Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99931 * 2 1 4 4 C 1.50702 * 119.99772 * 179.97438 * 2 1 3 5 5 H 1.08993 * 109.64149 * 0.02562 * 4 2 1 6 6 C 1.53018 * 109.64131 * 239.57905 * 4 2 1 7 7 C 1.50551 * 109.89113 * 190.84111 * 6 4 2 8 8 C 1.29445 * 124.15573 * 17.00198 * 7 6 4 9 9 C 1.50707 * 117.96154 * 179.61029 * 8 7 6 10 10 N 1.46898 * 109.47073 * 94.55432 * 9 8 7 11 11 C 1.46848 * 111.00075 * 311.26099 * 10 9 8 12 12 C 1.53039 * 109.52504 * 185.83988 * 11 10 9 13 13 C 1.53118 * 109.27741 * 300.82067 * 12 11 10 14 14 C 1.53121 * 109.16103 * 57.65331 * 13 12 11 15 15 H 1.08993 * 109.50378 * 62.28441 * 14 13 12 16 16 C 1.50702 * 109.50572 * 182.40689 * 14 13 12 17 17 H 1.08002 * 120.00154 * 119.79766 * 16 14 13 18 18 C 1.37876 * 119.99589 * 299.80650 * 16 14 13 19 19 N 1.31515 * 120.00279 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47485 * 119.99457 * 20 18 16 23 23 H 1.48498 * 109.46979 * 239.99665 * 20 18 16 24 24 C 1.46839 * 110.99807 * 75.46739 * 10 9 8 25 25 C 1.50065 * 124.07876 * 359.58931 * 8 7 6 26 26 C 1.53024 * 110.14495 * 17.12842 * 25 8 7 27 27 H 1.07997 * 119.99955 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99663 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47427 * 239.99673 * 3 2 1 30 30 H 1.08999 * 109.47374 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47030 * 119.99582 * 3 2 1 32 32 H 1.09006 * 109.36130 * 310.87544 * 6 4 2 33 33 H 1.09002 * 109.36312 * 70.46582 * 6 4 2 34 34 H 1.08000 * 117.87823 * 197.03464 * 7 6 4 35 35 H 1.08998 * 109.46911 * 214.55506 * 9 8 7 36 36 H 1.09003 * 109.46594 * 334.55581 * 9 8 7 37 37 H 1.09005 * 109.46053 * 305.85528 * 11 10 9 38 38 H 1.08996 * 109.46332 * 65.82321 * 11 10 9 39 39 H 1.08997 * 109.50346 * 180.87620 * 12 11 10 40 40 H 1.09005 * 109.53120 * 60.78019 * 12 11 10 41 41 H 1.09005 * 109.52082 * 297.75263 * 13 12 11 42 42 H 1.08997 * 109.57737 * 177.58822 * 13 12 11 43 43 H 0.96996 * 120.00404 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46584 * 294.17589 * 24 10 9 45 45 H 1.08999 * 109.46265 * 54.16050 * 24 10 9 46 46 H 1.09002 * 109.35855 * 256.92755 * 25 8 7 47 47 H 1.08996 * 109.36139 * 137.33729 * 25 8 7 48 48 H 1.09006 * 109.63931 * 190.88067 * 26 25 8 49 49 H 1.09001 * 109.64165 * 70.25240 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3576 -2.1357 0.0005 6 6 2.9526 -1.3852 1.2434 7 6 3.8989 -2.5499 1.1220 8 6 4.1663 -3.1562 0.0101 9 6 5.1436 -4.3028 0.0478 10 7 4.4091 -5.5680 0.1807 11 6 3.4160 -5.4892 1.2595 12 6 2.7744 -6.8633 1.4655 13 6 2.1055 -7.3092 0.1623 14 6 3.1514 -7.3364 -0.9557 15 1 3.9245 -8.0653 -0.7131 16 6 2.4894 -7.7174 -2.2549 17 1 2.5155 -7.0378 -3.0939 18 6 1.8502 -8.9334 -2.3722 19 7 1.8187 -9.7610 -1.3506 20 14 1.0303 -9.4060 -3.9827 21 1 1.2071 -8.3096 -4.9686 22 1 1.6501 -10.6490 -4.5078 23 1 -0.4187 -9.6347 -3.7520 24 6 3.7821 -5.9485 -1.0914 25 6 3.5635 -2.7887 -1.3141 26 6 2.9548 -1.3865 -1.2452 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 2.6902 1.3628 -0.8899 30 1 1.3552 2.1336 0.0005 31 1 2.6901 1.3628 0.8900 32 1 3.5256 -0.4627 1.3378 33 1 2.3276 -1.5120 2.1273 34 1 4.3846 -2.9016 2.0202 35 1 5.7249 -4.3152 -0.8742 36 1 5.8141 -4.1808 0.8985 37 1 3.9055 -5.1751 2.1815 38 1 2.6462 -4.7653 0.9924 39 1 2.0263 -6.8008 2.2557 40 1 3.5412 -7.5851 1.7465 41 1 1.3120 -6.6087 -0.0981 42 1 1.6837 -8.3061 0.2908 43 1 1.3694 -10.6166 -1.4333 44 1 3.0105 -5.2224 -1.3476 45 1 4.5374 -5.9684 -1.8770 46 1 2.7853 -3.5082 -1.5690 47 1 4.3372 -2.8094 -2.0816 48 1 2.3556 -1.2029 -2.1371 49 1 3.7505 -0.6447 -1.1755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208176884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = 7.641060 kcal Electronic energy + Delta-G solvation = -24166.826989 eV Core-core repulsion = 21092.980038 eV Total energy + Delta-G solvation = -3073.846952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70820 -37.92395 -35.42793 -33.48657 -31.88769 -30.91237 -29.82602 -29.49940 -27.53652 -25.65965 -24.93612 -23.26641 -22.51071 -21.43345 -20.87105 -18.53435 -18.46590 -17.55447 -16.35186 -15.66846 -14.93724 -14.89455 -14.58872 -14.30309 -14.23278 -13.86134 -13.65463 -13.31345 -13.17895 -12.83417 -12.66198 -12.50432 -12.26667 -12.19132 -11.92161 -11.69500 -11.59159 -11.45275 -11.09489 -10.94824 -10.74027 -10.65186 -10.58407 -10.48285 -10.19669 -10.02941 -9.80020 -9.41390 -9.12271 -9.01856 -8.66121 -8.58786 -8.27406 -7.53176 -5.94516 -4.00489 2.11595 2.39060 3.31264 3.39390 3.42851 4.44115 4.52296 4.67565 4.75445 4.77939 5.01852 5.08346 5.22809 5.33374 5.35688 5.40268 5.46726 5.52670 5.57980 5.64568 5.69321 5.77020 5.80001 5.80796 5.92182 5.95814 6.00225 6.05899 6.14362 6.15522 6.18188 6.29690 6.37603 6.53678 6.55088 6.58161 6.70503 6.78495 6.82204 6.85497 7.02997 7.15180 7.27546 7.45487 7.73928 7.79144 7.88841 8.13070 8.21737 8.52171 9.04019 9.63724 11.11509 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.004231 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.237049 B = 6616.853234 C = 7303.089858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.054 4.054 5 H 0.077 0.923 6 C -0.075 4.075 7 C -0.159 4.159 8 C -0.139 4.139 9 C 0.082 3.918 10 N -0.528 5.528 11 C 0.065 3.935 12 C -0.119 4.119 13 C -0.109 4.109 14 C 0.054 3.946 15 H 0.032 0.968 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.063 3.937 25 C -0.088 4.088 26 C -0.106 4.106 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.258 0.742 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 18.666 4.821 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.117 4.117 3 C -0.176 4.176 4 C -0.073 4.073 5 H 0.095 0.905 6 C -0.112 4.112 7 C -0.178 4.178 8 C -0.141 4.141 9 C -0.046 4.046 10 N -0.251 5.251 11 C -0.063 4.063 12 C -0.157 4.157 13 C -0.147 4.147 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.063 4.063 25 C -0.125 4.125 26 C -0.144 4.144 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.365 18.088 4.985 18.911 hybrid contribution -1.147 0.267 -1.012 1.553 sum 1.218 18.355 3.973 18.820 Atomic orbital electron populations 1.23736 0.95199 1.01757 1.03015 1.21749 0.95242 0.95568 0.99097 1.20869 1.00232 0.94272 1.02190 1.20343 0.96769 0.94604 0.95557 0.90463 1.20486 0.96321 0.97054 0.97369 1.21925 1.00473 0.98024 0.97398 1.21630 0.99740 0.97640 0.95104 1.21453 0.94830 0.86345 1.01946 1.62371 1.28486 1.26909 1.07313 1.22031 0.93223 0.97651 0.93434 1.21695 0.98913 0.95722 0.99357 1.21625 0.98204 1.02042 0.92798 1.18675 0.93743 0.90121 0.93967 0.94946 1.21189 1.34412 1.01890 0.97634 0.92865 1.24931 0.96269 0.96416 0.96219 1.69905 1.43830 1.09227 1.29760 0.86602 0.79179 0.78428 0.84168 1.19873 1.21052 1.21133 1.22435 0.96261 0.99308 0.88339 1.20580 1.00319 0.96606 0.94974 1.21595 0.98502 0.97088 0.97169 0.88704 0.88467 0.91553 0.92288 0.91583 0.91139 0.91444 0.88092 0.90933 0.91185 0.92882 0.95163 0.93745 0.92288 0.95338 0.89265 0.93167 0.95563 0.92603 0.90036 0.91096 0.91800 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 13.93 29.01 0.40 -1.61 16 2 C -0.12 -1.19 4.89 -101.07 -0.49 -1.68 16 3 C -0.12 -0.99 9.48 36.00 0.34 -0.65 16 4 C -0.05 -0.62 2.40 -91.56 -0.22 -0.84 16 5 H 0.08 1.03 7.78 -51.93 -0.40 0.62 16 6 C -0.08 -0.83 5.43 -27.95 -0.15 -0.98 16 7 C -0.16 -2.00 7.91 -35.67 -0.28 -2.28 16 8 C -0.14 -1.92 3.88 -100.94 -0.39 -2.31 16 9 C 0.08 1.24 5.55 -4.97 -0.03 1.22 16 10 N -0.53 -9.81 4.86 -236.11 -1.15 -10.95 16 11 C 0.06 1.16 4.26 -3.83 -0.02 1.14 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 14 C 0.05 1.35 2.26 -91.68 -0.21 1.15 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.51 -14.10 8.56 -34.44 -0.29 -14.40 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.54 11.36 55.43 0.63 -24.91 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.06 1.34 4.25 -3.83 -0.02 1.32 16 25 C -0.09 -1.19 5.20 -28.18 -0.15 -1.33 16 26 C -0.11 -1.22 4.92 -26.51 -0.13 -1.35 16 27 H 0.09 0.82 7.83 -52.49 -0.41 0.41 16 28 H 0.10 1.02 7.84 -52.48 -0.41 0.60 16 29 H 0.07 0.53 7.61 -51.93 -0.40 0.14 16 30 H 0.06 0.44 7.78 -51.93 -0.40 0.03 16 31 H 0.07 0.51 7.10 -51.93 -0.37 0.14 16 32 H 0.07 0.70 6.77 -51.93 -0.35 0.35 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.25 7.51 -52.49 -0.39 0.85 16 35 H 0.07 1.07 7.82 -51.93 -0.41 0.67 16 36 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 37 H 0.05 0.86 7.85 -51.93 -0.41 0.45 16 38 H 0.03 0.56 6.66 -51.93 -0.35 0.21 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.56 5.44 -51.93 -0.28 0.27 16 45 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 46 H 0.08 1.29 6.05 -51.93 -0.31 0.97 16 47 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.67 7.71 -51.93 -0.40 0.27 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -27.97 363.15 -11.02 -39.00 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.94 Total: 1.31 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.02 Total: -26.26 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.52 Total: -35.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.97 -11.02 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208176884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.638 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds