Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28999 * 124.90805 * 2 1 4 4 C 1.31819 * 117.13294 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.76163 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46912 * 90.02237 * 5 4 3 7 7 C 1.46493 * 120.00244 * 269.99605 * 6 5 4 8 8 C 1.36935 * 119.99844 * 90.00233 * 6 5 4 9 9 H 1.08001 * 120.00446 * 22.78108 * 8 6 5 10 10 C 1.38812 * 119.99761 * 202.79091 * 8 6 5 11 11 N 1.31619 * 120.00174 * 11.04397 * 10 8 6 12 12 Si 1.86803 * 119.99991 * 191.05152 * 10 8 6 13 13 H 1.48502 * 109.46997 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47730 * 119.99611 * 12 10 8 15 15 H 1.48503 * 109.46990 * 239.99390 * 12 10 8 16 16 C 1.33731 * 114.46807 * 359.97438 * 4 3 2 17 17 Br 1.89098 * 126.03854 * 180.02562 * 16 4 3 18 18 S 1.70983 * 124.90412 * 179.97438 * 2 1 3 19 19 H 1.09000 * 109.47515 * 90.00403 * 1 2 3 20 20 H 1.09004 * 109.47514 * 210.00327 * 1 2 3 21 21 H 1.09003 * 109.46859 * 329.99958 * 1 2 3 22 22 H 1.09002 * 109.47038 * 210.01979 * 5 4 3 23 23 H 1.08996 * 109.47301 * 330.01900 * 5 4 3 24 24 H 1.09001 * 109.47274 * 94.21359 * 7 6 5 25 25 H 1.09006 * 109.47276 * 214.21564 * 7 6 5 26 26 H 1.09007 * 109.47089 * 334.21588 * 7 6 5 27 27 H 0.97005 * 119.99853 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2452 1.0579 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5307 2.0248 0.0000 6 7 4.8480 2.3965 1.3811 7 6 4.0426 3.4070 2.0713 8 6 5.8976 1.7995 2.0269 9 1 6.6994 1.3538 1.4568 10 6 5.9310 1.7670 3.4142 11 7 4.8652 2.1093 4.1064 12 14 7.4888 1.2375 4.2988 13 1 8.5365 0.9054 3.3003 14 1 7.9652 2.3436 5.1675 15 1 7.2028 0.0420 5.1320 16 6 3.9354 -0.4014 0.0015 17 35 5.7196 -1.0278 0.0032 18 16 2.4853 -1.4022 0.0006 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 5.4432 1.7223 -0.5136 23 1 4.0905 2.8791 -0.5142 24 1 3.2576 2.9155 2.6460 25 1 4.6793 3.9821 2.7436 26 1 3.5915 4.0753 1.3376 27 1 4.8887 2.0869 5.0759 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233154789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = 69.416104 kcal Electronic energy + Delta-G solvation = -13813.445887 eV Core-core repulsion = 11359.411749 eV Total energy + Delta-G solvation = -2454.034138 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.33101 -35.50071 -32.63095 -31.09537 -30.38421 -27.70642 -25.90166 -25.77370 -22.78208 -20.94997 -18.90822 -17.51515 -16.52294 -15.09656 -14.77932 -14.41513 -13.54843 -13.46599 -13.27572 -12.89905 -12.39136 -12.13664 -11.88432 -11.31053 -11.18647 -10.89706 -10.63910 -10.58960 -10.27750 -10.06994 -9.94701 -9.61209 -9.12603 -8.67002 -8.56989 -8.03203 -6.83981 -5.77801 -3.18559 1.03868 1.45973 2.08605 2.42779 3.28750 3.38423 3.43654 3.45664 4.48369 4.50750 5.29089 5.42141 5.52836 5.62692 5.68810 5.83423 5.99321 6.43470 6.53162 6.71370 6.82525 7.38447 7.75968 7.82191 8.25060 8.33757 9.17899 9.78085 10.27493 11.26058 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.009303 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.156797 B = 3008.978554 C = 3878.760876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.049 3.951 3 N -0.455 5.455 4 C 0.105 3.895 5 C 0.205 3.795 6 N -0.575 5.575 7 C 0.164 3.836 8 C -0.241 4.241 9 H 0.079 0.921 10 C 0.004 3.996 11 N -0.900 5.900 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.289 1.289 16 C -0.235 4.235 17 Br 0.018 6.982 18 S 0.100 5.900 19 H 0.082 0.918 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.002 0.998 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -6.532 -9.641 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.230 4.230 3 N -0.171 5.171 4 C -0.033 4.033 5 C 0.074 3.926 6 N -0.294 5.294 7 C 0.020 3.980 8 C -0.371 4.371 9 H 0.097 0.903 10 C -0.195 4.195 11 N -0.544 5.544 12 Si 0.731 3.269 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.216 1.216 16 C -0.437 4.437 17 Br 0.100 6.900 18 S 0.351 5.649 19 H 0.100 0.900 20 H 0.095 0.905 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.313 -7.239 -9.410 12.631 hybrid contribution 0.825 0.259 0.939 1.276 sum -3.488 -6.980 -8.471 11.517 Atomic orbital electron populations 1.20385 0.85600 1.03998 1.03327 1.26975 1.01383 0.91301 1.03353 1.66314 1.04485 1.30839 1.15476 1.21990 0.90570 0.95394 0.95327 1.19889 0.92750 0.90782 0.89141 1.44324 1.32915 1.41754 1.10395 1.20849 0.94694 0.89331 0.93126 1.19447 0.96471 1.32195 0.89030 0.90334 1.25102 0.97147 1.00259 0.96988 1.70098 1.26842 1.51638 1.05780 0.86219 0.82895 0.78012 0.79817 1.19971 1.21497 1.21594 1.27151 0.95691 0.97409 1.23425 1.96566 1.08577 1.86955 1.97867 1.83561 0.97584 1.12720 1.71010 0.89960 0.90463 0.89370 0.91238 0.92200 0.95285 0.93308 0.97973 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.46 36.00 0.38 -0.49 15 2 C 0.05 0.84 7.39 -13.47 -0.10 0.74 15 3 N -0.46 -9.30 10.53 -8.04 -0.08 -9.38 15 4 C 0.10 2.24 6.33 -84.18 -0.53 1.71 15 5 C 0.21 4.48 5.87 -5.19 -0.03 4.45 15 6 N -0.58 -14.61 2.91 -182.50 -0.53 -15.14 15 7 C 0.16 4.17 9.01 59.84 0.54 4.71 15 8 C -0.24 -6.47 9.32 -15.06 -0.14 -6.61 15 9 H 0.08 2.06 7.44 -52.49 -0.39 1.67 15 10 C 0.00 0.12 5.13 -17.43 -0.09 0.03 15 11 N -0.90 -26.29 10.60 55.49 0.59 -25.70 15 12 Si 0.90 21.92 29.57 -169.99 -5.03 16.90 15 13 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 16 C -0.24 -4.72 7.05 29.15 0.21 -4.51 15 17 Br 0.02 0.33 32.26 -68.01 -2.19 -1.86 15 18 S 0.10 1.66 23.18 -107.50 -2.49 -0.83 15 19 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.07 1.44 7.25 -51.93 -0.38 1.07 15 23 H 0.06 1.22 7.86 -51.93 -0.41 0.81 15 24 H 0.03 0.81 7.41 -51.93 -0.38 0.42 15 25 H 0.05 1.30 7.21 -51.93 -0.37 0.92 15 26 H 0.00 0.04 7.84 -51.92 -0.41 -0.37 15 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 268.69 15.07 4.05 4.05 Total: -1.00 -30.46 268.69 -8.21 -38.66 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -2.74 Total: -6.71 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 0.23 Total: 0.02 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.03 Total: -50.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.49 Total: -0.83 kcal Atomic # 35 Polarization: 0.33 SS G_CDS: -2.19 Total: -1.86 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.46 -8.21 -38.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233154789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.079 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds