Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99681 * 2 1 4 4 C 1.50694 * 120.00084 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.63943 * 359.57993 * 4 2 1 6 6 C 1.53018 * 109.82035 * 239.04759 * 4 2 1 7 7 C 1.50070 * 110.09978 * 190.58928 * 6 4 2 8 8 C 1.29437 * 124.06666 * 17.57822 * 7 6 4 9 9 C 1.50702 * 117.96167 * 179.29862 * 8 7 6 10 10 N 1.46901 * 109.46871 * 94.73647 * 9 8 7 11 11 C 1.46843 * 111.00428 * 293.95533 * 10 9 8 12 12 C 1.53038 * 109.52803 * 174.16203 * 11 10 9 13 13 C 1.53121 * 109.27699 * 59.17743 * 12 11 10 14 14 C 1.53114 * 109.16368 * 302.35015 * 13 12 11 15 15 H 1.09001 * 109.50240 * 297.67651 * 14 13 12 16 16 C 1.50694 * 109.50422 * 177.59401 * 14 13 12 17 17 H 1.08000 * 120.00563 * 239.99799 * 16 14 13 18 18 C 1.37885 * 119.99902 * 59.99962 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46853 * 110.99810 * 169.74802 * 10 9 8 25 25 C 1.50076 * 124.07895 * 359.02077 * 8 7 6 26 26 C 1.53016 * 110.14486 * 17.38639 * 25 8 7 27 27 H 1.08005 * 119.99728 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00191 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47313 * 270.00027 * 3 2 1 30 30 H 1.09000 * 109.47453 * 30.00313 * 3 2 1 31 31 H 1.09000 * 109.46787 * 149.99986 * 3 2 1 32 32 H 1.09005 * 109.35694 * 310.99106 * 6 4 2 33 33 H 1.09006 * 109.35677 * 70.70160 * 6 4 2 34 34 H 1.07998 * 117.96557 * 197.35190 * 7 6 4 35 35 H 1.08999 * 109.46912 * 334.73978 * 9 8 7 36 36 H 1.08996 * 109.47554 * 214.73704 * 9 8 7 37 37 H 1.08999 * 109.46223 * 54.14056 * 11 10 9 38 38 H 1.08995 * 109.45549 * 294.17443 * 11 10 9 39 39 H 1.08997 * 109.49793 * 299.24033 * 12 11 10 40 40 H 1.08998 * 109.50118 * 179.12152 * 12 11 10 41 41 H 1.09003 * 109.51869 * 182.44240 * 13 12 11 42 42 H 1.09001 * 109.57029 * 62.28834 * 13 12 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.46140 * 65.82542 * 24 10 9 45 45 H 1.08998 * 109.46036 * 305.85324 * 24 10 9 46 46 H 1.08997 * 109.35514 * 137.59460 * 25 8 7 47 47 H 1.08999 * 109.35817 * 257.18114 * 25 8 7 48 48 H 1.09008 * 109.64340 * 70.25209 * 26 25 8 49 49 H 1.09002 * 109.64159 * 190.87960 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3577 -2.1356 0.0066 6 6 2.9642 -1.3847 1.2339 7 6 3.9025 -2.5497 1.1134 8 6 4.1664 -3.1560 0.0008 9 6 5.1440 -4.3025 0.0354 10 7 4.4098 -5.5681 0.1663 11 6 3.7293 -5.6499 1.4650 12 6 2.8604 -6.9090 1.5088 13 6 3.7446 -8.1409 1.2963 14 6 4.4790 -8.0080 -0.0406 15 1 3.7530 -7.9771 -0.8531 16 6 5.3964 -9.1884 -0.2302 17 1 6.4594 -9.0337 -0.3423 18 6 4.8787 -10.4660 -0.2606 19 7 3.5844 -10.6545 -0.1237 20 14 6.0159 -11.9291 -0.4963 21 1 5.2183 -13.1818 -0.4919 22 1 6.7272 -11.7993 -1.7934 23 1 7.0062 -11.9695 0.6094 24 6 5.3009 -6.7171 -0.0394 25 6 3.5551 -2.7923 -1.3207 26 6 2.9469 -1.3899 -1.2518 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 2.2451 1.6198 -1.0276 30 1 1.4744 2.0648 0.5139 31 1 3.0159 1.1748 0.5138 32 1 3.5379 -0.4621 1.3227 33 1 2.3474 -1.5135 2.1234 34 1 4.3904 -2.9018 2.0103 35 1 5.8151 -4.1821 0.8858 36 1 5.7246 -4.3130 -0.8870 37 1 3.1008 -4.7699 1.6017 38 1 4.4717 -5.6931 2.2618 39 1 2.1090 -6.8601 0.7207 40 1 2.3677 -6.9775 2.4786 41 1 3.1238 -9.0369 1.2835 42 1 4.4712 -8.2128 2.1056 43 1 3.2202 -11.5533 -0.1454 44 1 6.0359 -6.7552 0.7646 45 1 5.8138 -6.6123 -0.9955 46 1 4.3240 -2.8151 -2.0929 47 1 2.7754 -3.5125 -1.5686 48 1 3.7429 -0.6479 -1.1893 49 1 2.3420 -1.2088 -2.1403 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208176885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = -7.251671 kcal Electronic energy + Delta-G solvation = -23555.563363 eV Core-core repulsion = 20481.070614 eV Total energy + Delta-G solvation = -3074.492749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58776 -39.38208 -36.64654 -35.17802 -33.52839 -31.93597 -31.51248 -30.93285 -28.17316 -26.92415 -26.80596 -24.33878 -23.65678 -23.12360 -22.23805 -20.36058 -19.27653 -18.57665 -18.29098 -16.88368 -16.46130 -16.39047 -15.89032 -15.57857 -15.11446 -15.00844 -14.91715 -14.65746 -14.35957 -14.29074 -14.06311 -13.82530 -13.53963 -13.31156 -13.17915 -12.93960 -12.84136 -12.71383 -12.58489 -12.49207 -12.40855 -12.14448 -11.85249 -11.73050 -11.54069 -11.42520 -11.37983 -11.11115 -10.76831 -10.68118 -10.37635 -9.85635 -9.65321 -9.08320 -8.08141 -6.22698 1.29557 1.40976 1.42475 1.42709 1.50167 2.42712 3.18450 3.24061 3.69134 3.82316 3.89092 4.09994 4.20327 4.22283 4.28159 4.34675 4.39957 4.47536 4.55107 4.63323 4.63436 4.69603 4.75459 4.76606 4.79159 4.88581 4.88785 4.89216 4.97012 5.02837 5.08160 5.11714 5.13961 5.17169 5.22193 5.22930 5.29619 5.37421 5.48575 5.51117 5.62555 5.73632 5.82410 5.96057 6.07408 6.09790 6.15081 6.22266 6.37461 6.46197 6.89825 7.45079 8.96321 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034842 B = 0.003052 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.444033 B = 9172.559631 C = 9359.375425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.053 4.053 5 H 0.061 0.939 6 C -0.073 4.073 7 C -0.155 4.155 8 C -0.108 4.108 9 C 0.084 3.916 10 N -0.540 5.540 11 C 0.069 3.931 12 C -0.110 4.110 13 C -0.103 4.103 14 C 0.055 3.945 15 H -0.004 1.004 16 C -0.538 4.538 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.955 3.045 21 H -0.284 1.284 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.082 3.918 25 C -0.076 4.076 26 C -0.100 4.100 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.021 0.979 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.260 0.740 44 H 0.013 0.987 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 23.171 1.746 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.120 4.120 3 C -0.176 4.176 4 C -0.072 4.072 5 H 0.079 0.921 6 C -0.110 4.110 7 C -0.174 4.174 8 C -0.109 4.109 9 C -0.043 4.043 10 N -0.265 5.265 11 C -0.059 4.059 12 C -0.148 4.148 13 C -0.142 4.142 14 C 0.036 3.964 15 H 0.014 0.986 16 C -0.577 4.577 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.780 3.220 21 H -0.209 1.209 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.046 4.046 25 C -0.113 4.113 26 C -0.138 4.138 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.985 23.007 1.384 23.241 hybrid contribution 1.051 -1.533 0.477 1.919 sum -1.934 21.474 1.861 21.641 Atomic orbital electron populations 1.23815 0.95394 1.02108 1.03026 1.21810 0.95312 0.95707 0.99130 1.20893 1.00412 0.93683 1.02603 1.20311 0.96513 0.94801 0.95573 0.92060 1.20423 0.96092 0.96759 0.97681 1.22018 1.00185 0.98485 0.96755 1.20703 0.98392 0.95753 0.96022 1.21292 0.94122 0.87995 1.00905 1.61922 1.30837 1.01503 1.32203 1.22015 0.96680 0.98362 0.88846 1.21578 0.97926 0.94758 1.00512 1.21461 0.97846 0.97510 0.97336 1.18557 0.93640 0.90768 0.93423 0.98612 1.21500 0.93891 0.92395 1.49865 0.93044 1.25737 0.96414 1.01520 0.94850 1.70034 1.12615 1.22119 1.50725 0.85664 0.78891 0.78543 0.78864 1.20895 1.19596 1.19692 1.21993 0.93505 0.90594 0.98482 1.20309 0.99696 0.96935 0.94389 1.21557 0.98807 0.96087 0.97313 0.89145 0.87437 0.90968 0.91222 0.91238 0.89376 0.90947 0.88310 0.94830 0.90615 0.89661 0.96099 0.93316 0.91455 0.92349 0.96013 0.93046 0.96856 0.92462 0.90879 0.92071 0.90796 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.30 13.91 67.77 0.94 -2.35 16 2 C -0.12 -1.91 4.89 -16.50 -0.08 -1.99 16 3 C -0.12 -1.45 9.58 71.23 0.68 -0.76 16 4 C -0.05 -0.99 2.40 -11.40 -0.03 -1.02 16 5 H 0.06 1.35 7.78 -2.39 -0.02 1.33 16 6 C -0.07 -1.32 5.40 29.66 0.16 -1.16 16 7 C -0.16 -3.46 7.69 27.04 0.21 -3.25 16 8 C -0.11 -2.72 4.81 -15.09 -0.07 -2.79 16 9 C 0.08 2.51 5.01 85.56 0.43 2.93 16 10 N -0.54 -20.08 4.65 -900.93 -4.19 -24.27 16 11 C 0.07 2.43 5.15 86.33 0.44 2.87 16 12 C -0.11 -4.43 6.09 30.65 0.19 -4.24 16 13 C -0.10 -5.12 5.02 30.67 0.15 -4.97 16 14 C 0.05 2.88 2.26 -11.49 -0.03 2.85 16 15 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 16 C -0.54 -30.50 8.56 25.60 0.22 -30.28 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.77 5.30 84.66 0.45 1.22 16 19 N -0.92 -54.17 11.35 21.45 0.24 -53.93 16 20 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.08 3.58 4.68 86.33 0.40 3.98 16 25 C -0.08 -1.77 5.80 29.66 0.17 -1.60 16 26 C -0.10 -1.85 5.05 30.73 0.16 -1.69 16 27 H 0.09 1.54 7.84 -2.91 -0.02 1.51 16 28 H 0.11 1.41 8.04 -2.91 -0.02 1.38 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.72 8.06 -2.39 -0.02 0.71 16 31 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 32 H 0.09 1.34 6.42 -2.38 -0.02 1.33 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.10 2.24 7.72 -2.91 -0.02 2.22 16 35 H 0.03 0.98 7.78 -2.39 -0.02 0.96 16 36 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 37 H 0.09 2.66 6.01 -2.39 -0.01 2.65 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 2.47 8.01 -2.39 -0.02 2.45 16 46 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.22 8.01 -2.38 -0.02 1.20 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -61.10 370.24 3.36 -57.74 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.87 Total: 16.35 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 4.40 Total: -42.26 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -3.94 Total: -78.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -61.10 3.36 -57.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208176885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.490 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds