Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34974 * 116.99631 * 2 1 4 4 O 1.21698 * 120.00291 * 0.02562 * 3 2 1 5 5 C 1.41474 * 119.99716 * 180.02562 * 3 2 1 6 6 S 1.75822 * 125.48202 * 359.97438 * 5 3 2 7 7 C 1.70575 * 91.66583 * 180.02562 * 6 5 3 8 8 C 1.33647 * 111.15761 * 359.73055 * 7 6 5 9 9 C 1.37397 * 125.48262 * 180.02562 * 5 3 2 10 10 O 1.35761 * 123.47607 * 359.97438 * 9 5 3 11 11 C 1.42902 * 116.99612 * 179.97438 * 10 9 5 12 12 H 1.08995 * 109.46708 * 30.00594 * 11 10 9 13 13 C 1.50705 * 109.46656 * 150.00195 * 11 10 9 14 14 H 1.08001 * 120.00024 * 5.33450 * 13 11 10 15 15 C 1.37874 * 119.99808 * 185.33946 * 13 11 10 16 16 N 1.31519 * 119.99698 * 185.35615 * 15 13 11 17 17 Si 1.86801 * 120.00177 * 5.35427 * 15 13 11 18 18 H 1.48507 * 109.46878 * 270.00156 * 17 15 13 19 19 H 1.48496 * 109.47011 * 29.99969 * 17 15 13 20 20 H 1.48503 * 109.47071 * 150.00346 * 17 15 13 21 21 C 1.52995 * 109.47582 * 269.99984 * 11 10 9 22 22 Cl 1.80304 * 109.46843 * 65.52180 * 21 11 10 23 23 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46795 * 299.99402 * 1 2 3 25 25 H 1.08998 * 109.47197 * 59.99472 * 1 2 3 26 26 H 1.07997 * 124.41847 * 179.97438 * 7 6 5 27 27 H 1.07999 * 122.44950 * 180.27118 * 8 7 6 28 28 H 0.97003 * 120.00017 * 354.98622 * 16 15 13 29 29 H 1.08997 * 109.47206 * 185.51898 * 21 11 10 30 30 H 1.08995 * 109.47250 * 305.52453 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3789 2.2233 0.0005 5 6 3.4545 1.2767 -0.0005 6 16 4.5486 -0.0996 -0.0006 7 6 5.9142 0.9226 -0.0006 8 6 5.5534 2.2094 -0.0064 9 6 4.1924 2.4358 -0.0001 10 8 3.6393 3.6756 0.0004 11 6 4.5378 4.7867 0.0014 12 1 5.4584 4.5099 -0.5123 13 6 3.8971 5.9515 -0.7085 14 1 2.8726 5.8825 -1.0434 15 6 4.6188 7.1050 -0.9307 16 7 4.0304 8.1581 -1.4547 17 14 6.4322 7.1723 -0.4874 18 1 6.5823 7.6438 0.9128 19 1 7.0246 5.8170 -0.6195 20 1 7.1311 8.1096 -1.4029 21 6 4.8581 5.1825 1.4442 22 17 5.7692 3.8486 2.2451 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 6.9367 0.5752 -0.0003 27 1 6.2746 3.0134 -0.0117 28 1 3.1088 8.1010 -1.7520 29 1 5.4638 6.0887 1.4464 30 1 3.9298 5.3646 1.9856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226265410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = -95.525152 kcal Electronic energy + Delta-G solvation = -19046.306785 eV Core-core repulsion = 15767.255192 eV Total energy + Delta-G solvation = -3279.051593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28053 -39.29274 -36.28972 -35.76454 -35.23456 -33.37183 -30.82204 -29.78275 -27.31208 -25.05610 -24.41122 -22.33081 -21.25755 -18.75250 -18.66424 -18.02765 -16.94628 -16.21703 -15.95957 -15.65872 -15.09247 -14.60483 -13.91904 -13.70175 -13.40554 -13.16913 -13.05551 -12.94317 -12.54660 -12.24583 -11.93017 -11.68454 -11.23349 -11.13310 -10.81077 -10.70964 -10.48639 -10.16797 -10.09750 -9.90691 -9.66876 -9.06506 -8.83699 -8.60986 -7.59927 -6.86854 -4.54818 0.69875 1.72643 2.06003 2.57922 2.80300 3.07620 3.12907 3.15010 3.27130 3.40606 4.01568 4.10668 4.85559 4.90458 5.24225 5.32520 5.39725 5.46668 5.56694 5.64515 5.68425 5.79494 5.98184 6.08366 6.37987 6.53814 6.71173 7.24656 7.85653 8.07457 8.19831 8.60353 9.16455 10.55093 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.006424 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.843108 B = 4357.579925 C = 5154.329223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.541 3.459 4 O -0.490 6.490 5 C -0.346 4.346 6 S 0.210 5.790 7 C -0.195 4.195 8 C -0.198 4.198 9 C 0.235 3.765 10 O -0.249 6.249 11 C 0.180 3.820 12 H 0.048 0.952 13 C -0.597 4.597 14 H 0.080 0.920 15 C 0.038 3.962 16 N -0.884 5.884 17 Si 1.033 2.967 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.054 4.054 22 Cl -0.223 7.223 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.277 0.723 29 H 0.097 0.903 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -15.299 3.745 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.388 3.612 4 O -0.379 6.379 5 C -0.463 4.463 6 S 0.474 5.526 7 C -0.332 4.332 8 C -0.232 4.232 9 C 0.172 3.828 10 O -0.159 6.159 11 C 0.123 3.877 12 H 0.065 0.935 13 C -0.635 4.635 14 H 0.098 0.902 15 C -0.170 4.170 16 N -0.516 5.516 17 Si 0.860 3.140 18 H -0.200 1.200 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.117 4.117 22 Cl -0.197 7.197 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.188 0.812 27 H 0.175 0.825 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.481 -15.525 3.841 16.367 hybrid contribution -1.004 0.792 0.113 1.284 sum 2.477 -14.733 3.954 15.454 Atomic orbital electron populations 1.22776 0.77424 1.02948 1.02359 1.86156 1.22860 1.33368 1.85759 1.18132 0.87283 0.81566 0.74242 1.90977 1.65800 1.35144 1.45978 1.21246 0.94558 0.96133 1.34324 1.82810 0.92184 1.06161 1.71474 1.25069 1.04899 0.97896 1.05362 1.20351 0.95505 0.98467 1.08863 1.18529 0.90236 0.86539 0.87481 1.86424 1.35905 1.10192 1.83361 1.21158 0.91337 0.84488 0.90710 0.93494 1.21968 1.02366 0.98365 1.40763 0.90217 1.25775 1.05613 0.91150 0.94436 1.70778 1.15581 1.28623 1.36611 0.84163 0.75073 0.77207 0.77530 1.20035 1.19680 1.19936 1.26339 0.98042 0.90229 0.97061 1.98665 1.79667 1.57211 1.84164 0.88527 0.92412 0.92356 0.81191 0.82464 0.91224 0.88521 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.45 101.05 1.06 1.54 16 2 O -0.36 -5.80 10.23 -41.25 -0.42 -6.22 16 3 C 0.54 10.58 7.72 31.96 0.25 10.82 16 4 O -0.49 -11.29 15.61 -25.54 -0.40 -11.69 16 5 C -0.35 -6.44 6.28 -38.66 -0.24 -6.69 16 6 S 0.21 2.85 22.82 -107.50 -2.45 0.40 16 7 C -0.19 -2.62 10.90 29.12 0.32 -2.30 16 8 C -0.20 -3.38 6.86 -41.29 -0.28 -3.66 16 9 C 0.24 4.76 6.02 -39.98 -0.24 4.52 16 10 O -0.25 -5.94 8.62 -36.54 -0.31 -6.25 16 11 C 0.18 4.18 1.79 -27.88 -0.05 4.13 16 12 H 0.05 1.06 4.51 -51.93 -0.23 0.82 16 13 C -0.60 -16.18 9.24 -34.44 -0.32 -16.50 16 14 H 0.08 2.42 8.04 -52.49 -0.42 2.00 16 15 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 16 N -0.88 -25.42 13.70 55.43 0.76 -24.66 16 17 Si 1.03 22.63 25.33 -169.99 -4.31 18.33 16 18 H -0.27 -5.60 6.77 56.52 0.38 -5.21 16 19 H -0.27 -5.40 6.36 56.52 0.36 -5.04 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.05 -1.12 5.93 37.16 0.22 -0.90 16 22 Cl -0.22 -4.05 24.89 -51.86 -1.29 -5.34 16 23 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.16 2.70 5.36 -52.49 -0.28 2.42 16 28 H 0.28 8.00 8.72 -40.82 -0.36 7.64 16 29 H 0.10 1.97 4.38 -51.93 -0.23 1.74 16 30 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -30.55 283.65 -6.03 -36.58 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.49 Total: 2.69 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 0.61 Total: -8.12 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.14 Total: -24.16 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.31 Total: 18.33 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.45 Total: 0.40 kcal Atomic # 17 Polarization: -4.05 SS G_CDS: -1.29 Total: -5.34 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.55 -6.03 -36.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226265410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.942 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds