Wall clock time and date at job start Tue Mar 31 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00239 * 2 1 4 4 H 1.48496 * 109.46836 * 264.80510 * 3 2 1 5 5 H 1.48492 * 109.46902 * 24.80457 * 3 2 1 6 6 H 1.48499 * 109.46907 * 144.80491 * 3 2 1 7 7 C 1.37883 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99494 * 4.83230 * 7 2 1 9 9 C 1.50692 * 120.00144 * 184.83362 * 7 2 1 10 10 H 1.08998 * 109.47251 * 334.98958 * 9 7 2 11 11 C 1.53004 * 109.47434 * 94.99219 * 9 7 2 12 12 Cl 1.80297 * 109.47132 * 185.71404 * 11 9 7 13 13 O 1.42908 * 109.47261 * 214.99153 * 9 7 2 14 14 C 1.35721 * 117.00184 * 149.99766 * 13 9 7 15 15 N 1.32246 * 119.65552 * 0.02562 * 14 13 9 16 16 C 1.31952 * 121.67027 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.79780 * 359.97438 * 16 15 14 18 18 F 1.35106 * 120.37885 * 180.02562 * 17 16 15 19 19 C 1.38948 * 119.23961 * 0.02562 * 17 16 15 20 20 C 1.38428 * 118.46550 * 359.75135 * 19 17 16 21 21 N 1.48005 * 120.43080 * 180.25985 * 20 19 17 22 22 O 1.21799 * 120.00442 * 0.21378 * 21 20 19 23 23 O 1.21802 * 120.00094 * 180.20699 * 21 20 19 24 24 H 0.96997 * 119.99643 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46878 * 305.71183 * 11 9 7 26 26 H 1.09000 * 109.47181 * 65.71042 * 11 9 7 27 27 H 1.08001 * 119.60069 * 179.97438 * 16 15 14 28 28 H 1.08000 * 120.77063 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6065 1.9829 -1.3943 5 1 1.3961 2.6818 0.5873 6 1 3.4875 1.4742 0.8070 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0778 9 6 3.5074 -1.1964 0.1105 10 1 3.9001 -0.2484 -0.2571 11 6 3.9115 -1.3825 1.5744 12 17 5.7002 -1.2178 1.7298 13 8 4.0406 -2.2678 -0.6707 14 6 5.2758 -2.0867 -1.2032 15 7 5.9232 -0.9546 -0.9842 16 6 7.1257 -0.7367 -1.4820 17 6 7.7556 -1.6939 -2.2563 18 9 8.9871 -1.4621 -2.7613 19 6 7.1075 -2.8967 -2.5088 20 6 5.8489 -3.0944 -1.9674 21 7 5.1217 -4.3616 -2.2039 22 8 5.6318 -5.2404 -2.8754 23 8 4.0130 -4.5257 -1.7269 24 1 -0.4849 0.8400 0.0004 25 1 3.4223 -0.6240 2.1856 26 1 3.6071 -2.3731 1.9123 27 1 7.6239 0.2005 -1.2824 28 1 7.5763 -3.6612 -3.1105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226758108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:46 Heat of formation + Delta-G solvation = -68.028470 kcal Electronic energy + Delta-G solvation = -21176.245536 eV Core-core repulsion = 17364.465863 eV Total energy + Delta-G solvation = -3811.779673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.15271 -43.34256 -41.83203 -39.45642 -37.59387 -36.78172 -35.31188 -34.46351 -32.76802 -31.30988 -28.04657 -27.32559 -25.58005 -24.14289 -22.83362 -20.77740 -20.14340 -19.78698 -19.14625 -18.72112 -18.40272 -17.73469 -17.34528 -16.89796 -16.44851 -16.11016 -15.41678 -15.00750 -14.93310 -14.76780 -14.29588 -14.10283 -13.69950 -13.33165 -12.91735 -12.75939 -12.63865 -12.46261 -12.23794 -11.96457 -11.82514 -11.72492 -11.40861 -11.21364 -11.07669 -10.87623 -9.79983 -8.52623 -6.68976 -1.40782 -0.43091 0.08985 0.23076 1.23088 1.31840 1.37528 1.42261 1.66994 2.02719 2.17161 2.50080 2.75107 2.88816 3.19873 3.29558 3.59920 3.89899 4.03168 4.12912 4.28946 4.37565 4.83021 4.91433 5.10551 5.16258 5.70541 6.14926 6.23936 6.48500 6.51351 6.99613 8.61769 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.007048 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.040914 B = 3971.543856 C = 4608.601492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.042 3.958 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.230 1.230 7 C -0.539 4.539 8 H 0.046 0.954 9 C 0.184 3.816 10 H 0.074 0.926 11 C -0.032 4.032 12 Cl -0.202 7.202 13 O -0.277 6.277 14 C 0.378 3.622 15 N -0.503 5.503 16 C 0.186 3.814 17 C 0.019 3.981 18 F -0.107 7.107 19 C -0.004 4.004 20 C -0.128 4.128 21 N 0.044 4.956 22 O -0.146 6.146 23 O -0.196 6.196 24 H 0.280 0.720 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.227 0.773 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.885 1.569 -2.395 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.162 4.162 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.152 1.152 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.129 3.871 10 H 0.092 0.908 11 C -0.095 4.095 12 Cl -0.176 7.176 13 O -0.180 6.180 14 C 0.198 3.802 15 N -0.227 5.227 16 C 0.025 3.975 17 C -0.004 4.004 18 F -0.086 7.086 19 C -0.030 4.030 20 C -0.217 4.217 21 N 0.558 4.442 22 O -0.367 6.367 23 O -0.401 6.401 24 H 0.089 0.911 25 H 0.128 0.872 26 H 0.111 0.889 27 H 0.243 0.757 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 17.464 2.689 -1.701 17.751 hybrid contribution 0.013 -0.389 -0.533 0.660 sum 17.477 2.300 -2.233 17.768 Atomic orbital electron populations 1.69959 1.08164 1.29459 1.47305 1.25775 0.95562 1.02553 0.92264 0.86040 0.80334 0.78461 0.80486 1.18843 1.19593 1.15231 1.20744 0.88373 0.94750 1.53761 0.93590 1.20805 0.92743 0.87029 0.86521 0.90825 1.25520 0.78528 1.05484 0.99955 1.98649 1.21914 1.98731 1.98271 1.86794 1.24504 1.45036 1.61645 1.19966 0.86624 0.87756 0.85841 1.68198 1.11151 1.18818 1.24491 1.23846 0.87837 0.99736 0.86063 1.17980 0.84326 0.95020 1.03108 1.91613 1.37341 1.94309 1.85331 1.21497 0.89217 0.98266 0.94024 1.21102 0.97936 0.87609 1.15015 1.43357 1.00715 1.01834 0.98336 1.94419 1.70046 1.36236 1.35982 1.94738 1.05472 1.86545 1.53295 0.91061 0.87170 0.88949 0.75657 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 13.96 21.45 0.30 -51.92 15 2 C 0.04 2.21 5.47 84.66 0.46 2.67 15 3 Si 0.93 38.56 26.99 68.60 1.85 40.42 15 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.23 -8.60 6.82 99.48 0.68 -7.92 15 7 C -0.54 -29.06 9.23 25.60 0.24 -28.82 15 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 15 9 C 0.18 8.15 1.91 29.85 0.06 8.21 15 10 H 0.07 3.16 4.14 -2.39 -0.01 3.15 15 11 C -0.03 -1.22 6.31 71.98 0.45 -0.76 15 12 Cl -0.20 -6.64 25.94 -2.72 -0.07 -6.71 15 13 O -0.28 -12.25 7.77 -69.36 -0.54 -12.79 15 14 C 0.38 13.55 6.65 84.78 0.56 14.11 15 15 N -0.50 -15.16 6.34 -308.77 -1.96 -17.12 15 16 C 0.19 3.73 11.16 84.69 0.95 4.67 15 17 C 0.02 0.34 7.34 22.45 0.16 0.51 15 18 F -0.11 -1.70 17.28 44.97 0.78 -0.93 15 19 C 0.00 -0.08 9.65 22.49 0.22 0.14 15 20 C -0.13 -4.07 6.89 36.57 0.25 -3.82 15 21 N 0.04 1.61 4.45 -46.02 -0.20 1.40 15 22 O -0.15 -4.88 18.52 18.89 0.35 -4.53 15 23 O -0.20 -8.63 17.27 25.58 0.44 -8.19 15 24 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 25 H 0.11 4.04 8.14 -2.39 -0.02 4.02 15 26 H 0.09 3.55 8.14 -2.39 -0.02 3.53 15 27 H 0.23 2.53 8.06 -2.91 -0.02 2.51 15 28 H 0.20 3.21 7.69 -2.91 -0.02 3.19 15 Total: -1.00 -64.02 276.72 5.50 -58.51 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.20 Total: 4.93 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 3.35 Total: -3.09 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.86 Total: -67.63 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.25 Total: -25.50 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.85 Total: 40.42 kcal Atomic # 17 Polarization: -6.64 SS G_CDS: -0.07 Total: -6.71 kcal Total: -64.02 5.50 -58.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226758108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.516 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds