Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34974 * 116.99631 * 2 1 4 4 O 1.21698 * 120.00291 * 0.02562 * 3 2 1 5 5 C 1.41474 * 119.99716 * 180.02562 * 3 2 1 6 6 S 1.75822 * 125.48202 * 359.97438 * 5 3 2 7 7 C 1.70575 * 91.66583 * 180.02562 * 6 5 3 8 8 C 1.33647 * 111.15761 * 359.73055 * 7 6 5 9 9 C 1.37397 * 125.48262 * 180.02562 * 5 3 2 10 10 O 1.35761 * 123.47607 * 359.97438 * 9 5 3 11 11 C 1.42902 * 116.99612 * 179.97438 * 10 9 5 12 12 H 1.08995 * 109.46708 * 30.00594 * 11 10 9 13 13 C 1.50705 * 109.46656 * 150.00195 * 11 10 9 14 14 H 1.08001 * 120.00024 * 5.33450 * 13 11 10 15 15 C 1.37874 * 119.99808 * 185.33946 * 13 11 10 16 16 N 1.31519 * 119.99698 * 185.35615 * 15 13 11 17 17 Si 1.86801 * 120.00177 * 5.35427 * 15 13 11 18 18 H 1.48507 * 109.46878 * 270.00156 * 17 15 13 19 19 H 1.48496 * 109.47011 * 29.99969 * 17 15 13 20 20 H 1.48503 * 109.47071 * 150.00346 * 17 15 13 21 21 C 1.52995 * 109.47582 * 269.99984 * 11 10 9 22 22 Cl 1.80304 * 109.46843 * 65.52180 * 21 11 10 23 23 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46795 * 299.99402 * 1 2 3 25 25 H 1.08998 * 109.47197 * 59.99472 * 1 2 3 26 26 H 1.07997 * 124.41847 * 179.97438 * 7 6 5 27 27 H 1.07999 * 122.44950 * 180.27118 * 8 7 6 28 28 H 0.97003 * 120.00017 * 354.98622 * 16 15 13 29 29 H 1.08997 * 109.47206 * 185.51898 * 21 11 10 30 30 H 1.08995 * 109.47250 * 305.52453 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3789 2.2233 0.0005 5 6 3.4545 1.2767 -0.0005 6 16 4.5486 -0.0996 -0.0006 7 6 5.9142 0.9226 -0.0006 8 6 5.5534 2.2094 -0.0064 9 6 4.1924 2.4358 -0.0001 10 8 3.6393 3.6756 0.0004 11 6 4.5378 4.7867 0.0014 12 1 5.4584 4.5099 -0.5123 13 6 3.8971 5.9515 -0.7085 14 1 2.8726 5.8825 -1.0434 15 6 4.6188 7.1050 -0.9307 16 7 4.0304 8.1581 -1.4547 17 14 6.4322 7.1723 -0.4874 18 1 6.5823 7.6438 0.9128 19 1 7.0246 5.8170 -0.6195 20 1 7.1311 8.1096 -1.4029 21 6 4.8581 5.1825 1.4442 22 17 5.7692 3.8486 2.2451 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 6.9367 0.5752 -0.0003 27 1 6.2746 3.0134 -0.0117 28 1 3.1088 8.1010 -1.7520 29 1 5.4638 6.0887 1.4464 30 1 3.9298 5.3646 1.9856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226265410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = -115.651095 kcal Electronic energy + Delta-G solvation = -19047.179512 eV Core-core repulsion = 15767.255192 eV Total energy + Delta-G solvation = -3279.924320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72036 -40.77957 -37.75892 -37.22995 -36.75962 -35.33057 -32.49525 -31.27140 -28.46112 -26.93182 -25.74480 -23.88564 -22.79632 -20.24801 -20.03594 -19.97386 -18.44739 -17.59234 -17.34436 -17.11431 -16.60056 -16.04281 -15.42256 -15.31734 -14.82356 -14.62851 -14.60091 -14.43821 -14.24616 -13.71667 -13.32742 -12.97698 -12.77731 -12.67316 -12.37496 -12.07881 -11.80070 -11.77016 -11.64093 -11.49550 -11.18828 -10.98577 -10.83582 -9.89036 -9.08480 -8.85068 -6.73291 -0.61129 0.49532 0.86253 1.16624 1.24235 1.35269 1.43844 1.58209 1.85836 1.96805 2.29939 2.47051 2.83083 3.71878 3.86787 4.00022 4.10589 4.16989 4.28611 4.29348 4.33028 4.59864 4.68858 4.79400 4.88976 5.12641 5.28783 5.37337 5.75811 6.11869 6.54433 6.77245 7.09992 8.37261 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.006424 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.843108 B = 4357.579925 C = 5154.329223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.538 3.462 4 O -0.543 6.543 5 C -0.387 4.387 6 S 0.308 5.692 7 C -0.166 4.166 8 C -0.230 4.230 9 C 0.206 3.794 10 O -0.289 6.289 11 C 0.186 3.814 12 H 0.061 0.939 13 C -0.611 4.611 14 H 0.023 0.977 15 C -0.004 4.004 16 N -0.915 5.915 17 Si 1.066 2.934 18 H -0.245 1.245 19 H -0.236 1.236 20 H -0.273 1.273 21 C -0.050 4.050 22 Cl -0.189 7.189 23 H 0.144 0.856 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.219 0.781 27 H 0.156 0.844 28 H 0.258 0.742 29 H 0.105 0.895 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -18.654 4.912 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.272 6.272 3 C 0.387 3.613 4 O -0.436 6.436 5 C -0.503 4.503 6 S 0.572 5.428 7 C -0.304 4.304 8 C -0.263 4.263 9 C 0.143 3.857 10 O -0.200 6.200 11 C 0.129 3.871 12 H 0.078 0.922 13 C -0.649 4.649 14 H 0.041 0.959 15 C -0.205 4.205 16 N -0.548 5.548 17 Si 0.883 3.117 18 H -0.169 1.169 19 H -0.159 1.159 20 H -0.199 1.199 21 C -0.113 4.113 22 Cl -0.163 7.163 23 H 0.162 0.838 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.236 0.764 27 H 0.173 0.827 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.573 -18.953 5.019 20.679 hybrid contribution -2.089 1.508 -0.264 2.590 sum 4.485 -17.445 4.754 18.629 Atomic orbital electron populations 1.23150 0.75490 1.05808 1.01884 1.86140 1.24742 1.31309 1.85029 1.18499 0.87966 0.81745 0.73085 1.90949 1.67117 1.36963 1.48551 1.21743 0.95267 0.98477 1.34824 1.82473 0.89547 1.02483 1.68287 1.25679 1.07340 0.96553 1.00799 1.20247 0.93752 1.00061 1.12192 1.18989 0.92115 0.85328 0.89254 1.86342 1.37042 1.11842 1.84803 1.20866 0.91033 0.83356 0.91798 0.92185 1.22012 1.00150 1.00921 1.41782 0.95865 1.27369 1.09812 0.90191 0.93109 1.70912 1.14746 1.30083 1.39062 0.83868 0.69519 0.79346 0.78939 1.16941 1.15893 1.19853 1.25810 0.98449 0.91219 0.95785 1.98656 1.78602 1.55721 1.83313 0.83826 0.92854 0.93046 0.76436 0.82653 0.93252 0.87737 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.45 113.37 1.18 1.90 16 2 O -0.36 -10.94 10.23 -58.92 -0.60 -11.54 16 3 C 0.54 21.30 7.72 68.62 0.53 21.83 16 4 O -0.54 -26.43 15.61 25.04 0.39 -26.04 16 5 C -0.39 -14.07 6.28 22.87 0.14 -13.92 16 6 S 0.31 7.06 22.82 -56.49 -1.29 5.77 16 7 C -0.17 -3.63 10.90 66.78 0.73 -2.91 16 8 C -0.23 -7.22 6.86 21.16 0.15 -7.08 16 9 C 0.21 8.26 6.02 22.01 0.13 8.39 16 10 O -0.29 -14.35 8.62 -74.10 -0.64 -14.99 16 11 C 0.19 8.82 1.79 29.85 0.05 8.87 16 12 H 0.06 2.66 4.51 -2.39 -0.01 2.65 16 13 C -0.61 -35.13 9.24 25.60 0.24 -34.89 16 14 H 0.02 1.54 8.04 -2.91 -0.02 1.52 16 15 C 0.00 -0.24 5.43 84.65 0.46 0.22 16 16 N -0.91 -55.29 13.70 21.45 0.29 -54.99 16 17 Si 1.07 44.33 25.33 68.60 1.74 46.07 16 18 H -0.24 -9.07 6.77 99.48 0.67 -8.39 16 19 H -0.24 -8.39 6.36 99.48 0.63 -7.76 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 C -0.05 -2.04 5.93 71.98 0.43 -1.62 16 22 Cl -0.19 -6.40 24.89 -2.72 -0.07 -6.47 16 23 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 25 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 27 H 0.16 4.87 5.36 -2.91 -0.02 4.86 16 28 H 0.26 16.09 8.72 -92.71 -0.81 15.29 16 29 H 0.10 4.10 4.38 -2.39 -0.01 4.09 16 30 H 0.09 3.84 8.14 -2.39 -0.02 3.83 16 Total: -1.00 -73.61 283.65 4.91 -68.70 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.04 Total: 12.68 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.04 Total: -19.20 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.29 Total: -54.99 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.85 Total: -52.57 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.74 Total: 46.07 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.29 Total: 5.77 kcal Atomic # 17 Polarization: -6.40 SS G_CDS: -0.07 Total: -6.47 kcal Total: -73.61 4.91 -68.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226265410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.948 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds