47406 * 60.00123 * 11 9 8 38 38 H 1.08998 * 109.46763 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.46807 * 300.00020 * 11 9 8 40 40 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 41 41 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 42 42 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 43 43 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 44 44 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 45 45 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 46 46 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 47 47 H 0.96999 * 119.99606 * 179.97438 * 19 18 16 48 48 H 1.08007 * 119.99875 * 179.72714 * 24 7 6 49 49 H 1.07998 * 120.00221 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8270 -1.8342 1.1038 6 6 3.2873 -2.4861 2.2325 7 6 2.9533 -2.0138 3.4880 8 6 3.4547 -2.7249 4.7185 9 6 4.8028 -2.1336 5.1355 10 1 4.7020 -1.0564 5.2668 11 6 5.8428 -2.4201 4.0506 12 6 5.2522 -2.7683 6.4532 13 7 6.4851 -2.1166 6.9150 14 6 6.2376 -0.7128 7.2697 15 6 7.0765 -2.8483 8.0432 16 6 8.4518 -2.3031 8.3301 17 1 8.8469 -1.4937 7.7340 18 6 9.2058 -2.8375 9.3533 19 7 8.7244 -3.8228 10.0792 20 14 10.9102 -2.1612 9.7092 21 1 10.8091 -0.7201 10.0530 22 1 11.5081 -2.9010 10.8497 23 1 11.7683 -2.3246 8.5083 24 6 2.1547 -0.8926 3.6147 25 6 1.6979 -0.2383 2.4860 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.0877 -2.2034 0.1229 34 1 3.9080 -3.3645 2.1335 35 1 3.5749 -3.7862 4.5011 36 1 2.7364 -2.5990 5.5287 37 1 5.5226 -1.9681 3.1119 38 1 6.8033 -1.9993 4.3479 39 1 5.9435 -3.4975 3.9193 40 1 5.4386 -3.8311 6.2996 41 1 4.4712 -2.6409 7.2028 42 1 7.1790 -0.2351 7.5411 43 1 5.5503 -0.6673 8.1145 44 1 5.7997 -0.1942 6.4168 45 1 6.4468 -2.7276 8.9246 46 1 7.1503 -3.9063 7.7915 47 1 9.2549 -4.1991 10.7989 48 1 1.8901 -0.5262 4.5957 49 1 1.0770 0.6398 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207931383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -19.705918 kcal Electronic energy + Delta-G solvation = -22683.831137 eV Core-core repulsion = 19608.798331 eV Total energy + Delta-G solvation = -3075.032806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69837 -38.99943 -36.98196 -35.31295 -34.23160 -31.83313 -31.03813 -29.19643 -28.02907 -27.95149 -27.39144 -25.62862 -23.74935 -23.27844 -22.08392 -20.73429 -20.61514 -18.50739 -17.37796 -16.78536 -16.45524 -16.26536 -16.10655 -15.76282 -15.38629 -14.98744 -14.62466 -14.57229 -14.45559 -14.18643 -14.07091 -13.87532 -13.46549 -13.24416 -13.09780 -12.89861 -12.82205 -12.72126 -12.57625 -12.54317 -12.38950 -12.14031 -12.04945 -12.02116 -11.79427 -11.71900 -11.47196 -11.44756 -11.35267 -11.05588 -10.61246 -9.72601 -9.29727 -8.97558 -8.20281 -6.30520 0.50271 0.58192 1.40560 1.44083 1.51971 2.40278 2.88557 3.11775 3.37140 3.77213 3.85026 3.93967 4.01651 4.21040 4.24412 4.31696 4.36038 4.38259 4.49941 4.58229 4.59063 4.64979 4.68223 4.75260 4.81200 4.83213 4.86380 4.94472 5.01088 5.01952 5.05211 5.10466 5.12438 5.17260 5.19791 5.26772 5.30690 5.32165 5.38620 5.41317 5.46659 5.58032 5.62985 5.65657 5.81875 5.84693 6.05770 6.20682 6.35009 6.66481 6.85747 7.39080 8.90647 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.002525 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.020263 B =11086.339656 C =11292.767746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.071 4.071 9 C -0.067 4.067 10 H 0.068 0.932 11 C -0.130 4.130 12 C 0.060 3.940 13 N -0.544 5.544 14 C 0.041 3.959 15 C 0.208 3.792 16 C -0.523 4.523 17 H 0.063 0.937 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.127 4.127 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.006 0.994 44 H 0.078 0.922 45 H -0.041 1.041 46 H 0.002 0.998 47 H 0.264 0.736 48 H 0.125 0.875 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 7.663 -20.726 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.088 4.088 5 C -0.144 4.144 6 C -0.138 4.138 7 C -0.085 4.085 8 C -0.109 4.109 9 C -0.086 4.086 10 H 0.086 0.914 11 C -0.187 4.187 12 C -0.068 4.068 13 N -0.268 5.268 14 C -0.107 4.107 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.145 4.145 25 C -0.137 4.137 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.025 0.975 44 H 0.097 0.903 45 H -0.023 1.023 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.143 0.857 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.581 7.540 -20.964 27.772 hybrid contribution 0.396 -0.160 1.523 1.582 sum -16.184 7.380 -19.442 26.351 Atomic orbital electron populations 1.21838 0.93747 1.01845 1.02435 1.20153 0.96389 0.96121 0.94740 1.21847 1.00810 0.94927 1.02433 1.20079 0.97723 0.95805 0.95238 1.21267 0.98307 0.95899 0.98949 1.21202 0.99984 1.00580 0.92035 1.19874 0.97580 0.96283 0.94807 1.20593 0.95707 0.99511 0.95071 1.20990 0.94328 0.99727 0.93549 0.91413 1.21666 0.98492 1.01006 0.97524 1.22178 0.90206 0.98361 0.96045 1.61997 1.25674 1.02762 1.36331 1.22222 1.00028 0.89906 0.98546 1.19377 0.93630 0.92841 0.86005 1.21443 1.00995 1.18520 1.15174 0.91910 1.25948 1.02838 0.95334 0.95751 1.70086 1.39497 1.26677 1.21330 0.85419 0.78781 0.78545 0.77768 1.19215 1.20815 1.19296 1.21211 0.98364 0.95696 0.99232 1.21103 1.00533 1.00224 0.91877 0.92540 0.91236 0.93043 0.90039 0.93309 0.91194 0.92558 0.84896 0.85598 0.90647 0.90882 0.92152 0.93613 0.93269 0.92342 0.96212 0.92612 0.97498 0.90312 1.02311 0.98009 0.92699 0.85730 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.01 71.98 0.65 -0.97 16 2 C -0.06 -0.74 3.09 -11.54 -0.04 -0.78 16 3 C -0.14 -1.77 9.01 71.98 0.65 -1.12 16 4 C -0.09 -1.57 4.78 -19.87 -0.09 -1.67 16 5 C -0.13 -2.36 9.67 22.27 0.22 -2.15 16 6 C -0.12 -2.50 7.96 22.27 0.18 -2.33 16 7 C -0.09 -1.90 4.71 -19.87 -0.09 -2.00 16 8 C -0.07 -1.68 4.84 29.85 0.14 -1.53 16 9 C -0.07 -1.92 2.30 -10.79 -0.02 -1.95 16 10 H 0.07 1.97 6.26 -2.39 -0.01 1.95 16 11 C -0.13 -3.74 8.65 71.98 0.62 -3.12 16 12 C 0.06 2.20 4.35 86.30 0.38 2.57 16 13 N -0.54 -24.12 4.21 -927.04 -3.90 -28.02 16 14 C 0.04 1.64 9.17 127.69 1.17 2.81 16 15 C 0.21 11.44 4.72 85.55 0.40 11.84 16 16 C -0.52 -30.34 8.52 25.60 0.22 -30.12 16 17 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 19 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 20 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 C -0.13 -2.66 9.70 22.27 0.22 -2.45 16 25 C -0.12 -2.23 8.71 22.27 0.19 -2.04 16 26 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.08 0.98 7.88 -2.39 -0.02 0.96 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.70 7.39 -2.39 -0.02 0.69 16 33 H 0.13 1.98 7.95 -2.91 -0.02 1.96 16 34 H 0.13 2.42 8.04 -2.91 -0.02 2.40 16 35 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.07 1.65 8.08 -2.38 -0.02 1.63 16 37 H 0.06 1.54 6.27 -2.39 -0.01 1.53 16 38 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 41 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 42 H 0.06 2.37 6.86 -2.39 -0.02 2.35 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.08 2.60 6.21 -2.38 -0.01 2.59 16 45 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 46 H 0.00 0.11 7.93 -2.39 -0.02 0.09 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.13 1.99 7.10 -2.91 -0.02 1.97 16 Total: -1.00 -64.82 382.68 4.53 -60.29 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.87 Total: 12.36 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 5.25 Total: -34.57 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.61 Total: -85.07 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.82 4.53 -60.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207931383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.586 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds