Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38186 * 119.99402 * 2 1 4 4 C 1.38632 * 120.01417 * 180.29578 * 3 2 1 5 5 O 1.36007 * 120.00242 * 179.74920 * 4 3 2 6 6 C 1.38824 * 119.99042 * 359.72537 * 4 3 2 7 7 Cl 1.73601 * 120.00538 * 179.97438 * 6 4 3 8 8 C 1.38197 * 119.97877 * 0.02562 * 6 4 3 9 9 C 1.38674 * 119.99245 * 179.75037 * 2 1 3 10 10 O 1.35976 * 119.99120 * 359.97340 * 9 2 1 11 11 C 1.42897 * 117.00242 * 184.61184 * 10 9 2 12 12 H 1.09006 * 109.46899 * 21.77752 * 11 10 9 13 13 C 1.50697 * 109.47518 * 141.77764 * 11 10 9 14 14 H 1.08002 * 119.99946 * 95.36082 * 13 11 10 15 15 C 1.37877 * 120.00242 * 275.36353 * 13 11 10 16 16 N 1.31517 * 119.99779 * 355.27223 * 15 13 11 17 17 Si 1.86796 * 120.00275 * 175.27714 * 15 13 11 18 18 H 1.48496 * 109.47520 * 89.99473 * 17 15 13 19 19 H 1.48495 * 109.47409 * 209.99791 * 17 15 13 20 20 H 1.48506 * 109.47105 * 329.99831 * 17 15 13 21 21 C 1.53001 * 109.47365 * 261.78314 * 11 10 9 22 22 Cl 1.80297 * 109.47300 * 64.64821 * 21 11 10 23 23 H 1.09004 * 109.46792 * 270.25451 * 1 2 3 24 24 H 1.09007 * 109.47036 * 30.24716 * 1 2 3 25 25 H 1.08993 * 109.47289 * 150.24973 * 1 2 3 26 26 H 1.08004 * 119.99203 * 0.02562 * 3 2 1 27 27 H 0.96698 * 114.00201 * 269.97580 * 5 4 3 28 28 H 1.08005 * 120.00117 * 180.02562 * 8 6 4 29 29 H 0.97001 * 120.00051 * 5.25488 * 16 15 13 30 30 H 1.08995 * 109.47189 * 184.65294 * 21 11 10 31 31 H 1.09001 * 109.46912 * 304.65185 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1968 0.0000 4 6 3.5840 1.1973 -0.0062 5 8 4.2637 2.3754 -0.0114 6 6 4.2784 -0.0048 -0.0066 7 17 6.0144 -0.0047 -0.0151 8 6 3.5872 -1.2015 -0.0014 9 6 2.2001 -1.2010 0.0052 10 8 1.5199 -2.3784 0.0109 11 6 2.2943 -3.5746 0.1185 12 1 3.2641 -3.3412 0.5579 13 6 1.5708 -4.5643 0.9947 14 1 0.9447 -5.3232 0.5492 15 6 1.7081 -4.5011 2.3652 16 7 2.5418 -3.6380 2.9034 17 14 0.7102 -5.6414 3.4575 18 1 1.4699 -6.8963 3.6883 19 1 0.4471 -4.9757 4.7586 20 1 -0.5799 -5.9588 2.7941 21 6 2.4968 -4.1779 -1.2729 22 17 3.4808 -3.0510 -2.2792 23 1 -0.3633 0.0046 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8921 -0.5099 26 1 1.6575 2.1320 0.0004 27 1 4.4566 2.7143 -0.8962 28 1 4.1270 -2.1370 -0.0014 29 1 3.0030 -2.9947 2.3426 30 1 3.0157 -5.1322 -1.1831 31 1 1.5272 -4.3346 -1.7456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233591591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -86.774416 kcal Electronic energy + Delta-G solvation = -19164.632699 eV Core-core repulsion = 15883.916860 eV Total energy + Delta-G solvation = -3280.715839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89391 -38.06483 -36.16461 -35.90924 -35.17369 -33.33444 -32.00622 -30.15013 -28.55330 -26.23912 -24.88254 -23.18664 -21.27620 -20.88209 -17.84295 -17.73582 -17.31595 -15.92406 -15.17138 -14.82525 -14.52714 -14.13311 -13.95680 -13.40516 -13.22998 -12.96375 -12.72378 -12.44318 -12.29710 -12.10570 -11.72255 -11.49259 -11.19052 -11.01060 -10.80466 -10.50872 -10.43501 -10.30925 -10.22648 -9.87583 -9.46435 -9.14956 -8.70517 -8.30472 -7.31177 -6.82250 -4.67235 1.50152 1.69986 2.47386 2.84190 3.23324 3.29899 3.45113 3.91664 4.05728 4.28278 4.46027 5.09583 5.17051 5.32334 5.55304 5.61523 5.67488 5.80091 5.90284 6.02360 6.07926 6.13919 6.30902 6.40321 6.50229 6.59259 6.80769 7.05268 7.47064 7.83736 7.94528 8.31704 8.40574 9.12521 10.54497 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.006396 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.029363 B = 4376.445240 C = 4653.871798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.120 4.120 3 C -0.100 4.100 4 C 0.051 3.949 5 O -0.488 6.488 6 C -0.022 4.022 7 Cl -0.073 7.073 8 C -0.177 4.177 9 C 0.166 3.834 10 O -0.304 6.304 11 C 0.172 3.828 12 H 0.056 0.944 13 C -0.599 4.599 14 H 0.066 0.934 15 C 0.037 3.963 16 N -0.872 5.872 17 Si 1.078 2.922 18 H -0.282 1.282 19 H -0.279 1.279 20 H -0.283 1.283 21 C -0.030 4.030 22 Cl -0.216 7.216 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.378 0.622 28 H 0.145 0.855 29 H 0.275 0.725 30 H 0.099 0.901 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 5.715 -7.153 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.005 3.995 5 O -0.296 6.296 6 C -0.049 4.049 7 Cl -0.044 7.044 8 C -0.197 4.197 9 C 0.118 3.882 10 O -0.217 6.217 11 C 0.119 3.881 12 H 0.074 0.926 13 C -0.635 4.635 14 H 0.084 0.916 15 C -0.174 4.174 16 N -0.505 5.505 17 Si 0.904 3.096 18 H -0.208 1.208 19 H -0.205 1.205 20 H -0.208 1.208 21 C -0.092 4.092 22 Cl -0.190 7.190 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.232 0.768 28 H 0.162 0.838 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.125 5.229 -5.073 7.286 hybrid contribution 0.807 0.526 -2.208 2.409 sum 0.682 5.756 -7.281 9.306 Atomic orbital electron populations 1.20530 0.90329 1.02287 1.02290 1.19231 0.96746 0.90145 1.05997 1.20877 0.92162 0.97675 1.01134 1.17824 0.89544 0.83861 1.08249 1.84912 1.76364 1.35659 1.32651 1.21016 0.84157 0.94152 1.05563 1.98328 1.10227 1.98932 1.96900 1.21199 0.93883 0.97756 1.06829 1.18927 0.89533 0.88099 0.91667 1.86679 1.38271 1.11968 1.84770 1.20809 0.94978 0.81912 0.90427 0.92628 1.21875 1.34786 1.13825 0.93025 0.91573 1.26188 0.95530 0.99029 0.96612 1.70783 1.22154 1.17281 1.40315 0.83414 0.75543 0.75018 0.75632 1.20838 1.20462 1.20834 1.25249 0.96596 0.94042 0.93356 1.98681 1.76043 1.69223 1.75092 0.91431 0.92340 0.90821 0.84877 0.76838 0.83763 0.91326 0.88270 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.79 36.00 0.35 -1.19 16 2 C -0.12 -2.20 5.89 -104.48 -0.62 -2.81 16 3 C -0.10 -1.63 9.64 -39.46 -0.38 -2.01 16 4 C 0.05 0.86 6.70 -39.22 -0.26 0.60 16 5 O -0.49 -7.18 12.96 -19.76 -0.26 -7.43 16 6 C -0.02 -0.40 6.33 -39.38 -0.25 -0.65 16 7 Cl -0.07 -1.24 28.50 -51.86 -1.48 -2.71 16 8 C -0.18 -3.60 6.99 -39.42 -0.28 -3.88 16 9 C 0.17 3.47 6.16 -39.25 -0.24 3.22 16 10 O -0.30 -6.92 8.72 -19.66 -0.17 -7.09 16 11 C 0.17 3.93 1.87 -27.88 -0.05 3.87 16 12 H 0.06 1.36 4.00 -51.93 -0.21 1.15 16 13 C -0.60 -15.06 8.69 -34.44 -0.30 -15.36 16 14 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.04 0.95 5.45 -17.82 -0.10 0.85 16 16 N -0.87 -24.39 13.63 55.43 0.76 -23.63 16 17 Si 1.08 22.91 29.91 -169.99 -5.08 17.83 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.03 -0.57 6.31 37.16 0.23 -0.33 16 22 Cl -0.22 -3.93 25.72 -51.86 -1.33 -5.26 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.74 8.09 -51.92 -0.42 0.32 16 25 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 26 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 27 H 0.38 3.78 9.06 45.56 0.41 4.19 16 28 H 0.14 3.07 4.87 -52.48 -0.26 2.81 16 29 H 0.28 7.74 6.66 -40.82 -0.27 7.47 16 30 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -28.19 295.07 -7.04 -35.23 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.03 Total: 6.32 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.89 Total: -17.69 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.43 Total: -14.53 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.08 Total: 17.83 kcal Atomic # 17 Polarization: -5.17 SS G_CDS: -2.81 Total: -7.98 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.19 -7.04 -35.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233591591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.546 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds