Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28999 * 124.90805 * 2 1 4 4 C 1.31819 * 117.13294 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.76163 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46912 * 90.02237 * 5 4 3 7 7 C 1.46493 * 120.00244 * 269.99605 * 6 5 4 8 8 C 1.36935 * 119.99844 * 90.00233 * 6 5 4 9 9 H 1.08001 * 120.00446 * 22.78108 * 8 6 5 10 10 C 1.38812 * 119.99761 * 202.79091 * 8 6 5 11 11 N 1.31619 * 120.00174 * 11.04397 * 10 8 6 12 12 Si 1.86803 * 119.99991 * 191.05152 * 10 8 6 13 13 H 1.48502 * 109.46997 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47730 * 119.99611 * 12 10 8 15 15 H 1.48503 * 109.46990 * 239.99390 * 12 10 8 16 16 C 1.33731 * 114.46807 * 359.97438 * 4 3 2 17 17 Br 1.89098 * 126.03854 * 180.02562 * 16 4 3 18 18 S 1.70983 * 124.90412 * 179.97438 * 2 1 3 19 19 H 1.09000 * 109.47515 * 90.00403 * 1 2 3 20 20 H 1.09004 * 109.47514 * 210.00327 * 1 2 3 21 21 H 1.09003 * 109.46859 * 329.99958 * 1 2 3 22 22 H 1.09002 * 109.47038 * 210.01979 * 5 4 3 23 23 H 1.08996 * 109.47301 * 330.01900 * 5 4 3 24 24 H 1.09001 * 109.47274 * 94.21359 * 7 6 5 25 25 H 1.09006 * 109.47276 * 214.21564 * 7 6 5 26 26 H 1.09007 * 109.47089 * 334.21588 * 7 6 5 27 27 H 0.97005 * 119.99853 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2452 1.0579 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5307 2.0248 0.0000 6 7 4.8480 2.3965 1.3811 7 6 4.0426 3.4070 2.0713 8 6 5.8976 1.7995 2.0269 9 1 6.6994 1.3538 1.4568 10 6 5.9310 1.7670 3.4142 11 7 4.8652 2.1093 4.1064 12 14 7.4888 1.2375 4.2988 13 1 8.5365 0.9054 3.3003 14 1 7.9652 2.3436 5.1675 15 1 7.2028 0.0420 5.1320 16 6 3.9354 -0.4014 0.0015 17 35 5.7196 -1.0278 0.0032 18 16 2.4853 -1.4022 0.0006 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 5.4432 1.7223 -0.5136 23 1 4.0905 2.8791 -0.5142 24 1 3.2576 2.9155 2.6460 25 1 4.6793 3.9821 2.7436 26 1 3.5915 4.0753 1.3376 27 1 4.8887 2.0869 5.0759 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233154789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = 50.474961 kcal Electronic energy + Delta-G solvation = -13814.267237 eV Core-core repulsion = 11359.411749 eV Total energy + Delta-G solvation = -2454.855488 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84823 -37.37523 -34.18179 -32.93774 -31.76259 -29.26072 -27.86807 -27.46858 -24.38851 -22.68703 -20.40463 -19.17267 -18.36436 -16.94650 -16.27566 -16.01901 -15.39133 -15.03627 -14.86856 -14.30612 -13.91167 -13.55959 -13.16673 -13.01429 -12.95381 -12.82465 -12.54283 -12.16079 -12.08391 -11.91509 -11.84709 -11.20523 -10.68735 -10.50861 -10.08789 -9.52566 -8.84476 -7.81788 -5.28425 -0.39337 0.02104 0.61433 0.94330 1.43758 1.45849 1.55125 1.78558 2.52262 3.19547 3.38381 3.78326 4.06401 4.23723 4.57107 4.68817 4.74299 4.86881 4.88612 5.00427 5.22184 5.31630 5.67123 5.73744 6.31823 6.78674 7.14599 7.81576 8.27770 9.22372 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.009303 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.156797 B = 3008.978554 C = 3878.760876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.053 3.947 3 N -0.492 5.492 4 C 0.091 3.909 5 C 0.206 3.794 6 N -0.594 5.594 7 C 0.185 3.815 8 C -0.237 4.237 9 H 0.083 0.917 10 C -0.049 4.049 11 N -0.939 5.939 12 Si 0.953 3.047 13 H -0.262 1.262 14 H -0.291 1.291 15 H -0.296 1.296 16 C -0.262 4.262 17 Br 0.023 6.977 18 S 0.163 5.837 19 H 0.112 0.888 20 H 0.103 0.897 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.070 0.930 24 H -0.004 1.004 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 -7.929 -10.964 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.226 4.226 3 N -0.209 5.209 4 C -0.047 4.047 5 C 0.077 3.923 6 N -0.315 5.315 7 C 0.040 3.960 8 C -0.367 4.367 9 H 0.100 0.900 10 C -0.244 4.244 11 N -0.586 5.586 12 Si 0.782 3.218 13 H -0.186 1.186 14 H -0.218 1.218 15 H -0.223 1.223 16 C -0.463 4.463 17 Br 0.106 6.894 18 S 0.416 5.584 19 H 0.130 0.870 20 H 0.121 0.879 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.014 0.986 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.177 -8.676 -10.789 14.781 hybrid contribution 0.928 0.569 1.108 1.553 sum -4.249 -8.107 -9.681 13.323 Atomic orbital electron populations 1.20673 0.81935 1.05252 1.05611 1.27938 1.03548 0.90826 1.00239 1.66332 1.04254 1.32468 1.17862 1.21784 0.91232 0.95544 0.96113 1.19834 0.93510 0.91719 0.87266 1.44319 1.33429 1.42649 1.11066 1.20499 0.93273 0.89222 0.92995 1.19619 0.97161 1.30839 0.89108 0.89979 1.25720 0.99429 1.01451 0.97812 1.70260 1.28537 1.54515 1.05250 0.85387 0.80494 0.77076 0.78837 1.18561 1.21795 1.22305 1.27463 0.97553 0.98433 1.22878 1.96557 1.08417 1.86614 1.97831 1.83320 0.94718 1.11002 1.69373 0.86962 0.87869 0.89403 0.90566 0.91179 0.98589 0.95611 0.95568 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.46 71.23 0.75 -0.75 15 2 C 0.05 1.65 7.39 88.52 0.65 2.31 15 3 N -0.49 -19.33 10.53 -179.33 -1.89 -21.22 15 4 C 0.09 3.78 6.33 41.54 0.26 4.04 15 5 C 0.21 8.87 5.87 85.63 0.50 9.38 15 6 N -0.59 -30.27 2.91 -731.31 -2.13 -32.39 15 7 C 0.19 9.55 9.01 127.77 1.15 10.70 15 8 C -0.24 -12.74 9.32 84.03 0.78 -11.96 15 9 H 0.08 4.26 7.44 -2.91 -0.02 4.24 15 10 C -0.05 -2.77 5.13 84.86 0.44 -2.34 15 11 N -0.94 -56.32 10.60 21.65 0.23 -56.09 15 12 Si 0.95 45.47 29.57 68.60 2.03 47.49 15 13 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 15 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 15 16 C -0.26 -10.09 7.05 66.80 0.47 -9.61 15 17 Br 0.02 0.83 32.26 -20.37 -0.66 0.18 15 18 S 0.16 4.95 23.18 -56.49 -1.31 3.64 15 19 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.08 3.11 7.25 -2.39 -0.02 3.09 15 23 H 0.07 2.81 7.86 -2.39 -0.02 2.79 15 24 H 0.00 -0.25 7.41 -2.39 -0.02 -0.27 15 25 H 0.03 1.40 7.21 -2.38 -0.02 1.38 15 26 H 0.03 1.18 7.84 -2.38 -0.02 1.16 15 27 H 0.24 14.38 8.31 -92.70 -0.77 13.61 15 Total: -1.00 -65.80 268.69 2.46 -63.34 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: 1.18 Total: -6.72 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.01 Total: 1.77 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.79 Total: -109.70 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.31 Total: 3.64 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -0.66 Total: 0.18 kcal Total: -65.80 2.46 -63.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233154789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.812 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds