Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99681 * 2 1 4 4 C 1.50694 * 120.00084 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.63943 * 359.57993 * 4 2 1 6 6 C 1.53018 * 109.82035 * 239.04759 * 4 2 1 7 7 C 1.50070 * 110.09978 * 190.58928 * 6 4 2 8 8 C 1.29437 * 124.06666 * 17.57822 * 7 6 4 9 9 C 1.50702 * 117.96167 * 179.29862 * 8 7 6 10 10 N 1.46901 * 109.46871 * 94.73647 * 9 8 7 11 11 C 1.46843 * 111.00428 * 293.95533 * 10 9 8 12 12 C 1.53038 * 109.52803 * 174.16203 * 11 10 9 13 13 C 1.53121 * 109.27699 * 59.17743 * 12 11 10 14 14 C 1.53114 * 109.16368 * 302.35015 * 13 12 11 15 15 H 1.09001 * 109.50240 * 297.67651 * 14 13 12 16 16 C 1.50694 * 109.50422 * 177.59401 * 14 13 12 17 17 H 1.08000 * 120.00563 * 239.99799 * 16 14 13 18 18 C 1.37885 * 119.99902 * 59.99962 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46853 * 110.99810 * 169.74802 * 10 9 8 25 25 C 1.50076 * 124.07895 * 359.02077 * 8 7 6 26 26 C 1.53016 * 110.14486 * 17.38639 * 25 8 7 27 27 H 1.08005 * 119.99728 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00191 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47313 * 270.00027 * 3 2 1 30 30 H 1.09000 * 109.47453 * 30.00313 * 3 2 1 31 31 H 1.09000 * 109.46787 * 149.99986 * 3 2 1 32 32 H 1.09005 * 109.35694 * 310.99106 * 6 4 2 33 33 H 1.09006 * 109.35677 * 70.70160 * 6 4 2 34 34 H 1.07998 * 117.96557 * 197.35190 * 7 6 4 35 35 H 1.08999 * 109.46912 * 334.73978 * 9 8 7 36 36 H 1.08996 * 109.47554 * 214.73704 * 9 8 7 37 37 H 1.08999 * 109.46223 * 54.14056 * 11 10 9 38 38 H 1.08995 * 109.45549 * 294.17443 * 11 10 9 39 39 H 1.08997 * 109.49793 * 299.24033 * 12 11 10 40 40 H 1.08998 * 109.50118 * 179.12152 * 12 11 10 41 41 H 1.09003 * 109.51869 * 182.44240 * 13 12 11 42 42 H 1.09001 * 109.57029 * 62.28834 * 13 12 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.46140 * 65.82542 * 24 10 9 45 45 H 1.08998 * 109.46036 * 305.85324 * 24 10 9 46 46 H 1.08997 * 109.35514 * 137.59460 * 25 8 7 47 47 H 1.08999 * 109.35817 * 257.18114 * 25 8 7 48 48 H 1.09008 * 109.64340 * 70.25209 * 26 25 8 49 49 H 1.09002 * 109.64159 * 190.87960 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3577 -2.1356 0.0066 6 6 2.9642 -1.3847 1.2339 7 6 3.9025 -2.5497 1.1134 8 6 4.1664 -3.1560 0.0008 9 6 5.1440 -4.3025 0.0354 10 7 4.4098 -5.5681 0.1663 11 6 3.7293 -5.6499 1.4650 12 6 2.8604 -6.9090 1.5088 13 6 3.7446 -8.1409 1.2963 14 6 4.4790 -8.0080 -0.0406 15 1 3.7530 -7.9771 -0.8531 16 6 5.3964 -9.1884 -0.2302 17 1 6.4594 -9.0337 -0.3423 18 6 4.8787 -10.4660 -0.2606 19 7 3.5844 -10.6545 -0.1237 20 14 6.0159 -11.9291 -0.4963 21 1 5.2183 -13.1818 -0.4919 22 1 6.7272 -11.7993 -1.7934 23 1 7.0062 -11.9695 0.6094 24 6 5.3009 -6.7171 -0.0394 25 6 3.5551 -2.7923 -1.3207 26 6 2.9469 -1.3899 -1.2518 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 2.2451 1.6198 -1.0276 30 1 1.4744 2.0648 0.5139 31 1 3.0159 1.1748 0.5138 32 1 3.5379 -0.4621 1.3227 33 1 2.3474 -1.5135 2.1234 34 1 4.3904 -2.9018 2.0103 35 1 5.8151 -4.1821 0.8858 36 1 5.7246 -4.3130 -0.8870 37 1 3.1008 -4.7699 1.6017 38 1 4.4717 -5.6931 2.2618 39 1 2.1090 -6.8601 0.7207 40 1 2.3677 -6.9775 2.4786 41 1 3.1238 -9.0369 1.2835 42 1 4.4712 -8.2128 2.1056 43 1 3.2202 -11.5533 -0.1454 44 1 6.0359 -6.7552 0.7646 45 1 5.8138 -6.6123 -0.9955 46 1 4.3240 -2.8151 -2.0929 47 1 2.7754 -3.5125 -1.5686 48 1 3.7429 -0.6479 -1.1893 49 1 2.3420 -1.2088 -2.1403 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208176885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 5.446782 kcal Electronic energy + Delta-G solvation = -23555.012717 eV Core-core repulsion = 20481.070614 eV Total energy + Delta-G solvation = -3073.942103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50905 -37.98916 -35.55166 -33.52475 -31.88895 -30.83078 -30.11670 -29.51282 -27.58318 -25.53652 -24.89935 -23.32730 -22.29926 -21.62115 -20.84897 -18.62660 -18.48329 -17.50471 -16.36374 -15.66147 -15.04698 -14.93963 -14.47957 -14.42029 -14.17104 -13.84932 -13.67598 -13.39613 -13.11226 -12.89218 -12.66207 -12.52685 -12.31216 -12.19743 -12.02804 -11.83082 -11.64149 -11.41133 -11.10305 -10.91266 -10.73100 -10.70186 -10.63585 -10.50484 -10.14487 -10.07695 -9.79761 -9.42588 -9.14876 -9.00152 -8.67970 -8.62361 -8.26721 -7.58093 -5.94611 -4.00857 2.06758 2.36822 3.33648 3.38301 3.40734 4.43394 4.50239 4.64731 4.73606 4.77752 4.97598 5.04406 5.19799 5.32432 5.35199 5.41014 5.43715 5.48624 5.59842 5.62781 5.67375 5.74608 5.76840 5.79227 5.88223 5.96735 5.97911 6.03607 6.08103 6.13981 6.19356 6.31809 6.35065 6.44845 6.50299 6.55888 6.68579 6.77810 6.78731 6.80963 7.00379 7.16165 7.26852 7.44919 7.73312 7.78402 7.88024 8.12327 8.21326 8.51565 9.03091 9.63128 11.11239 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034842 B = 0.003052 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.444033 B = 9172.559631 C = 9359.375425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.055 4.055 5 H 0.078 0.922 6 C -0.075 4.075 7 C -0.169 4.169 8 C -0.093 4.093 9 C 0.082 3.918 10 N -0.531 5.531 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.068 3.932 25 C -0.078 4.078 26 C -0.108 4.108 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 21.153 1.192 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.115 4.115 3 C -0.177 4.177 4 C -0.073 4.073 5 H 0.097 0.903 6 C -0.111 4.111 7 C -0.188 4.188 8 C -0.093 4.093 9 C -0.046 4.046 10 N -0.256 5.256 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.070 0.930 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.059 4.059 25 C -0.115 4.115 26 C -0.145 4.145 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.487 20.971 0.829 21.275 hybrid contribution 1.241 -0.920 0.642 1.673 sum -2.247 20.051 1.471 20.231 Atomic orbital electron populations 1.23694 0.95234 1.01725 1.03229 1.21758 0.95220 0.95599 0.98909 1.20873 1.00353 0.94473 1.02015 1.20363 0.96770 0.94585 0.95586 0.90320 1.20387 0.96300 0.96967 0.97490 1.21830 1.00997 0.98591 0.97357 1.20793 0.97722 0.95801 0.95009 1.21246 0.93633 0.89046 1.00634 1.61990 1.30851 1.01025 1.31707 1.22080 0.96780 0.98778 0.89063 1.21664 0.98499 0.95567 0.99694 1.21652 0.98082 0.96827 0.98305 1.18643 0.94206 0.89179 0.94215 0.94815 1.21122 0.93548 0.91106 1.49617 0.92952 1.24935 0.94959 0.98749 0.95191 1.69885 1.11025 1.21592 1.50220 0.86694 0.80777 0.82039 0.78665 1.21324 1.20311 1.20418 1.22323 0.93976 0.90952 0.98643 1.20345 1.00197 0.96151 0.94839 1.21611 0.98583 0.97267 0.97055 0.88469 0.88745 0.91548 0.92124 0.91634 0.91094 0.91442 0.88268 0.95274 0.90805 0.91867 0.96356 0.92203 0.93726 0.89164 0.95283 0.93027 0.96467 0.92362 0.91140 0.90081 0.91909 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 13.91 29.01 0.40 -1.39 16 2 C -0.11 -1.05 4.89 -101.07 -0.49 -1.54 16 3 C -0.12 -0.91 9.58 36.00 0.34 -0.56 16 4 C -0.05 -0.56 2.40 -91.56 -0.22 -0.78 16 5 H 0.08 0.91 7.78 -51.93 -0.40 0.50 16 6 C -0.07 -0.77 5.40 -28.18 -0.15 -0.93 16 7 C -0.17 -2.08 7.69 -35.90 -0.28 -2.35 16 8 C -0.09 -1.24 4.81 -100.93 -0.49 -1.72 16 9 C 0.08 1.27 5.01 -4.97 -0.02 1.25 16 10 N -0.53 -9.97 4.65 -236.11 -1.10 -11.06 16 11 C 0.06 1.11 5.15 -3.84 -0.02 1.09 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 14 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 15 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.52 -14.27 8.56 -34.44 -0.29 -14.56 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.58 11.35 55.43 0.63 -24.95 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 25 C -0.08 -0.95 5.80 -28.18 -0.16 -1.11 16 26 C -0.11 -1.09 5.05 -26.52 -0.13 -1.23 16 27 H 0.10 0.87 7.84 -52.48 -0.41 0.46 16 28 H 0.09 0.72 8.04 -52.49 -0.42 0.30 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 32 H 0.07 0.66 6.42 -51.93 -0.33 0.33 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.26 7.72 -52.49 -0.41 0.85 16 35 H 0.03 0.45 7.78 -51.93 -0.40 0.05 16 36 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.06 1.05 6.01 -51.93 -0.31 0.74 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 46 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.60 8.01 -51.92 -0.42 0.19 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -28.04 370.24 -11.24 -39.28 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -9.20 Total: -0.42 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.13 Total: -24.82 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.47 Total: -36.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.04 -11.24 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208176885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.731 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds