Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.52993 * 109.47134 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00202 * 270.00087 * 5 4 3 7 7 H 1.08000 * 120.00052 * 140.19858 * 6 5 4 8 8 C 1.38809 * 119.99848 * 320.19384 * 6 5 4 9 9 N 1.31619 * 119.99807 * 156.67941 * 8 6 5 10 10 Si 1.86802 * 120.00211 * 336.67676 * 8 6 5 11 11 H 1.48503 * 109.46926 * 95.19728 * 10 8 6 12 12 H 1.48500 * 109.47258 * 215.19948 * 10 8 6 13 13 H 1.48506 * 109.46942 * 335.20158 * 10 8 6 14 14 C 1.46507 * 119.99664 * 89.99675 * 5 4 3 15 15 C 1.52999 * 109.47108 * 264.57729 * 14 5 4 16 16 C 1.52998 * 109.46823 * 184.08663 * 15 14 5 17 17 C 1.53002 * 109.46897 * 175.89867 * 16 15 14 18 18 C 1.53003 * 109.47200 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47124 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00292 * 89.99981 * 19 18 17 21 21 C 1.38230 * 120.00016 * 179.97438 * 20 19 18 22 22 C 1.38230 * 120.00328 * 359.97438 * 21 20 19 23 23 C 1.38236 * 119.99602 * 0.27957 * 22 21 20 24 24 C 1.38231 * 120.00273 * 359.50701 * 23 22 21 25 25 H 1.08995 * 109.47263 * 59.99773 * 1 2 3 26 26 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47030 * 299.99451 * 1 2 3 28 28 H 1.09003 * 109.46549 * 240.00412 * 2 1 3 29 29 H 1.08995 * 109.47263 * 120.00227 * 2 1 3 30 30 H 1.08996 * 109.47124 * 60.00045 * 3 2 1 31 31 H 1.09007 * 109.46929 * 300.00269 * 3 2 1 32 32 H 1.09000 * 109.47394 * 60.00301 * 4 3 2 33 33 H 1.08998 * 109.47217 * 299.99642 * 4 3 2 34 34 H 0.97008 * 119.99933 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46617 * 144.57713 * 14 5 4 36 36 H 1.08998 * 109.46948 * 24.57945 * 14 5 4 37 37 H 1.09005 * 109.47125 * 64.08826 * 15 14 5 38 38 H 1.08999 * 109.46878 * 304.08597 * 15 14 5 39 39 H 1.09001 * 109.47276 * 55.90377 * 16 15 14 40 40 H 1.08993 * 109.47621 * 295.89692 * 16 15 14 41 41 H 1.09003 * 109.47223 * 60.00344 * 17 16 15 42 42 H 1.09004 * 109.47292 * 300.00155 * 17 16 15 43 43 H 1.09003 * 109.46718 * 60.00076 * 18 17 16 44 44 H 1.08994 * 109.47162 * 300.00358 * 18 17 16 45 45 H 1.08002 * 119.99584 * 359.97438 * 20 19 18 46 46 H 1.08010 * 119.99622 * 179.97438 * 21 20 19 47 47 H 1.07995 * 120.00331 * 179.97438 * 22 21 20 48 48 H 1.08007 * 119.99634 * 179.72183 * 23 22 21 49 49 H 1.08001 * 120.00164 * 180.27908 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2860 3.4690 -1.1874 7 1 4.0190 4.5098 -1.2960 8 6 4.8602 2.7853 -2.2503 9 7 4.6732 3.2079 -3.4826 10 14 5.8985 1.2654 -1.9316 11 1 5.0551 0.0513 -2.0729 12 1 7.0118 1.2118 -2.9128 13 1 6.4538 1.3249 -0.5556 14 6 4.3029 3.5147 1.2673 15 6 3.0735 4.3452 1.6410 16 6 3.3661 5.1460 2.9114 17 6 2.1754 6.0532 3.2279 18 6 2.4676 6.8535 4.4988 19 6 1.2945 7.7466 4.8109 20 6 0.2690 7.2851 5.6147 21 6 -0.8067 8.1045 5.9013 22 6 -0.8567 9.3857 5.3846 23 6 0.1663 9.8453 4.5765 24 6 1.2442 9.0275 4.2934 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.0742 2.7299 -4.2255 35 1 5.1668 4.1712 1.1626 36 1 4.4970 2.7807 2.0493 37 1 2.2266 3.6819 1.8165 38 1 2.8363 5.0298 0.8266 39 1 4.2569 5.7555 2.7598 40 1 3.5318 4.4608 3.7427 41 1 1.2844 5.4438 3.3797 42 1 2.0096 6.7385 2.3966 43 1 3.3586 7.4629 4.3475 44 1 2.6331 6.1680 5.3299 45 1 0.3082 6.2843 6.0187 46 1 -1.6082 7.7437 6.5291 47 1 -1.6973 10.0257 5.6082 48 1 0.1250 10.8448 4.1691 49 1 2.0456 9.3883 3.6657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209234364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 2.990067 kcal Electronic energy + Delta-G solvation = -22399.903522 eV Core-core repulsion = 19325.854888 eV Total energy + Delta-G solvation = -3074.048634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.43523 -36.98554 -35.53932 -33.94750 -32.56929 -31.31996 -31.02377 -29.31775 -27.88027 -25.68757 -23.81844 -22.70678 -22.68537 -21.12979 -20.78320 -20.33362 -20.03440 -16.88450 -16.63927 -15.72133 -15.47028 -15.28835 -14.78362 -14.55685 -14.11875 -13.70839 -13.57779 -13.43781 -13.35848 -13.20882 -12.68068 -12.61559 -12.38202 -12.12352 -11.88738 -11.60733 -11.46944 -11.44970 -11.16699 -11.00214 -10.95737 -10.68038 -10.54047 -10.45521 -10.37815 -10.28782 -10.14239 -9.81321 -9.62515 -9.34781 -9.06354 -8.79100 -8.41516 -6.67945 -5.96319 -3.37727 1.22754 1.25856 3.34972 3.49342 3.56145 3.64716 4.57421 4.64094 4.70000 4.84692 4.95518 4.99503 5.08734 5.23243 5.37012 5.38447 5.40983 5.43975 5.46367 5.55976 5.59375 5.63829 5.78380 5.87607 5.92577 5.95833 5.97445 6.03874 6.19627 6.23986 6.27959 6.29311 6.34047 6.36690 6.36899 6.37180 6.42153 6.52184 6.54720 6.57374 6.60818 6.70548 6.87846 6.90740 7.02415 7.13520 7.18375 8.13272 8.46163 9.07850 9.77675 10.21534 11.19485 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002959 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.500672 B = 9459.030077 C =10348.747333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.133 4.133 4 C 0.138 3.862 5 N -0.607 5.607 6 C -0.265 4.265 7 H 0.075 0.925 8 C 0.038 3.962 9 N -0.900 5.900 10 Si 0.875 3.125 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.270 1.270 14 C 0.149 3.851 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.083 4.083 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 6.011 17.834 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.173 4.173 4 C 0.012 3.988 5 N -0.329 5.329 6 C -0.394 4.394 7 H 0.093 0.907 8 C -0.162 4.162 9 N -0.541 5.541 10 Si 0.705 3.295 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.195 1.195 14 C 0.023 3.977 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.764 6.002 17.642 20.592 hybrid contribution 0.425 -0.825 -0.028 0.929 sum -8.338 5.177 17.614 20.163 Atomic orbital electron populations 1.21749 0.96601 1.00571 1.01584 1.21535 0.95218 0.98498 1.01157 1.22172 0.98700 0.94533 1.01911 1.21190 0.92044 0.86773 0.98753 1.44125 1.75355 1.11198 1.02210 1.18691 1.35558 0.97372 0.87790 0.90740 1.25513 0.97734 0.97801 0.95190 1.69903 1.44412 1.41712 0.98033 0.86928 0.81031 0.83631 0.77884 1.21387 1.23029 1.19482 1.20889 0.94903 0.94404 0.87468 1.22191 1.00363 0.99052 0.95979 1.21579 0.97518 0.97945 0.98437 1.21580 0.98955 0.98080 0.96220 1.20699 0.95209 0.97315 0.98830 1.20033 0.96418 0.94626 0.96442 1.21077 0.94091 0.99733 0.98871 1.21136 0.98212 0.94335 1.00123 1.21116 0.98903 0.96232 0.98629 1.21155 0.94329 0.99775 0.98450 1.21113 0.98660 0.93859 1.00021 0.92812 0.93596 0.93189 0.92480 0.92886 0.92967 0.91525 0.93082 0.94825 0.92817 0.93340 0.94800 0.92962 0.91903 0.92220 0.92679 0.92185 0.91885 0.90990 0.91145 0.86164 0.86287 0.86379 0.86215 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.13 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.57 5.54 -26.73 -0.15 -2.72 16 4 C 0.14 3.02 4.56 -4.04 -0.02 3.00 16 5 N -0.61 -14.41 2.04 -173.24 -0.35 -14.76 16 6 C -0.27 -7.42 9.87 -15.06 -0.15 -7.57 16 7 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 8 C 0.04 1.11 5.27 -17.43 -0.09 1.01 16 9 N -0.90 -27.58 13.97 55.49 0.78 -26.80 16 10 Si 0.88 22.46 25.24 -169.99 -4.29 18.17 16 11 H -0.29 -7.15 6.67 56.52 0.38 -6.77 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.15 2.96 5.72 -4.04 -0.02 2.93 16 15 C -0.14 -2.33 5.51 -26.73 -0.15 -2.48 16 16 C -0.12 -1.56 5.21 -26.73 -0.14 -1.70 16 17 C -0.11 -1.34 5.20 -26.73 -0.14 -1.48 16 18 C -0.08 -0.86 5.34 -27.88 -0.15 -1.01 16 19 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 20 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 21 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 22 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.95 6.76 -51.93 -0.35 0.60 16 31 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.05 1.23 3.64 -51.93 -0.19 1.04 16 33 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 35 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 36 H 0.03 0.61 7.83 -51.93 -0.41 0.21 16 37 H 0.05 0.90 6.76 -51.93 -0.35 0.54 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 44 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.35 388.22 -10.62 -40.98 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -9.31 Total: -0.30 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.29 Total: -23.13 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.42 Total: -41.57 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.29 Total: 18.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.35 -10.62 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209234364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.966 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds