Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99931 * 2 1 4 4 C 1.50702 * 119.99772 * 179.97438 * 2 1 3 5 5 H 1.08993 * 109.64149 * 0.02562 * 4 2 1 6 6 C 1.53018 * 109.64131 * 239.57905 * 4 2 1 7 7 C 1.50551 * 109.89113 * 190.84111 * 6 4 2 8 8 C 1.29445 * 124.15573 * 17.00198 * 7 6 4 9 9 C 1.50707 * 117.96154 * 179.61029 * 8 7 6 10 10 N 1.46898 * 109.47073 * 94.55432 * 9 8 7 11 11 C 1.46848 * 111.00075 * 311.26099 * 10 9 8 12 12 C 1.53039 * 109.52504 * 185.83988 * 11 10 9 13 13 C 1.53118 * 109.27741 * 300.82067 * 12 11 10 14 14 C 1.53121 * 109.16103 * 57.65331 * 13 12 11 15 15 H 1.08993 * 109.50378 * 62.28441 * 14 13 12 16 16 C 1.50702 * 109.50572 * 182.40689 * 14 13 12 17 17 H 1.08002 * 120.00154 * 119.79766 * 16 14 13 18 18 C 1.37876 * 119.99589 * 299.80650 * 16 14 13 19 19 N 1.31515 * 120.00279 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47485 * 119.99457 * 20 18 16 23 23 H 1.48498 * 109.46979 * 239.99665 * 20 18 16 24 24 C 1.46839 * 110.99807 * 75.46739 * 10 9 8 25 25 C 1.50065 * 124.07876 * 359.58931 * 8 7 6 26 26 C 1.53024 * 110.14495 * 17.12842 * 25 8 7 27 27 H 1.07997 * 119.99955 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99663 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47427 * 239.99673 * 3 2 1 30 30 H 1.08999 * 109.47374 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47030 * 119.99582 * 3 2 1 32 32 H 1.09006 * 109.36130 * 310.87544 * 6 4 2 33 33 H 1.09002 * 109.36312 * 70.46582 * 6 4 2 34 34 H 1.08000 * 117.87823 * 197.03464 * 7 6 4 35 35 H 1.08998 * 109.46911 * 214.55506 * 9 8 7 36 36 H 1.09003 * 109.46594 * 334.55581 * 9 8 7 37 37 H 1.09005 * 109.46053 * 305.85528 * 11 10 9 38 38 H 1.08996 * 109.46332 * 65.82321 * 11 10 9 39 39 H 1.08997 * 109.50346 * 180.87620 * 12 11 10 40 40 H 1.09005 * 109.53120 * 60.78019 * 12 11 10 41 41 H 1.09005 * 109.52082 * 297.75263 * 13 12 11 42 42 H 1.08997 * 109.57737 * 177.58822 * 13 12 11 43 43 H 0.96996 * 120.00404 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46584 * 294.17589 * 24 10 9 45 45 H 1.08999 * 109.46265 * 54.16050 * 24 10 9 46 46 H 1.09002 * 109.35855 * 256.92755 * 25 8 7 47 47 H 1.08996 * 109.36139 * 137.33729 * 25 8 7 48 48 H 1.09006 * 109.63931 * 190.88067 * 26 25 8 49 49 H 1.09001 * 109.64165 * 70.25240 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3576 -2.1357 0.0005 6 6 2.9526 -1.3852 1.2434 7 6 3.8989 -2.5499 1.1220 8 6 4.1663 -3.1562 0.0101 9 6 5.1436 -4.3028 0.0478 10 7 4.4091 -5.5680 0.1807 11 6 3.4160 -5.4892 1.2595 12 6 2.7744 -6.8633 1.4655 13 6 2.1055 -7.3092 0.1623 14 6 3.1514 -7.3364 -0.9557 15 1 3.9245 -8.0653 -0.7131 16 6 2.4894 -7.7174 -2.2549 17 1 2.5155 -7.0378 -3.0939 18 6 1.8502 -8.9334 -2.3722 19 7 1.8187 -9.7610 -1.3506 20 14 1.0303 -9.4060 -3.9827 21 1 1.2071 -8.3096 -4.9686 22 1 1.6501 -10.6490 -4.5078 23 1 -0.4187 -9.6347 -3.7520 24 6 3.7821 -5.9485 -1.0914 25 6 3.5635 -2.7887 -1.3141 26 6 2.9548 -1.3865 -1.2452 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 2.6902 1.3628 -0.8899 30 1 1.3552 2.1336 0.0005 31 1 2.6901 1.3628 0.8900 32 1 3.5256 -0.4627 1.3378 33 1 2.3276 -1.5120 2.1273 34 1 4.3846 -2.9016 2.0202 35 1 5.7249 -4.3152 -0.8742 36 1 5.8141 -4.1808 0.8985 37 1 3.9055 -5.1751 2.1815 38 1 2.6462 -4.7653 0.9924 39 1 2.0263 -6.8008 2.2557 40 1 3.5412 -7.5851 1.7465 41 1 1.3120 -6.6087 -0.0981 42 1 1.6837 -8.3061 0.2908 43 1 1.3694 -10.6166 -1.4333 44 1 3.0105 -5.2224 -1.3476 45 1 4.5374 -5.9684 -1.8770 46 1 2.7853 -3.5082 -1.5690 47 1 4.3372 -2.8094 -2.0816 48 1 2.3556 -1.2029 -2.1371 49 1 3.7505 -0.6447 -1.1755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208176884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -5.608380 kcal Electronic energy + Delta-G solvation = -24167.401528 eV Core-core repulsion = 21092.980038 eV Total energy + Delta-G solvation = -3074.421491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87862 -39.23689 -36.64189 -35.11095 -33.52564 -32.09377 -31.37604 -30.78371 -28.20456 -26.99698 -26.90579 -24.37099 -23.82288 -22.93441 -22.36148 -20.21816 -19.34601 -18.66486 -18.30308 -16.87502 -16.58173 -16.04680 -15.95350 -15.81486 -15.24756 -14.99812 -14.91820 -14.57485 -14.34153 -14.24560 -14.02041 -13.91208 -13.57204 -13.32425 -13.13599 -12.90818 -12.83131 -12.72803 -12.59221 -12.51683 -12.42728 -12.12544 -11.81690 -11.74492 -11.59262 -11.45680 -11.39105 -11.11658 -10.84743 -10.65735 -10.38280 -9.91617 -9.67126 -8.99489 -8.08264 -6.22326 1.29224 1.38837 1.39570 1.40626 1.51770 2.42258 3.18618 3.26341 3.65388 3.78023 3.84028 4.10102 4.20162 4.21809 4.26665 4.31754 4.39299 4.43139 4.54551 4.58646 4.63857 4.67674 4.71805 4.81431 4.82714 4.84289 4.92414 4.95966 4.97048 4.98983 5.04453 5.09285 5.12787 5.13897 5.17443 5.21588 5.24899 5.39487 5.42128 5.52165 5.63271 5.72674 5.77713 5.96470 6.02465 6.09089 6.15107 6.24190 6.40719 6.48432 6.90834 7.45553 8.96656 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.004231 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.237049 B = 6616.853234 C = 7303.089858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.118 4.118 4 C -0.054 4.054 5 H 0.051 0.949 6 C -0.074 4.074 7 C -0.143 4.143 8 C -0.157 4.157 9 C 0.084 3.916 10 N -0.540 5.540 11 C 0.074 3.926 12 C -0.114 4.114 13 C -0.100 4.100 14 C 0.052 3.948 15 H -0.006 1.006 16 C -0.534 4.534 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.081 3.919 25 C -0.086 4.086 26 C -0.099 4.099 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.025 0.975 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 21.128 5.425 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.120 4.120 3 C -0.174 4.174 4 C -0.072 4.072 5 H 0.069 0.931 6 C -0.111 4.111 7 C -0.162 4.162 8 C -0.159 4.159 9 C -0.043 4.043 10 N -0.262 5.262 11 C -0.054 4.054 12 C -0.152 4.152 13 C -0.138 4.138 14 C 0.033 3.967 15 H 0.012 0.988 16 C -0.572 4.572 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.046 4.046 25 C -0.123 4.123 26 C -0.137 4.137 27 H 0.129 0.871 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.728 20.565 5.592 21.486 hybrid contribution -1.247 -0.506 -1.164 1.779 sum 1.481 20.059 4.428 20.596 Atomic orbital electron populations 1.23845 0.95451 1.02019 1.03170 1.21831 0.95299 0.95799 0.99021 1.20896 1.00442 0.93262 1.02804 1.20285 0.96473 0.94592 0.95870 0.93052 1.20531 0.96144 0.97254 0.97160 1.22155 0.99435 0.97583 0.97066 1.21476 1.00588 0.98173 0.95635 1.21490 0.94852 0.85136 1.02847 1.62294 1.28300 1.29686 1.05964 1.21956 0.93237 0.95862 0.94349 1.21623 0.99040 0.96904 0.97587 1.21417 0.97736 0.99952 0.94744 1.18603 0.93036 0.91498 0.93587 0.98824 1.21544 1.34841 1.02262 0.98594 0.93176 1.25714 0.96844 0.96397 0.99504 1.70045 1.44418 1.09498 1.31581 0.85591 0.78159 0.78190 0.80234 1.19170 1.20531 1.20628 1.22057 0.95894 0.96832 0.89841 1.20506 0.99487 0.97084 0.95200 1.21545 0.98795 0.96079 0.97234 0.87145 0.89642 0.91131 0.91275 0.90638 0.89090 0.90903 0.87142 0.90964 0.89291 0.89989 0.95374 0.91591 0.93228 0.96331 0.92575 0.93104 0.95720 0.93166 0.93126 0.90983 0.91982 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.91 13.93 67.78 0.94 -2.96 16 2 C -0.12 -2.19 4.89 -16.49 -0.08 -2.27 16 3 C -0.12 -1.59 9.48 71.23 0.68 -0.92 16 4 C -0.05 -1.15 2.40 -11.40 -0.03 -1.17 16 5 H 0.05 1.36 7.78 -2.39 -0.02 1.34 16 6 C -0.07 -1.42 5.43 29.81 0.16 -1.26 16 7 C -0.14 -3.19 7.91 27.19 0.22 -2.98 16 8 C -0.16 -4.05 3.88 -15.10 -0.06 -4.11 16 9 C 0.08 2.40 5.55 85.56 0.47 2.87 16 10 N -0.54 -19.71 4.86 -900.91 -4.38 -24.08 16 11 C 0.07 2.54 4.26 86.33 0.37 2.91 16 12 C -0.11 -4.55 6.09 30.65 0.19 -4.37 16 13 C -0.10 -4.98 5.03 30.67 0.15 -4.83 16 14 C 0.05 2.71 2.26 -11.48 -0.03 2.68 16 15 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 16 C -0.53 -30.36 8.56 25.60 0.22 -30.14 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -54.33 11.36 21.45 0.24 -54.09 16 20 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.08 3.52 4.25 86.33 0.37 3.89 16 25 C -0.09 -2.27 5.20 29.66 0.15 -2.11 16 26 C -0.10 -2.13 4.92 30.73 0.15 -1.98 16 27 H 0.11 1.69 7.83 -2.91 -0.02 1.67 16 28 H 0.09 1.77 7.84 -2.91 -0.02 1.75 16 29 H 0.07 0.91 7.61 -2.39 -0.02 0.89 16 30 H 0.07 0.80 7.78 -2.39 -0.02 0.79 16 31 H 0.07 0.89 7.10 -2.39 -0.02 0.87 16 32 H 0.09 1.43 6.77 -2.38 -0.02 1.42 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 2.30 7.51 -2.91 -0.02 2.27 16 35 H 0.07 2.05 7.82 -2.39 -0.02 2.03 16 36 H 0.09 2.22 7.81 -2.39 -0.02 2.20 16 37 H 0.08 2.40 7.85 -2.38 -0.02 2.38 16 38 H 0.03 1.00 6.66 -2.39 -0.02 0.98 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.06 3.15 6.16 -2.39 -0.01 3.13 16 43 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.02 1.08 5.44 -2.39 -0.01 1.07 16 45 H 0.05 2.18 7.96 -2.39 -0.02 2.16 16 46 H 0.05 1.64 6.05 -2.39 -0.01 1.63 16 47 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 48 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 49 H 0.08 1.46 7.71 -2.39 -0.02 1.44 16 Total: -1.00 -61.87 363.15 3.11 -58.76 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.88 Total: 18.33 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 4.33 Total: -45.51 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -4.13 Total: -78.18 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.87 3.11 -58.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208176884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.151 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds