Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.52993 * 109.47134 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00202 * 270.00087 * 5 4 3 7 7 H 1.08000 * 120.00052 * 140.19858 * 6 5 4 8 8 C 1.38809 * 119.99848 * 320.19384 * 6 5 4 9 9 N 1.31619 * 119.99807 * 156.67941 * 8 6 5 10 10 Si 1.86802 * 120.00211 * 336.67676 * 8 6 5 11 11 H 1.48503 * 109.46926 * 95.19728 * 10 8 6 12 12 H 1.48500 * 109.47258 * 215.19948 * 10 8 6 13 13 H 1.48506 * 109.46942 * 335.20158 * 10 8 6 14 14 C 1.46507 * 119.99664 * 89.99675 * 5 4 3 15 15 C 1.52999 * 109.47108 * 264.57729 * 14 5 4 16 16 C 1.52998 * 109.46823 * 184.08663 * 15 14 5 17 17 C 1.53002 * 109.46897 * 175.89867 * 16 15 14 18 18 C 1.53003 * 109.47200 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47124 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00292 * 89.99981 * 19 18 17 21 21 C 1.38230 * 120.00016 * 179.97438 * 20 19 18 22 22 C 1.38230 * 120.00328 * 359.97438 * 21 20 19 23 23 C 1.38236 * 119.99602 * 0.27957 * 22 21 20 24 24 C 1.38231 * 120.00273 * 359.50701 * 23 22 21 25 25 H 1.08995 * 109.47263 * 59.99773 * 1 2 3 26 26 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47030 * 299.99451 * 1 2 3 28 28 H 1.09003 * 109.46549 * 240.00412 * 2 1 3 29 29 H 1.08995 * 109.47263 * 120.00227 * 2 1 3 30 30 H 1.08996 * 109.47124 * 60.00045 * 3 2 1 31 31 H 1.09007 * 109.46929 * 300.00269 * 3 2 1 32 32 H 1.09000 * 109.47394 * 60.00301 * 4 3 2 33 33 H 1.08998 * 109.47217 * 299.99642 * 4 3 2 34 34 H 0.97008 * 119.99933 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46617 * 144.57713 * 14 5 4 36 36 H 1.08998 * 109.46948 * 24.57945 * 14 5 4 37 37 H 1.09005 * 109.47125 * 64.08826 * 15 14 5 38 38 H 1.08999 * 109.46878 * 304.08597 * 15 14 5 39 39 H 1.09001 * 109.47276 * 55.90377 * 16 15 14 40 40 H 1.08993 * 109.47621 * 295.89692 * 16 15 14 41 41 H 1.09003 * 109.47223 * 60.00344 * 17 16 15 42 42 H 1.09004 * 109.47292 * 300.00155 * 17 16 15 43 43 H 1.09003 * 109.46718 * 60.00076 * 18 17 16 44 44 H 1.08994 * 109.47162 * 300.00358 * 18 17 16 45 45 H 1.08002 * 119.99584 * 359.97438 * 20 19 18 46 46 H 1.08010 * 119.99622 * 179.97438 * 21 20 19 47 47 H 1.07995 * 120.00331 * 179.97438 * 22 21 20 48 48 H 1.08007 * 119.99634 * 179.72183 * 23 22 21 49 49 H 1.08001 * 120.00164 * 180.27908 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2860 3.4690 -1.1874 7 1 4.0190 4.5098 -1.2960 8 6 4.8602 2.7853 -2.2503 9 7 4.6732 3.2079 -3.4826 10 14 5.8985 1.2654 -1.9316 11 1 5.0551 0.0513 -2.0729 12 1 7.0118 1.2118 -2.9128 13 1 6.4538 1.3249 -0.5556 14 6 4.3029 3.5147 1.2673 15 6 3.0735 4.3452 1.6410 16 6 3.3661 5.1460 2.9114 17 6 2.1754 6.0532 3.2279 18 6 2.4676 6.8535 4.4988 19 6 1.2945 7.7466 4.8109 20 6 0.2690 7.2851 5.6147 21 6 -0.8067 8.1045 5.9013 22 6 -0.8567 9.3857 5.3846 23 6 0.1663 9.8453 4.5765 24 6 1.2442 9.0275 4.2934 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.0742 2.7299 -4.2255 35 1 5.1668 4.1712 1.1626 36 1 4.4970 2.7807 2.0493 37 1 2.2266 3.6819 1.8165 38 1 2.8363 5.0298 0.8266 39 1 4.2569 5.7555 2.7598 40 1 3.5318 4.4608 3.7427 41 1 1.2844 5.4438 3.3797 42 1 2.0096 6.7385 2.3966 43 1 3.3586 7.4629 4.3475 44 1 2.6331 6.1680 5.3299 45 1 0.3082 6.2843 6.0187 46 1 -1.6082 7.7437 6.5291 47 1 -1.6973 10.0257 5.6082 48 1 0.1250 10.8448 4.1691 49 1 2.0456 9.3883 3.6657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209234364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -9.917235 kcal Electronic energy + Delta-G solvation = -22400.463225 eV Core-core repulsion = 19325.854888 eV Total energy + Delta-G solvation = -3074.608337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16825 -38.65009 -36.68722 -35.37188 -34.11564 -32.96891 -31.73611 -30.50841 -29.36847 -27.10180 -25.42906 -23.94192 -23.42669 -22.33090 -22.10825 -21.61264 -21.44613 -18.67090 -17.59687 -17.37411 -16.66844 -16.24124 -16.05098 -15.90057 -15.56536 -15.09256 -14.88312 -14.50272 -14.35926 -14.29201 -14.25235 -13.94696 -13.65606 -13.45457 -13.26848 -12.93577 -12.86936 -12.72065 -12.49721 -12.35637 -12.03265 -11.94209 -11.88885 -11.84317 -11.76231 -11.64488 -11.52788 -11.39756 -11.34472 -11.02354 -10.56676 -9.79534 -9.54775 -8.64157 -8.20044 -5.58155 0.48616 0.52613 1.30280 1.39810 1.52012 2.43124 2.90364 3.03070 3.42553 3.83980 3.95621 4.08188 4.12798 4.16826 4.20064 4.28600 4.32121 4.36187 4.40678 4.43159 4.49195 4.64413 4.67852 4.73327 4.78460 4.81432 4.85335 4.94072 5.00705 5.01066 5.03713 5.05323 5.12752 5.15461 5.16464 5.23343 5.25414 5.36528 5.42589 5.46628 5.52564 5.60459 5.61294 5.65118 5.66820 5.79173 5.98267 6.16930 6.20885 7.05208 7.68224 8.11427 9.00146 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002959 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.500672 B = 9459.030077 C =10348.747333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.123 4.123 4 C 0.131 3.869 5 N -0.620 5.620 6 C -0.253 4.253 7 H 0.033 0.967 8 C -0.018 4.018 9 N -0.949 5.949 10 Si 0.941 3.059 11 H -0.275 1.275 12 H -0.308 1.308 13 H -0.258 1.258 14 C 0.145 3.855 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.075 4.075 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.130 4.130 24 C -0.137 4.137 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.027 0.973 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.136 0.864 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 4.556 20.879 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.163 4.163 4 C 0.006 3.994 5 N -0.342 5.342 6 C -0.383 4.383 7 H 0.051 0.949 8 C -0.215 4.215 9 N -0.593 5.593 10 Si 0.770 3.230 11 H -0.201 1.201 12 H -0.237 1.237 13 H -0.182 1.182 14 C 0.020 3.980 15 C -0.163 4.163 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.155 4.155 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.417 4.539 20.733 23.219 hybrid contribution 0.539 -0.277 -0.936 1.115 sum -8.877 4.263 19.797 22.111 Atomic orbital electron populations 1.21718 0.94805 1.02075 1.01589 1.21514 0.96831 0.95983 1.01754 1.22014 0.96939 0.96699 1.00619 1.21322 0.93623 0.85484 0.98949 1.44275 1.75865 1.11993 1.02103 1.18533 1.34211 0.95974 0.89600 0.94886 1.26119 0.99110 1.01462 0.94792 1.70029 1.46223 1.44021 0.99021 0.85856 0.78928 0.80371 0.77854 1.20149 1.23694 1.18242 1.21075 0.95589 0.94977 0.86385 1.21996 0.99187 0.98413 0.96712 1.21491 0.98005 0.98044 0.96962 1.21472 0.98309 0.97688 0.96691 1.20611 0.95288 0.97300 0.98069 1.20155 0.96931 0.94901 0.97208 1.21321 0.94194 1.00528 0.98894 1.21465 0.98540 0.94376 1.00142 1.21457 0.99345 0.96612 0.98074 1.21440 0.94228 1.00523 0.98564 1.21314 0.99344 0.94302 1.00522 0.93954 0.91346 0.92116 0.93533 0.90596 0.91770 0.95272 0.95380 0.91831 0.92917 0.94415 0.91868 0.92707 0.95365 0.92202 0.90491 0.92265 0.93624 0.90754 0.89819 0.84978 0.84217 0.84249 0.84652 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.67 5.93 30.59 0.18 -3.49 16 3 C -0.12 -4.60 5.54 30.59 0.17 -4.43 16 4 C 0.13 5.53 4.56 86.38 0.39 5.92 16 5 N -0.62 -29.29 2.04 -702.00 -1.43 -30.72 16 6 C -0.25 -14.63 9.87 84.03 0.83 -13.80 16 7 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 8 C -0.02 -1.09 5.27 84.86 0.45 -0.65 16 9 N -0.95 -60.46 13.97 21.65 0.30 -60.15 16 10 Si 0.94 46.95 25.24 68.60 1.73 48.69 16 11 H -0.27 -13.06 6.67 99.48 0.66 -12.40 16 12 H -0.31 -15.55 7.11 99.48 0.71 -14.85 16 13 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 14 C 0.14 5.55 5.72 86.38 0.49 6.05 16 15 C -0.12 -4.17 5.51 30.59 0.17 -4.00 16 16 C -0.11 -2.70 5.21 30.59 0.16 -2.54 16 17 C -0.10 -2.43 5.20 30.60 0.16 -2.27 16 18 C -0.08 -1.46 5.34 29.85 0.16 -1.30 16 19 C -0.09 -1.90 5.13 -19.87 -0.10 -2.00 16 20 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 21 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 22 C -0.14 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.14 -2.81 9.70 22.27 0.22 -2.60 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.22 6.76 -2.39 -0.02 2.21 16 31 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.03 1.32 3.64 -2.39 -0.01 1.31 16 33 H 0.06 2.31 7.86 -2.39 -0.02 2.29 16 34 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 35 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.06 2.08 7.83 -2.39 -0.02 2.06 16 37 H 0.05 1.81 6.76 -2.38 -0.02 1.79 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 44 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 45 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 49 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -67.77 388.22 6.30 -61.47 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.82 Total: 17.15 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 4.88 Total: -36.43 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -1.13 Total: -90.88 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.73 Total: 48.69 kcal Total: -67.77 6.30 -61.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209234364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds