Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47484 * 2 1 4 4 C 1.52993 * 109.47484 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99433 * 90.00601 * 5 4 3 7 7 C 1.38240 * 119.99467 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.00275 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00202 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47075 * 89.99225 * 9 8 7 11 11 C 1.46901 * 110.99710 * 190.00107 * 10 9 8 12 12 C 1.50703 * 109.47014 * 170.09086 * 11 10 9 13 13 H 1.08003 * 119.99966 * 355.07438 * 12 11 10 14 14 C 1.37882 * 119.99962 * 175.07819 * 12 11 10 15 15 N 1.31507 * 119.99890 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47412 * 59.99993 * 16 14 12 18 18 H 1.48502 * 109.47272 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47338 * 299.99652 * 16 14 12 20 20 C 1.46904 * 110.99596 * 66.05359 * 10 9 8 21 21 C 1.52994 * 109.47362 * 63.37965 * 20 10 9 22 22 C 1.52996 * 109.47262 * 181.07234 * 21 20 10 23 23 C 1.38240 * 120.00264 * 0.25015 * 8 7 6 24 24 C 1.38232 * 120.00434 * 270.02501 * 5 4 3 25 25 H 1.08996 * 109.47631 * 59.99788 * 1 2 3 26 26 H 1.09007 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47040 * 299.99342 * 1 2 3 28 28 H 1.08999 * 109.47095 * 240.00313 * 2 1 3 29 29 H 1.08996 * 109.47631 * 120.00212 * 2 1 3 30 30 H 1.08999 * 109.46699 * 60.00070 * 3 2 1 31 31 H 1.08996 * 109.46859 * 300.00684 * 3 2 1 32 32 H 1.09007 * 109.47040 * 60.00658 * 4 3 2 33 33 H 1.08996 * 109.47631 * 300.00212 * 4 3 2 34 34 H 1.07992 * 120.00422 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.99527 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.46908 * 209.99917 * 9 8 7 37 37 H 1.09003 * 109.46382 * 330.00010 * 9 8 7 38 38 H 1.09003 * 109.47482 * 290.08587 * 11 10 9 39 39 H 1.08996 * 109.47383 * 50.09195 * 11 10 9 40 40 H 0.97005 * 120.00030 * 180.02562 * 15 14 12 41 41 H 1.09007 * 109.46892 * 183.38237 * 20 10 9 42 42 H 1.09000 * 109.47134 * 303.37864 * 20 10 9 43 43 H 1.09003 * 109.47440 * 301.07073 * 21 20 10 44 44 H 1.09003 * 109.47371 * 61.07411 * 21 20 10 45 45 H 1.08998 * 109.47514 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47482 * 300.00378 * 22 21 20 47 47 H 1.09002 * 109.47260 * 60.00047 * 22 21 20 48 48 H 1.07993 * 119.99883 * 179.72689 * 23 8 7 49 49 H 1.08001 * 120.00044 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3022 3.5155 1.1970 7 6 4.7635 4.8187 1.1964 8 6 4.9943 5.4697 -0.0009 9 6 5.4967 6.8906 -0.0015 10 7 6.9657 6.8906 -0.0008 11 6 7.4919 8.2413 0.2368 12 6 8.9785 8.1669 0.4726 13 1 9.4692 7.2063 0.5276 14 6 9.7123 9.3252 0.6183 15 7 9.1149 10.4948 0.5510 16 14 11.5547 9.2329 0.9114 17 1 12.2034 8.5385 -0.2298 18 1 12.1062 10.6064 1.0325 19 1 11.8197 8.4805 2.1640 20 6 7.4926 6.3332 -1.2537 21 6 7.0725 7.2237 -2.4247 22 6 7.5986 6.6288 -3.7323 23 6 4.7589 4.8194 -1.1979 24 6 4.3027 3.5145 -1.1974 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.1216 3.0071 2.1325 35 1 4.9428 5.3284 2.1316 36 1 5.1336 7.4039 -0.8919 37 1 5.1330 7.4048 0.8881 38 1 7.2931 8.8671 -0.6333 39 1 7.0062 8.6717 1.1125 40 1 9.6311 11.3097 0.6531 41 1 8.5806 6.2893 -1.2026 42 1 7.0950 5.3289 -1.4002 43 1 5.9848 7.2829 -2.4642 44 1 7.4860 8.2229 -2.2879 45 1 7.2989 7.2630 -4.5666 46 1 8.6863 6.5695 -3.6929 47 1 7.1851 5.6296 -3.8692 48 1 4.9351 5.3295 -2.1333 49 1 4.1223 3.0051 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231781628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -21.281599 kcal Electronic energy + Delta-G solvation = -22859.608366 eV Core-core repulsion = 19784.507234 eV Total energy + Delta-G solvation = -3075.101132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67174 -38.86359 -36.58349 -34.86989 -33.98690 -32.94700 -31.73363 -30.39488 -28.68162 -27.36122 -25.78430 -24.09950 -23.68489 -23.48364 -22.02704 -21.55855 -20.69445 -18.38003 -17.11325 -16.81937 -16.71544 -16.49370 -16.09708 -15.92344 -15.44053 -15.17971 -14.86352 -14.77518 -14.21694 -14.18805 -13.99563 -13.76764 -13.52998 -13.27128 -13.12793 -12.89286 -12.71116 -12.65878 -12.55553 -12.39483 -12.28186 -12.16395 -12.10327 -11.94006 -11.77989 -11.70909 -11.42231 -11.34892 -11.31629 -11.20557 -10.59066 -9.71533 -9.37849 -8.85060 -8.18533 -6.27969 0.48856 0.59445 1.39592 1.42469 1.50315 2.40154 2.85566 3.13472 3.55236 3.82614 3.92385 4.02719 4.09720 4.14127 4.19727 4.20991 4.26712 4.38162 4.41501 4.50257 4.56597 4.60758 4.70527 4.76070 4.80727 4.84561 4.88427 4.89398 5.02158 5.03139 5.05400 5.10498 5.17490 5.18941 5.26538 5.27431 5.32283 5.35297 5.42431 5.43514 5.50243 5.54889 5.60863 5.68076 5.80465 5.85024 6.08322 6.20774 6.38340 6.66639 6.88153 7.40989 8.91501 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002943 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.365176 B = 9511.246213 C = 9934.378761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.074 4.074 5 C -0.088 4.088 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.083 4.083 9 C 0.090 3.910 10 N -0.538 5.538 11 C 0.206 3.794 12 C -0.517 4.517 13 H 0.057 0.943 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.071 3.929 21 C -0.154 4.154 22 C -0.136 4.136 23 C -0.117 4.117 24 C -0.121 4.121 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.037 0.963 37 H 0.062 0.938 38 H -0.019 1.019 39 H -0.005 1.005 40 H 0.263 0.737 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -19.565 -4.603 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.088 4.088 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.083 4.083 9 C -0.038 4.038 10 N -0.261 5.261 11 C 0.080 3.920 12 C -0.556 4.556 13 H 0.075 0.925 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.057 4.057 21 C -0.193 4.193 22 C -0.194 4.194 23 C -0.136 4.136 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.055 0.945 37 H 0.080 0.920 38 H -0.001 1.001 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.140 0.860 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.033 -19.666 -4.183 24.519 hybrid contribution 0.784 1.496 -0.208 1.702 sum -13.249 -18.170 -4.391 22.912 Atomic orbital electron populations 1.21788 0.95767 1.01902 1.01728 1.21534 0.95977 0.96106 1.02435 1.21556 0.93916 0.97292 1.01966 1.20611 0.95839 0.91154 1.03548 1.20119 0.98826 0.97154 0.92715 1.21187 1.00034 0.94168 0.98634 1.21109 0.99091 0.95572 0.97450 1.19758 0.98984 0.95421 0.94165 1.21018 0.88868 0.93582 1.00313 1.62264 1.05437 1.24117 1.34283 1.19417 0.94509 0.84523 0.93597 1.21366 0.93442 0.92469 1.48308 0.92470 1.25850 1.03522 0.94897 0.95229 1.70072 1.37793 0.97978 1.51531 0.85509 0.79377 0.77131 0.79049 1.19324 1.20809 1.19504 1.22020 0.99562 0.97436 0.86693 1.22038 1.00393 0.99841 0.97066 1.21608 1.00859 1.01203 0.95717 1.21146 0.99690 0.95588 0.97152 1.21194 0.99913 0.94206 0.98526 0.92867 0.92164 0.92988 0.91508 0.91669 0.92507 0.92269 0.90178 0.90485 0.84713 0.86790 0.94517 0.91951 1.00111 0.98729 0.92784 0.92800 0.90464 0.92090 0.94572 0.92171 0.93347 0.91151 0.86027 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.42 5.93 30.59 0.18 -1.24 16 3 C -0.11 -1.56 5.20 30.59 0.16 -1.40 16 4 C -0.07 -1.16 5.34 29.85 0.16 -1.00 16 5 C -0.09 -1.91 5.13 -19.86 -0.10 -2.01 16 6 C -0.12 -2.99 9.70 22.27 0.22 -2.78 16 7 C -0.11 -3.40 9.70 22.27 0.22 -3.19 16 8 C -0.08 -2.65 4.88 -19.86 -0.10 -2.75 16 9 C 0.09 3.40 4.93 85.56 0.42 3.82 16 10 N -0.54 -24.04 4.69 -905.34 -4.25 -28.29 16 11 C 0.21 11.15 4.49 85.56 0.38 11.53 16 12 C -0.52 -29.90 8.40 25.60 0.22 -29.68 16 13 H 0.06 3.28 7.29 -2.91 -0.02 3.26 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 16 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C 0.07 2.82 4.81 86.30 0.41 3.23 16 21 C -0.15 -5.62 5.20 30.59 0.16 -5.46 16 22 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 23 C -0.12 -3.21 7.92 22.27 0.18 -3.04 16 24 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 33 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.04 1.36 6.03 -2.39 -0.01 1.35 16 37 H 0.06 2.44 7.88 -2.39 -0.02 2.42 16 38 H -0.02 -1.08 6.04 -2.39 -0.01 -1.10 16 39 H -0.01 -0.32 7.93 -2.39 -0.02 -0.34 16 40 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 41 H 0.05 2.39 6.94 -2.38 -0.02 2.37 16 42 H 0.08 2.73 5.95 -2.39 -0.01 2.72 16 43 H 0.06 2.07 5.72 -2.39 -0.01 2.05 16 44 H 0.04 1.60 6.35 -2.39 -0.02 1.59 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.12 3.16 7.35 -2.91 -0.02 3.14 16 49 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -64.40 383.02 3.55 -60.85 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.88 Total: 16.84 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.61 Total: -40.04 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.97 Total: -84.80 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.40 3.55 -60.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231781628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.569 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds