Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99531 * 2 1 4 4 C 1.50699 * 120.00321 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.63984 * 359.97438 * 4 2 1 6 6 C 1.53014 * 109.64106 * 239.57681 * 4 2 1 7 7 C 1.50169 * 110.09410 * 191.09228 * 6 4 2 8 8 C 1.29439 * 124.14701 * 16.71955 * 7 6 4 9 9 C 1.50705 * 117.96140 * 179.78013 * 8 7 6 10 10 N 1.46899 * 109.47059 * 263.34931 * 9 8 7 11 11 C 1.46851 * 111.00114 * 51.82312 * 10 9 8 12 12 C 1.53034 * 109.52344 * 185.83979 * 11 10 9 13 13 C 1.53121 * 109.27656 * 300.81880 * 12 11 10 14 14 C 1.50707 * 109.52132 * 177.56261 * 13 12 11 15 15 H 1.07996 * 119.99953 * 240.31944 * 14 13 12 16 16 C 1.37872 * 120.00316 * 60.31712 * 14 13 12 17 17 N 1.31522 * 119.99662 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00409 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46854 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47435 * 119.99791 * 18 16 14 21 21 H 1.48500 * 109.47183 * 240.00223 * 18 16 14 22 22 C 1.53118 * 109.16250 * 57.65806 * 13 12 11 23 23 C 1.46849 * 110.99840 * 176.03110 * 10 9 8 24 24 C 1.50066 * 124.07533 * 359.75920 * 8 7 6 25 25 C 1.53019 * 110.14720 * 17.12860 * 24 8 7 26 26 H 1.08002 * 119.99919 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00265 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47436 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46648 * 120.00513 * 3 2 1 30 30 H 1.09002 * 109.46790 * 240.00156 * 3 2 1 31 31 H 1.09000 * 109.36518 * 311.08382 * 6 4 2 32 32 H 1.09001 * 109.35896 * 70.67227 * 6 4 2 33 33 H 1.08004 * 117.89122 * 196.92258 * 7 6 4 34 34 H 1.08995 * 109.47034 * 23.35116 * 9 8 7 35 35 H 1.09000 * 109.46862 * 143.34994 * 9 8 7 36 36 H 1.09005 * 109.46182 * 305.85400 * 11 10 9 37 37 H 1.08999 * 109.46300 * 65.82002 * 11 10 9 38 38 H 1.08998 * 109.50330 * 180.88152 * 12 11 10 39 39 H 1.08996 * 109.53832 * 60.78059 * 12 11 10 40 40 H 1.08993 * 109.52361 * 297.74841 * 13 12 11 41 41 H 0.97002 * 120.00054 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.50308 * 182.40109 * 22 13 12 43 43 H 1.09001 * 109.53449 * 62.30201 * 22 13 12 44 44 H 1.08998 * 109.46444 * 294.17783 * 23 10 9 45 45 H 1.08999 * 109.45972 * 54.14984 * 23 10 9 46 46 H 1.09004 * 109.35673 * 256.92183 * 24 8 7 47 47 H 1.09002 * 109.24464 * 137.26943 * 24 8 7 48 48 H 1.09001 * 109.64406 * 190.87789 * 25 24 8 49 49 H 1.09007 * 109.64066 * 70.25321 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3577 -2.1357 -0.0005 6 6 2.9527 -1.3861 1.2421 7 6 3.9029 -2.5427 1.1220 8 6 4.1720 -3.1497 0.0109 9 6 5.1528 -4.2933 0.0499 10 7 6.4872 -3.8069 -0.3252 11 6 6.8641 -2.6346 0.4750 12 6 8.1898 -2.0691 -0.0395 13 6 9.2721 -3.1477 0.0599 14 6 10.5660 -2.6160 -0.5008 15 1 11.0297 -3.1043 -1.3451 16 6 11.1577 -1.5061 0.0639 17 7 10.5926 -0.9110 1.0917 18 14 12.7610 -0.8467 -0.6316 19 1 13.1863 -1.6884 -1.7787 20 1 12.5638 0.5521 -1.0896 21 1 13.8080 -0.8799 0.4210 22 6 8.8331 -4.3757 -0.7423 23 6 7.4887 -4.8744 -0.2074 24 6 3.5677 -2.7858 -1.3137 25 6 2.9548 -1.3853 -1.2464 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.3551 2.1336 0.0005 29 1 2.6901 1.3629 0.8899 30 1 2.6900 1.3629 -0.8900 31 1 3.5229 -0.4622 1.3394 32 1 2.3279 -1.5174 2.1255 33 1 4.3900 -2.8918 2.0206 34 1 5.1871 -4.7082 1.0572 35 1 4.8375 -5.0663 -0.6509 36 1 6.0881 -1.8736 0.3922 37 1 6.9751 -2.9279 1.5189 38 1 8.4772 -1.2085 0.5645 39 1 8.0762 -1.7623 -1.0793 40 1 9.4138 -3.4262 1.1041 41 1 11.0091 -0.1304 1.4893 42 1 9.5799 -5.1630 -0.6404 43 1 8.7292 -4.1064 -1.7934 44 1 7.5967 -5.1572 0.8397 45 1 7.1663 -5.7402 -0.7859 46 1 2.7917 -3.5080 -1.5674 47 1 4.3431 -2.8045 -2.0796 48 1 2.3549 -1.2047 -2.1384 49 1 3.7483 -0.6410 -1.1780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208177631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -6.885083 kcal Electronic energy + Delta-G solvation = -23749.991548 eV Core-core repulsion = 20675.514695 eV Total energy + Delta-G solvation = -3074.476853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65845 -39.34627 -36.70226 -35.26576 -33.34691 -31.77997 -31.38484 -31.02585 -28.22275 -27.98496 -25.85331 -24.38017 -23.62358 -23.24583 -22.20538 -20.32235 -19.29635 -18.46472 -18.41976 -16.95700 -16.62404 -16.31534 -15.80845 -15.61001 -15.13729 -14.95288 -14.82065 -14.67728 -14.43194 -14.23962 -14.11488 -13.84532 -13.65004 -13.25293 -13.11020 -12.92177 -12.80471 -12.75010 -12.55142 -12.43870 -12.42587 -12.11083 -11.98441 -11.85606 -11.55462 -11.43373 -11.32167 -11.00321 -10.81096 -10.62793 -10.37560 -9.88230 -9.65440 -9.11148 -8.07773 -6.21278 1.27821 1.39550 1.41269 1.41719 1.52883 2.43733 3.17801 3.21277 3.66137 3.81977 3.89127 4.06875 4.24090 4.25632 4.29848 4.32480 4.41100 4.45297 4.51486 4.62791 4.64474 4.69785 4.73571 4.76421 4.83049 4.83196 4.87222 4.91781 4.97952 5.03308 5.07954 5.11604 5.14043 5.18305 5.22100 5.24192 5.25877 5.34513 5.46538 5.57642 5.62999 5.71051 5.82157 5.99659 6.01623 6.05578 6.12706 6.33124 6.35621 6.41044 6.90526 7.46446 8.96922 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.003717 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.109598 B = 7531.356741 C = 8468.136543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.124 4.124 4 C -0.046 4.046 5 H 0.080 0.920 6 C -0.076 4.076 7 C -0.160 4.160 8 C -0.112 4.112 9 C 0.084 3.916 10 N -0.533 5.533 11 C 0.074 3.926 12 C -0.092 4.092 13 C 0.044 3.956 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.099 4.099 23 C 0.066 3.934 24 C -0.074 4.074 25 C -0.106 4.106 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.004 0.996 38 H 0.058 0.942 39 H 0.028 0.972 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.430 -1.472 -2.178 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.180 4.180 4 C -0.064 4.064 5 H 0.099 0.901 6 C -0.113 4.113 7 C -0.179 4.179 8 C -0.112 4.112 9 C -0.043 4.043 10 N -0.258 5.258 11 C -0.054 4.054 12 C -0.131 4.131 13 C 0.025 3.975 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.137 4.137 23 C -0.062 4.062 24 C -0.111 4.111 25 C -0.143 4.143 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.003 0.997 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.403 -1.206 -2.555 20.598 hybrid contribution 1.401 0.251 0.978 1.727 sum -19.002 -0.956 -1.577 19.092 Atomic orbital electron populations 1.23846 0.94833 1.02460 1.02182 1.21772 0.95556 0.95421 0.99833 1.20912 1.00451 0.94479 1.02172 1.20273 0.96296 0.95153 0.94726 0.90119 1.20435 0.96171 0.96334 0.98331 1.22023 1.00149 0.98400 0.97351 1.20786 0.97298 0.97387 0.95733 1.21312 0.87624 0.96147 0.99179 1.62017 1.01735 1.06609 1.55410 1.22008 0.97507 0.92988 0.92849 1.21396 0.92983 1.00095 0.98624 1.18663 0.93242 0.92240 0.93319 1.21615 1.07690 1.12363 1.15317 0.93089 1.25759 1.00646 0.97059 0.95276 1.70038 1.40339 1.21464 1.23929 0.85571 0.79841 0.78189 0.78450 1.19167 1.20575 1.20686 1.21537 0.94852 0.97703 0.99580 1.22061 0.92069 0.93703 0.98371 1.20320 0.99637 0.97034 0.94099 1.21578 0.98422 0.96539 0.97776 0.87990 0.87678 0.91150 0.91849 0.91815 0.91309 0.90419 0.89216 0.95291 0.89017 0.90904 0.97788 0.92370 0.95270 0.99698 0.93154 0.92810 0.92926 0.96402 0.89207 0.89624 0.91307 0.90686 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 13.93 67.78 0.94 -2.05 16 2 C -0.13 -2.21 4.89 -16.49 -0.08 -2.29 16 3 C -0.12 -2.13 9.48 71.24 0.68 -1.46 16 4 C -0.05 -0.88 2.40 -11.40 -0.03 -0.90 16 5 H 0.08 1.45 7.78 -2.39 -0.02 1.43 16 6 C -0.08 -1.63 5.41 29.69 0.16 -1.47 16 7 C -0.16 -4.04 7.79 27.07 0.21 -3.83 16 8 C -0.11 -2.86 4.19 -15.09 -0.06 -2.92 16 9 C 0.08 2.35 5.17 85.56 0.44 2.79 16 10 N -0.53 -18.75 4.76 -900.91 -4.29 -23.03 16 11 C 0.07 3.02 4.84 86.32 0.42 3.44 16 12 C -0.09 -4.61 5.12 30.65 0.16 -4.45 16 13 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 14 C -0.53 -30.27 8.56 25.60 0.22 -30.06 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.01 0.61 5.31 84.65 0.45 1.06 16 17 N -0.92 -54.27 11.37 21.45 0.24 -54.03 16 18 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C -0.10 -4.23 5.32 30.65 0.16 -4.06 16 23 C 0.07 2.33 5.46 86.33 0.47 2.80 16 24 C -0.07 -1.65 5.80 29.66 0.17 -1.48 16 25 C -0.11 -2.19 4.92 30.73 0.15 -2.04 16 26 H 0.10 1.40 7.84 -2.91 -0.02 1.37 16 27 H 0.10 1.38 7.83 -2.91 -0.02 1.35 16 28 H 0.07 1.02 7.78 -2.39 -0.02 1.01 16 29 H 0.06 1.14 7.10 -2.39 -0.02 1.12 16 30 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 31 H 0.07 1.58 6.77 -2.39 -0.02 1.57 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 2.43 7.72 -2.91 -0.02 2.41 16 34 H 0.03 0.82 7.76 -2.39 -0.02 0.80 16 35 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 36 H 0.07 2.80 5.87 -2.38 -0.01 2.79 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 3.26 6.17 -2.39 -0.01 3.24 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 2.63 8.12 -2.39 -0.02 2.62 16 46 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.26 7.70 -2.38 -0.02 1.24 16 Total: -1.00 -61.26 369.41 3.30 -57.96 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.87 Total: 17.12 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 4.44 Total: -44.65 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.04 Total: -77.06 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.26 3.30 -57.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208177631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -61.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds