Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99531 * 2 1 4 4 C 1.50699 * 120.00321 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.63984 * 359.97438 * 4 2 1 6 6 C 1.53014 * 109.64106 * 239.57681 * 4 2 1 7 7 C 1.50169 * 110.09410 * 191.09228 * 6 4 2 8 8 C 1.29439 * 124.14701 * 16.71955 * 7 6 4 9 9 C 1.50705 * 117.96140 * 179.78013 * 8 7 6 10 10 N 1.46899 * 109.47059 * 263.34931 * 9 8 7 11 11 C 1.46851 * 111.00114 * 51.82312 * 10 9 8 12 12 C 1.53034 * 109.52344 * 185.83979 * 11 10 9 13 13 C 1.53121 * 109.27656 * 300.81880 * 12 11 10 14 14 C 1.50707 * 109.52132 * 177.56261 * 13 12 11 15 15 H 1.07996 * 119.99953 * 240.31944 * 14 13 12 16 16 C 1.37872 * 120.00316 * 60.31712 * 14 13 12 17 17 N 1.31522 * 119.99662 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00409 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46854 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47435 * 119.99791 * 18 16 14 21 21 H 1.48500 * 109.47183 * 240.00223 * 18 16 14 22 22 C 1.53118 * 109.16250 * 57.65806 * 13 12 11 23 23 C 1.46849 * 110.99840 * 176.03110 * 10 9 8 24 24 C 1.50066 * 124.07533 * 359.75920 * 8 7 6 25 25 C 1.53019 * 110.14720 * 17.12860 * 24 8 7 26 26 H 1.08002 * 119.99919 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00265 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47436 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46648 * 120.00513 * 3 2 1 30 30 H 1.09002 * 109.46790 * 240.00156 * 3 2 1 31 31 H 1.09000 * 109.36518 * 311.08382 * 6 4 2 32 32 H 1.09001 * 109.35896 * 70.67227 * 6 4 2 33 33 H 1.08004 * 117.89122 * 196.92258 * 7 6 4 34 34 H 1.08995 * 109.47034 * 23.35116 * 9 8 7 35 35 H 1.09000 * 109.46862 * 143.34994 * 9 8 7 36 36 H 1.09005 * 109.46182 * 305.85400 * 11 10 9 37 37 H 1.08999 * 109.46300 * 65.82002 * 11 10 9 38 38 H 1.08998 * 109.50330 * 180.88152 * 12 11 10 39 39 H 1.08996 * 109.53832 * 60.78059 * 12 11 10 40 40 H 1.08993 * 109.52361 * 297.74841 * 13 12 11 41 41 H 0.97002 * 120.00054 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.50308 * 182.40109 * 22 13 12 43 43 H 1.09001 * 109.53449 * 62.30201 * 22 13 12 44 44 H 1.08998 * 109.46444 * 294.17783 * 23 10 9 45 45 H 1.08999 * 109.45972 * 54.14984 * 23 10 9 46 46 H 1.09004 * 109.35673 * 256.92183 * 24 8 7 47 47 H 1.09002 * 109.24464 * 137.26943 * 24 8 7 48 48 H 1.09001 * 109.64406 * 190.87789 * 25 24 8 49 49 H 1.09007 * 109.64066 * 70.25321 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3577 -2.1357 -0.0005 6 6 2.9527 -1.3861 1.2421 7 6 3.9029 -2.5427 1.1220 8 6 4.1720 -3.1497 0.0109 9 6 5.1528 -4.2933 0.0499 10 7 6.4872 -3.8069 -0.3252 11 6 6.8641 -2.6346 0.4750 12 6 8.1898 -2.0691 -0.0395 13 6 9.2721 -3.1477 0.0599 14 6 10.5660 -2.6160 -0.5008 15 1 11.0297 -3.1043 -1.3451 16 6 11.1577 -1.5061 0.0639 17 7 10.5926 -0.9110 1.0917 18 14 12.7610 -0.8467 -0.6316 19 1 13.1863 -1.6884 -1.7787 20 1 12.5638 0.5521 -1.0896 21 1 13.8080 -0.8799 0.4210 22 6 8.8331 -4.3757 -0.7423 23 6 7.4887 -4.8744 -0.2074 24 6 3.5677 -2.7858 -1.3137 25 6 2.9548 -1.3853 -1.2464 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.3551 2.1336 0.0005 29 1 2.6901 1.3629 0.8899 30 1 2.6900 1.3629 -0.8900 31 1 3.5229 -0.4622 1.3394 32 1 2.3279 -1.5174 2.1255 33 1 4.3900 -2.8918 2.0206 34 1 5.1871 -4.7082 1.0572 35 1 4.8375 -5.0663 -0.6509 36 1 6.0881 -1.8736 0.3922 37 1 6.9751 -2.9279 1.5189 38 1 8.4772 -1.2085 0.5645 39 1 8.0762 -1.7623 -1.0793 40 1 9.4138 -3.4262 1.1041 41 1 11.0091 -0.1304 1.4893 42 1 9.5799 -5.1630 -0.6404 43 1 8.7292 -4.1064 -1.7934 44 1 7.5967 -5.1572 0.8397 45 1 7.1663 -5.7402 -0.7859 46 1 2.7917 -3.5080 -1.5674 47 1 4.3431 -2.8045 -2.0796 48 1 2.3549 -1.2047 -2.1384 49 1 3.7483 -0.6410 -1.1780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208177631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = 6.025035 kcal Electronic energy + Delta-G solvation = -23749.431723 eV Core-core repulsion = 20675.514695 eV Total energy + Delta-G solvation = -3073.917028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.54673 -37.97644 -35.54494 -33.64551 -31.68780 -30.74470 -29.83382 -29.63409 -27.50329 -26.34016 -24.31743 -23.29777 -22.02726 -21.89039 -20.84073 -18.57728 -18.46328 -17.47054 -16.35772 -15.66336 -15.31534 -14.72955 -14.47043 -14.40242 -14.18949 -13.77654 -13.67774 -13.36271 -13.00709 -12.93374 -12.61492 -12.43993 -12.28514 -12.20003 -12.01346 -11.77922 -11.53305 -11.32631 -11.25895 -10.93519 -10.75682 -10.64636 -10.51490 -10.42177 -10.15708 -10.07414 -9.87687 -9.37778 -9.13448 -8.93697 -8.72147 -8.51269 -8.25315 -7.64520 -5.93520 -3.98597 2.09725 2.37339 3.32343 3.40355 3.44620 4.48019 4.50794 4.62954 4.71263 4.79340 5.01692 5.06662 5.24339 5.36618 5.37541 5.42801 5.51011 5.54378 5.60626 5.65894 5.70525 5.77322 5.80330 5.83276 5.86793 5.96697 6.00504 6.03348 6.12797 6.17702 6.21474 6.31684 6.32633 6.41017 6.52635 6.67372 6.69651 6.72029 6.82181 6.90964 7.12232 7.14582 7.25164 7.50598 7.68569 7.76803 7.89380 8.10188 8.21700 8.52969 9.05335 9.65534 11.12576 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.003717 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.109598 B = 7531.356741 C = 8468.136543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.123 4.123 4 C -0.053 4.053 5 H 0.074 0.926 6 C -0.077 4.077 7 C -0.160 4.160 8 C -0.102 4.102 9 C 0.083 3.917 10 N -0.529 5.529 11 C 0.056 3.944 12 C -0.103 4.103 13 C 0.047 3.953 14 C -0.508 4.508 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.106 4.106 23 C 0.061 3.939 24 C -0.078 4.078 25 C -0.109 4.109 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.847 -0.995 -1.299 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.110 4.110 3 C -0.180 4.180 4 C -0.071 4.071 5 H 0.092 0.908 6 C -0.114 4.114 7 C -0.179 4.179 8 C -0.102 4.102 9 C -0.044 4.044 10 N -0.254 5.254 11 C -0.071 4.071 12 C -0.141 4.141 13 C 0.029 3.971 14 C -0.547 4.547 15 H 0.072 0.928 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.143 4.143 23 C -0.067 4.067 24 C -0.115 4.115 25 C -0.147 4.147 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.810 -0.716 -1.673 18.898 hybrid contribution 0.931 0.109 0.671 1.153 sum -17.879 -0.607 -1.001 17.918 Atomic orbital electron populations 1.23665 0.95124 1.01539 1.03975 1.21790 0.95200 0.95754 0.98288 1.20910 1.00306 0.94056 1.02691 1.20345 0.96571 0.94400 0.95831 0.90761 1.20426 0.96253 0.97535 0.97174 1.21895 1.00091 0.98127 0.97780 1.20714 0.97176 0.97489 0.94865 1.21226 0.89450 0.95124 0.98629 1.62074 1.00234 1.07193 1.55872 1.22334 0.99463 0.91692 0.93639 1.21639 0.91031 1.01324 1.00093 1.18689 0.93364 0.90201 0.94864 1.21256 1.06375 1.11869 1.15168 0.92757 1.24971 0.97337 0.96798 0.94966 1.69898 1.39026 1.21204 1.22991 0.86591 0.83918 0.78813 0.78994 1.19847 1.21093 1.21189 1.21670 0.92771 0.99341 1.00559 1.22114 0.93518 0.92840 0.98245 1.20334 0.99581 0.96022 0.95518 1.21619 0.98659 0.97602 0.96772 0.88747 0.88723 0.92267 0.91282 0.91243 0.90646 0.91456 0.88198 0.95340 0.91072 0.91897 0.96503 0.89143 0.94000 0.96292 0.93233 0.93284 0.92515 0.95978 0.92563 0.91484 0.89924 0.91855 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.83 13.93 29.01 0.40 -1.43 16 2 C -0.11 -1.07 4.89 -101.07 -0.49 -1.57 16 3 C -0.12 -1.13 9.48 36.01 0.34 -0.79 16 4 C -0.05 -0.55 2.40 -91.56 -0.22 -0.77 16 5 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16 6 C -0.08 -0.87 5.41 -28.13 -0.15 -1.02 16 7 C -0.16 -2.09 7.79 -35.85 -0.28 -2.37 16 8 C -0.10 -1.38 4.19 -100.94 -0.42 -1.80 16 9 C 0.08 1.24 5.17 -4.97 -0.03 1.21 16 10 N -0.53 -9.56 4.76 -236.11 -1.12 -10.69 16 11 C 0.06 1.12 4.84 -3.83 -0.02 1.11 16 12 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 13 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 17 N -0.89 -25.66 11.37 55.43 0.63 -25.03 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 23 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 24 C -0.08 -0.94 5.80 -28.18 -0.16 -1.10 16 25 C -0.11 -1.21 4.92 -26.52 -0.13 -1.34 16 26 H 0.09 0.78 7.84 -52.49 -0.41 0.37 16 27 H 0.09 0.75 7.83 -52.49 -0.41 0.34 16 28 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 29 H 0.07 0.64 7.10 -51.93 -0.37 0.27 16 30 H 0.07 0.65 7.60 -51.93 -0.39 0.25 16 31 H 0.08 0.88 6.77 -51.93 -0.35 0.53 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.37 7.72 -52.48 -0.41 0.97 16 34 H 0.03 0.43 7.76 -51.93 -0.40 0.02 16 35 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.06 1.20 5.87 -51.93 -0.31 0.89 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 39 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.85 7.70 -51.92 -0.40 0.45 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -28.18 369.41 -11.19 -39.37 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -9.19 Total: -0.06 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.05 Total: -25.65 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.49 Total: -35.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.18 -11.19 -39.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208177631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.396 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds