Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38186 * 119.99402 * 2 1 4 4 C 1.38632 * 120.01417 * 180.29578 * 3 2 1 5 5 O 1.36007 * 120.00242 * 179.74920 * 4 3 2 6 6 C 1.38824 * 119.99042 * 359.72537 * 4 3 2 7 7 Cl 1.73601 * 120.00538 * 179.97438 * 6 4 3 8 8 C 1.38197 * 119.97877 * 0.02562 * 6 4 3 9 9 C 1.38674 * 119.99245 * 179.75037 * 2 1 3 10 10 O 1.35976 * 119.99120 * 359.97340 * 9 2 1 11 11 C 1.42897 * 117.00242 * 184.61184 * 10 9 2 12 12 H 1.09006 * 109.46899 * 21.77752 * 11 10 9 13 13 C 1.50697 * 109.47518 * 141.77764 * 11 10 9 14 14 H 1.08002 * 119.99946 * 95.36082 * 13 11 10 15 15 C 1.37877 * 120.00242 * 275.36353 * 13 11 10 16 16 N 1.31517 * 119.99779 * 355.27223 * 15 13 11 17 17 Si 1.86796 * 120.00275 * 175.27714 * 15 13 11 18 18 H 1.48496 * 109.47520 * 89.99473 * 17 15 13 19 19 H 1.48495 * 109.47409 * 209.99791 * 17 15 13 20 20 H 1.48506 * 109.47105 * 329.99831 * 17 15 13 21 21 C 1.53001 * 109.47365 * 261.78314 * 11 10 9 22 22 Cl 1.80297 * 109.47300 * 64.64821 * 21 11 10 23 23 H 1.09004 * 109.46792 * 270.25451 * 1 2 3 24 24 H 1.09007 * 109.47036 * 30.24716 * 1 2 3 25 25 H 1.08993 * 109.47289 * 150.24973 * 1 2 3 26 26 H 1.08004 * 119.99203 * 0.02562 * 3 2 1 27 27 H 0.96698 * 114.00201 * 269.97580 * 5 4 3 28 28 H 1.08005 * 120.00117 * 180.02562 * 8 6 4 29 29 H 0.97001 * 120.00051 * 5.25488 * 16 15 13 30 30 H 1.08995 * 109.47189 * 184.65294 * 21 11 10 31 31 H 1.09001 * 109.46912 * 304.65185 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1968 0.0000 4 6 3.5840 1.1973 -0.0062 5 8 4.2637 2.3754 -0.0114 6 6 4.2784 -0.0048 -0.0066 7 17 6.0144 -0.0047 -0.0151 8 6 3.5872 -1.2015 -0.0014 9 6 2.2001 -1.2010 0.0052 10 8 1.5199 -2.3784 0.0109 11 6 2.2943 -3.5746 0.1185 12 1 3.2641 -3.3412 0.5579 13 6 1.5708 -4.5643 0.9947 14 1 0.9447 -5.3232 0.5492 15 6 1.7081 -4.5011 2.3652 16 7 2.5418 -3.6380 2.9034 17 14 0.7102 -5.6414 3.4575 18 1 1.4699 -6.8963 3.6883 19 1 0.4471 -4.9757 4.7586 20 1 -0.5799 -5.9588 2.7941 21 6 2.4968 -4.1779 -1.2729 22 17 3.4808 -3.0510 -2.2792 23 1 -0.3633 0.0046 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8921 -0.5099 26 1 1.6575 2.1320 0.0004 27 1 4.4566 2.7143 -0.8962 28 1 4.1270 -2.1370 -0.0014 29 1 3.0030 -2.9947 2.3426 30 1 3.0157 -5.1322 -1.1831 31 1 1.5272 -4.3346 -1.7456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233591591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -103.791638 kcal Electronic energy + Delta-G solvation = -19165.370621 eV Core-core repulsion = 15883.916860 eV Total energy + Delta-G solvation = -3281.453761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36767 -39.52980 -37.52695 -37.33956 -36.67752 -35.17927 -33.40562 -31.83379 -29.96496 -27.60165 -26.74697 -24.74726 -22.68399 -22.47914 -19.49661 -19.18886 -18.86383 -17.43709 -16.65205 -16.29414 -16.03255 -15.79035 -15.61624 -14.87998 -14.66076 -14.38591 -14.13193 -13.89849 -13.82302 -13.59398 -13.24899 -12.92946 -12.73145 -12.51463 -12.34509 -12.00350 -11.94499 -11.87787 -11.57225 -11.40060 -11.11512 -10.86260 -10.59252 -9.71892 -8.84290 -8.80346 -6.68689 0.07371 0.29440 1.06973 1.30442 1.53593 1.61266 1.79599 2.37452 2.51554 2.58455 3.17974 3.25893 3.76539 3.93109 4.00425 4.06468 4.15643 4.40239 4.57335 4.61867 4.68136 4.79107 4.82869 5.00298 5.11137 5.18614 5.45151 5.60011 5.68211 5.95543 6.30986 6.70188 6.81191 7.19355 8.52831 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.006396 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.029363 B = 4376.445240 C = 4653.871798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.125 4.125 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.489 6.489 6 C -0.040 4.040 7 Cl -0.064 7.064 8 C -0.185 4.185 9 C 0.133 3.867 10 O -0.319 6.319 11 C 0.173 3.827 12 H 0.034 0.966 13 C -0.611 4.611 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.908 5.908 17 Si 1.120 2.880 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.024 4.024 22 Cl -0.205 7.205 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.171 0.829 27 H 0.403 0.597 28 H 0.126 0.874 29 H 0.261 0.739 30 H 0.109 0.891 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 6.930 -7.853 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C 0.020 3.980 5 O -0.300 6.300 6 C -0.068 4.068 7 Cl -0.035 7.035 8 C -0.205 4.205 9 C 0.085 3.915 10 O -0.234 6.234 11 C 0.120 3.880 12 H 0.052 0.948 13 C -0.648 4.648 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.543 5.543 17 Si 0.940 3.060 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.086 4.086 22 Cl -0.179 7.179 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.189 0.811 27 H 0.261 0.739 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.862 6.457 -5.817 8.734 hybrid contribution 1.125 0.328 -2.094 2.400 sum 0.263 6.786 -7.911 10.426 Atomic orbital electron populations 1.20564 0.88698 1.03414 1.02459 1.19624 0.98141 0.89822 1.04995 1.21233 0.91958 0.98353 0.99573 1.17930 0.89955 0.84016 1.06127 1.84849 1.76011 1.34315 1.34843 1.21192 0.84833 0.94388 1.06350 1.98322 1.09381 1.98926 1.96898 1.21072 0.93880 0.97770 1.07779 1.19208 0.89976 0.88129 0.94144 1.86517 1.38322 1.12583 1.85929 1.20635 0.93521 0.81906 0.91983 0.94805 1.22220 1.34426 1.14543 0.93567 0.91196 1.27505 0.95552 0.99617 0.98556 1.70896 1.24353 1.18771 1.40233 0.82901 0.75215 0.73946 0.73890 1.19179 1.21175 1.18947 1.25050 0.97487 0.94167 0.91914 1.98677 1.75726 1.69018 1.74438 0.91656 0.88585 0.92303 0.81119 0.73909 0.85589 0.92814 0.87222 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.79 71.23 0.70 -2.13 16 2 C -0.12 -4.39 5.89 -19.77 -0.12 -4.51 16 3 C -0.09 -2.77 9.64 22.35 0.22 -2.56 16 4 C 0.07 2.08 6.70 22.50 0.15 2.23 16 5 O -0.49 -12.78 12.96 -93.63 -1.21 -13.99 16 6 C -0.04 -1.47 6.33 22.40 0.14 -1.33 16 7 Cl -0.06 -2.14 28.50 -2.72 -0.08 -2.21 16 8 C -0.19 -7.64 6.99 22.37 0.16 -7.48 16 9 C 0.13 5.57 6.16 22.49 0.14 5.71 16 10 O -0.32 -14.86 8.72 -93.28 -0.81 -15.67 16 11 C 0.17 8.11 1.87 29.85 0.06 8.17 16 12 H 0.03 1.75 4.00 -2.38 -0.01 1.74 16 13 C -0.61 -31.19 8.69 25.60 0.22 -30.97 16 14 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 15 C -0.01 -0.49 5.45 84.65 0.46 -0.03 16 16 N -0.91 -52.34 13.63 21.45 0.29 -52.05 16 17 Si 1.12 46.18 29.91 68.60 2.05 48.23 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.02 -0.90 6.31 71.98 0.45 -0.45 16 22 Cl -0.20 -7.40 25.72 -2.72 -0.07 -7.47 16 23 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 25 H 0.06 1.92 7.52 -2.39 -0.02 1.90 16 26 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.40 6.54 9.06 -74.06 -0.67 5.86 16 28 H 0.13 5.59 4.87 -2.91 -0.01 5.57 16 29 H 0.26 15.40 6.66 -92.71 -0.62 14.78 16 30 H 0.11 3.91 8.14 -2.39 -0.02 3.90 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -61.59 295.07 3.41 -58.18 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.67 Total: 18.34 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.58 Total: -33.34 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.29 Total: -52.05 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -2.03 Total: -29.66 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.23 kcal Atomic # 17 Polarization: -9.54 SS G_CDS: -0.15 Total: -9.69 kcal Total: -61.59 3.41 -58.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233591591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.616 kcal (2) G-P(sol) polarization free energy of solvation -61.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds