Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47484 * 2 1 4 4 C 1.52993 * 109.47484 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99433 * 90.00601 * 5 4 3 7 7 C 1.38240 * 119.99467 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.00275 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00202 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47075 * 89.99225 * 9 8 7 11 11 C 1.46901 * 110.99710 * 190.00107 * 10 9 8 12 12 C 1.50703 * 109.47014 * 170.09086 * 11 10 9 13 13 H 1.08003 * 119.99966 * 355.07438 * 12 11 10 14 14 C 1.37882 * 119.99962 * 175.07819 * 12 11 10 15 15 N 1.31507 * 119.99890 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47412 * 59.99993 * 16 14 12 18 18 H 1.48502 * 109.47272 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47338 * 299.99652 * 16 14 12 20 20 C 1.46904 * 110.99596 * 66.05359 * 10 9 8 21 21 C 1.52994 * 109.47362 * 63.37965 * 20 10 9 22 22 C 1.52996 * 109.47262 * 181.07234 * 21 20 10 23 23 C 1.38240 * 120.00264 * 0.25015 * 8 7 6 24 24 C 1.38232 * 120.00434 * 270.02501 * 5 4 3 25 25 H 1.08996 * 109.47631 * 59.99788 * 1 2 3 26 26 H 1.09007 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47040 * 299.99342 * 1 2 3 28 28 H 1.08999 * 109.47095 * 240.00313 * 2 1 3 29 29 H 1.08996 * 109.47631 * 120.00212 * 2 1 3 30 30 H 1.08999 * 109.46699 * 60.00070 * 3 2 1 31 31 H 1.08996 * 109.46859 * 300.00684 * 3 2 1 32 32 H 1.09007 * 109.47040 * 60.00658 * 4 3 2 33 33 H 1.08996 * 109.47631 * 300.00212 * 4 3 2 34 34 H 1.07992 * 120.00422 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.99527 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.46908 * 209.99917 * 9 8 7 37 37 H 1.09003 * 109.46382 * 330.00010 * 9 8 7 38 38 H 1.09003 * 109.47482 * 290.08587 * 11 10 9 39 39 H 1.08996 * 109.47383 * 50.09195 * 11 10 9 40 40 H 0.97005 * 120.00030 * 180.02562 * 15 14 12 41 41 H 1.09007 * 109.46892 * 183.38237 * 20 10 9 42 42 H 1.09000 * 109.47134 * 303.37864 * 20 10 9 43 43 H 1.09003 * 109.47440 * 301.07073 * 21 20 10 44 44 H 1.09003 * 109.47371 * 61.07411 * 21 20 10 45 45 H 1.08998 * 109.47514 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47482 * 300.00378 * 22 21 20 47 47 H 1.09002 * 109.47260 * 60.00047 * 22 21 20 48 48 H 1.07993 * 119.99883 * 179.72689 * 23 8 7 49 49 H 1.08001 * 120.00044 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3022 3.5155 1.1970 7 6 4.7635 4.8187 1.1964 8 6 4.9943 5.4697 -0.0009 9 6 5.4967 6.8906 -0.0015 10 7 6.9657 6.8906 -0.0008 11 6 7.4919 8.2413 0.2368 12 6 8.9785 8.1669 0.4726 13 1 9.4692 7.2063 0.5276 14 6 9.7123 9.3252 0.6183 15 7 9.1149 10.4948 0.5510 16 14 11.5547 9.2329 0.9114 17 1 12.2034 8.5385 -0.2298 18 1 12.1062 10.6064 1.0325 19 1 11.8197 8.4805 2.1640 20 6 7.4926 6.3332 -1.2537 21 6 7.0725 7.2237 -2.4247 22 6 7.5986 6.6288 -3.7323 23 6 4.7589 4.8194 -1.1979 24 6 4.3027 3.5145 -1.1974 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.1216 3.0071 2.1325 35 1 4.9428 5.3284 2.1316 36 1 5.1336 7.4039 -0.8919 37 1 5.1330 7.4048 0.8881 38 1 7.2931 8.8671 -0.6333 39 1 7.0062 8.6717 1.1125 40 1 9.6311 11.3097 0.6531 41 1 8.5806 6.2893 -1.2026 42 1 7.0950 5.3289 -1.4002 43 1 5.9848 7.2829 -2.4642 44 1 7.4860 8.2229 -2.2879 45 1 7.2989 7.2630 -4.5666 46 1 8.6863 6.5695 -3.6929 47 1 7.1851 5.6296 -3.8692 48 1 4.9351 5.3295 -2.1333 49 1 4.1223 3.0051 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231781628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -7.738234 kcal Electronic energy + Delta-G solvation = -22859.021082 eV Core-core repulsion = 19784.507234 eV Total energy + Delta-G solvation = -3074.513848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.50553 -37.39103 -35.78475 -32.91093 -32.75895 -31.58403 -30.65750 -29.22466 -26.93407 -26.05697 -24.36121 -22.85387 -22.42326 -22.07152 -21.33047 -20.46266 -19.13581 -16.27766 -15.95541 -15.76023 -15.19625 -15.06559 -14.92248 -14.47182 -14.22924 -14.10574 -13.57408 -13.39883 -13.21715 -13.03712 -12.94306 -12.56379 -12.38063 -11.98301 -11.68697 -11.51031 -11.40700 -11.33284 -11.23766 -11.05656 -10.98209 -10.82108 -10.74737 -10.73084 -10.61842 -10.52967 -10.33617 -9.89351 -9.67600 -9.19613 -8.63049 -8.41739 -8.24524 -7.10359 -6.00292 -4.00996 1.59093 1.67528 3.34725 3.38600 3.41903 3.96776 4.45499 4.58763 4.69165 4.86549 4.97547 5.06928 5.14924 5.21938 5.26656 5.32685 5.36081 5.49354 5.50957 5.52943 5.55166 5.59077 5.59927 5.74054 5.79522 5.80860 5.89082 5.90168 5.98084 6.06741 6.10288 6.14319 6.16678 6.30438 6.34876 6.40867 6.46402 6.54223 6.68149 6.78595 6.80738 6.97622 7.04084 7.27905 7.34725 7.45692 7.83825 8.12662 8.23940 8.58799 9.06893 9.62854 11.10231 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002943 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.365176 B = 9511.246213 C = 9934.378761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.077 4.077 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.098 4.098 8 C -0.061 4.061 9 C 0.084 3.916 10 N -0.529 5.529 11 C 0.189 3.811 12 C -0.503 4.503 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.065 3.935 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.112 4.112 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.003 0.997 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.117 0.883 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -16.783 -3.676 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.117 4.117 8 C -0.062 4.062 9 C -0.044 4.044 10 N -0.251 5.251 11 C 0.064 3.936 12 C -0.542 4.542 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.064 4.064 21 C -0.202 4.202 22 C -0.200 4.200 23 C -0.131 4.131 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.135 0.865 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.764 -16.864 -3.250 22.009 hybrid contribution 0.810 0.699 -0.511 1.186 sum -12.953 -16.165 -3.761 21.053 Atomic orbital electron populations 1.21778 0.95998 1.01412 1.01865 1.21556 0.95778 0.97044 1.01933 1.21604 0.94673 0.96427 1.02425 1.20564 0.95335 0.93071 1.02490 1.19744 1.00516 0.95895 0.93314 1.20950 1.00718 0.95006 0.97146 1.21038 0.98188 0.94455 0.97992 1.19956 0.96755 0.96645 0.92832 1.21083 0.91051 0.91409 1.00848 1.62383 1.03188 1.26926 1.32649 1.19797 0.95336 0.82596 0.95877 1.21100 0.92260 0.92523 1.48285 0.92034 1.24969 0.98584 0.95362 0.95676 1.69945 1.35916 0.97293 1.50766 0.86593 0.85318 0.76851 0.78832 1.20330 1.21431 1.20207 1.22074 1.01111 0.96234 0.86941 1.22176 0.99922 1.02274 0.95873 1.21652 1.01261 0.99825 0.97295 1.21066 0.99469 0.94759 0.97772 1.20894 1.00964 0.94947 0.97127 0.92775 0.92931 0.92756 0.92105 0.92073 0.91872 0.91917 0.91394 0.91326 0.86678 0.86055 0.94597 0.90811 0.97909 0.95810 0.92951 0.90331 0.92633 0.93147 0.90523 0.93647 0.92738 0.93576 0.86482 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 4 C -0.08 -0.73 5.34 -27.89 -0.15 -0.88 16 5 C -0.09 -1.16 5.13 -104.62 -0.54 -1.69 16 6 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 7 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 8 C -0.06 -0.99 4.88 -104.62 -0.51 -1.50 16 9 C 0.08 1.53 4.93 -4.97 -0.02 1.51 16 10 N -0.53 -11.37 4.69 -237.51 -1.11 -12.48 16 11 C 0.19 4.84 4.49 -4.97 -0.02 4.82 16 12 C -0.50 -14.05 8.40 -34.44 -0.29 -14.34 16 13 H 0.06 1.72 7.29 -52.48 -0.38 1.34 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.06 1.27 4.81 -3.82 -0.02 1.25 16 21 C -0.16 -2.95 5.20 -26.74 -0.14 -3.09 16 22 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 23 C -0.11 -1.63 7.92 -39.58 -0.31 -1.94 16 24 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.04 0.65 6.03 -51.93 -0.31 0.33 16 37 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 38 H 0.00 0.09 6.04 -51.93 -0.31 -0.23 16 39 H 0.02 0.66 7.93 -51.93 -0.41 0.24 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 1.70 6.94 -51.92 -0.36 1.34 16 42 H 0.06 1.01 5.95 -51.93 -0.31 0.70 16 43 H 0.05 0.85 5.72 -51.93 -0.30 0.56 16 44 H 0.08 1.63 6.35 -51.93 -0.33 1.30 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.12 1.64 7.35 -52.49 -0.39 1.25 16 49 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -29.15 383.02 -11.42 -40.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.98 Total: -0.02 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.81 Total: -24.72 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.38 Total: -38.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.15 -11.42 -40.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231781628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds