Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53002 * 109.47420 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47062 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47022 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.46901 * 110.99909 * 66.04898 * 8 7 6 10 10 C 1.46898 * 110.99884 * 190.00230 * 8 7 6 11 11 C 1.50703 * 109.47367 * 164.08061 * 10 8 7 12 12 C 1.37638 * 120.12512 * 265.67830 * 11 10 8 13 13 C 1.38616 * 120.24548 * 180.32081 * 12 11 10 14 14 C 1.38654 * 120.49917 * 359.66043 * 13 12 11 15 15 C 1.37592 * 120.25292 * 0.02562 * 14 13 12 16 16 C 1.40695 * 120.12849 * 85.36212 * 11 10 8 17 17 C 1.41395 * 120.24470 * 359.97438 * 16 11 10 18 18 H 1.07996 * 119.99787 * 235.09103 * 17 16 11 19 19 C 1.39939 * 120.00219 * 55.09168 * 17 16 11 20 20 N 1.30828 * 120.00079 * 18.92072 * 19 17 16 21 21 Si 1.86806 * 120.00265 * 198.91794 * 19 17 16 22 22 H 1.48496 * 109.47239 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46848 * 300.00004 * 21 19 17 24 24 H 1.48496 * 109.46946 * 59.99678 * 21 19 17 25 25 H 1.09001 * 109.47102 * 60.00529 * 1 2 3 26 26 H 1.09009 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47139 * 299.99578 * 1 2 3 28 28 H 1.09008 * 109.47329 * 239.99945 * 2 1 3 29 29 H 1.09000 * 109.47050 * 120.00254 * 2 1 3 30 30 H 1.08996 * 109.47302 * 60.00112 * 3 2 1 31 31 H 1.09000 * 109.47396 * 300.00042 * 3 2 1 32 32 H 1.08996 * 109.46852 * 59.99762 * 4 3 2 33 33 H 1.09000 * 109.46810 * 300.00326 * 4 3 2 34 34 H 1.08996 * 109.47302 * 60.00038 * 5 4 3 35 35 H 1.09000 * 109.47396 * 299.99968 * 5 4 3 36 36 H 1.08994 * 109.47139 * 60.00422 * 6 5 4 37 37 H 1.08994 * 109.47274 * 299.99844 * 6 5 4 38 38 H 1.09005 * 109.47185 * 60.00360 * 7 6 5 39 39 H 1.08994 * 109.47029 * 300.00068 * 7 6 5 40 40 H 1.09002 * 109.47132 * 190.38489 * 9 8 7 41 41 H 1.09000 * 109.46653 * 310.38564 * 9 8 7 42 42 H 1.08995 * 109.47108 * 70.38692 * 9 8 7 43 43 H 1.08995 * 109.47612 * 44.07326 * 10 8 7 44 44 H 1.09005 * 109.47012 * 284.07532 * 10 8 7 45 45 H 1.07998 * 119.87708 * 0.02562 * 12 11 10 46 46 H 1.08001 * 119.74680 * 179.69028 * 13 12 11 47 47 H 1.08001 * 119.87232 * 180.02562 * 14 13 12 48 48 H 1.08001 * 120.12898 * 180.02562 * 15 14 13 49 49 H 0.96999 * 119.99762 * 357.33098 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0013 7 6 6.1199 4.3276 -0.0026 8 7 7.5889 4.3276 -0.0020 9 6 8.1159 3.7695 -1.2545 10 6 8.1152 5.6784 0.2351 11 6 9.5707 5.5908 0.6160 12 6 9.9368 5.5579 1.9423 13 6 11.2752 5.4840 2.2956 14 6 12.2589 5.4355 1.3197 15 6 11.9157 5.4608 -0.0125 16 6 10.5600 5.5358 -0.3829 17 6 10.1953 5.5617 -1.7487 18 1 10.5271 4.7759 -2.4112 19 6 9.4044 6.6054 -2.2422 20 7 9.3071 7.7252 -1.5727 21 14 8.4876 6.3999 -3.8567 22 1 7.7283 7.6404 -4.1562 23 1 9.4601 6.1396 -4.9484 24 1 7.5464 5.2564 -3.7493 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.7170 3.3991 0.8887 35 1 3.7163 3.3986 -0.8913 36 1 5.9733 2.3709 -0.8910 37 1 5.9733 2.3716 0.8889 38 1 5.7566 4.8422 0.8870 39 1 5.7566 4.8405 -0.8930 40 1 9.1898 3.6097 -1.1576 41 1 7.6245 2.8194 -1.4639 42 1 7.9244 4.4654 -2.0712 43 1 7.5559 6.1497 1.0431 44 1 8.0125 6.2728 -0.6728 45 1 9.1788 5.5944 2.7108 46 1 11.5537 5.4637 3.3389 47 1 13.2986 5.3777 1.6063 48 1 12.6836 5.4225 -0.7710 49 1 9.7518 7.8181 -0.7157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235520187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = -22.460112 kcal Electronic energy + Delta-G solvation = -23182.234525 eV Core-core repulsion = 20107.082289 eV Total energy + Delta-G solvation = -3075.152237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29263 -38.38287 -37.11359 -35.62425 -34.36541 -32.17810 -31.45722 -30.31845 -28.44136 -27.03292 -26.22304 -24.47234 -22.77476 -22.45174 -21.87757 -21.43882 -21.23059 -19.47973 -17.05066 -16.90797 -16.48223 -16.44948 -15.89230 -15.85615 -15.72126 -15.03650 -14.95652 -14.65689 -14.48172 -14.11150 -14.00461 -13.86712 -13.50538 -13.10984 -13.02121 -12.82704 -12.72372 -12.49237 -12.42061 -12.30432 -12.19842 -11.98270 -11.96925 -11.80875 -11.71510 -11.54611 -11.38874 -11.27305 -11.14851 -11.08238 -10.46765 -9.44125 -9.22326 -8.95806 -8.79040 -6.33160 0.87884 0.93017 1.44411 1.51204 1.67847 2.35564 2.83480 3.16723 3.56543 3.84000 3.98785 4.13616 4.15559 4.20490 4.29906 4.34834 4.43260 4.46373 4.49552 4.58864 4.60832 4.71526 4.73898 4.75989 4.86532 4.90105 4.95089 4.99116 5.02911 5.03855 5.08374 5.14061 5.17011 5.23535 5.26828 5.31114 5.34257 5.41197 5.48133 5.53111 5.56730 5.62453 5.85595 5.91315 5.97849 6.01875 6.24926 6.33951 6.46475 6.50384 6.90625 7.14474 8.38496 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.003550 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.057555 B = 7885.054008 C = 9022.020954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.105 4.105 7 C 0.052 3.948 8 N -0.537 5.537 9 C 0.036 3.964 10 C 0.102 3.898 11 C -0.142 4.142 12 C -0.101 4.101 13 C -0.205 4.205 14 C -0.110 4.110 15 C -0.213 4.213 16 C 0.083 3.917 17 C -0.570 4.570 18 H 0.060 0.940 19 C 0.014 3.986 20 N -0.862 5.862 21 Si 1.082 2.918 22 H -0.280 1.280 23 H -0.265 1.265 24 H -0.254 1.254 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.094 0.906 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -10.589 2.661 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.143 4.143 7 C -0.076 4.076 8 N -0.261 5.261 9 C -0.112 4.112 10 C -0.025 4.025 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.223 4.223 14 C -0.128 4.128 15 C -0.233 4.233 16 C 0.081 3.919 17 C -0.602 4.602 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.490 5.490 21 Si 0.903 3.097 22 H -0.206 1.206 23 H -0.190 1.190 24 H -0.179 1.179 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.131 0.869 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.113 0.887 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.951 -10.062 1.968 17.313 hybrid contribution 1.289 0.063 0.431 1.361 sum -12.662 -9.998 2.400 16.311 Atomic orbital electron populations 1.21783 0.95473 1.01903 1.01871 1.21544 0.96229 0.96600 1.01990 1.21606 0.94846 0.97081 1.02018 1.21551 0.95704 0.95971 1.02012 1.21515 0.93859 0.97569 1.02063 1.21524 0.95729 0.94858 1.02142 1.22214 0.87254 0.98251 0.99860 1.62073 1.07082 1.21655 1.35296 1.22614 1.00645 0.98136 0.89791 1.20987 0.91777 0.89627 1.00148 1.20179 0.94685 1.06402 0.93103 1.20926 0.96232 0.99647 0.95185 1.20997 0.92669 1.09715 0.98946 1.21052 0.99116 0.99782 0.92840 1.21662 0.96250 1.09664 0.95696 1.17852 0.90881 0.89158 0.94042 1.20000 1.33869 1.11798 0.94559 0.92174 1.27389 0.94627 0.91005 1.06431 1.70613 1.39799 1.24325 1.14278 0.83540 0.76921 0.77179 0.72072 1.20567 1.18993 1.17892 0.92764 0.92302 0.92653 0.92166 0.92025 0.91950 0.92184 0.92260 0.91959 0.91673 0.92284 0.92382 0.91694 0.91146 0.96339 0.92330 0.91834 0.95828 0.93042 0.92834 0.86923 0.85476 0.85854 0.88748 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.12 -1.87 5.21 30.59 0.16 -1.71 16 4 C -0.11 -2.09 5.21 30.59 0.16 -1.93 16 5 C -0.11 -2.38 5.21 30.59 0.16 -2.22 16 6 C -0.10 -2.80 5.16 30.60 0.16 -2.64 16 7 C 0.05 1.72 4.95 86.30 0.43 2.15 16 8 N -0.54 -21.70 4.71 -927.05 -4.36 -26.07 16 9 C 0.04 1.48 7.89 127.69 1.01 2.49 16 10 C 0.10 4.63 4.79 85.56 0.41 5.04 16 11 C -0.14 -6.85 4.44 -19.40 -0.09 -6.94 16 12 C -0.10 -4.42 9.66 22.22 0.21 -4.20 16 13 C -0.20 -8.31 10.05 22.46 0.23 -8.09 16 14 C -0.11 -4.62 10.02 22.22 0.22 -4.40 16 15 C -0.21 -10.35 9.80 22.73 0.22 -10.13 16 16 C 0.08 4.26 3.87 -21.29 -0.08 4.18 16 17 C -0.57 -29.78 5.30 23.46 0.12 -29.65 16 18 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 19 C 0.01 0.74 3.06 85.25 0.26 1.00 16 20 N -0.86 -47.50 12.24 21.83 0.27 -47.23 16 21 Si 1.08 45.16 28.27 68.60 1.94 47.10 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.25 -9.76 6.10 99.48 0.61 -9.15 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.59 6.36 -2.39 -0.02 1.58 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.21 7.86 -2.38 -0.02 2.19 16 39 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 40 H 0.06 2.72 5.60 -2.39 -0.01 2.71 16 41 H 0.06 2.25 6.07 -2.39 -0.01 2.23 16 42 H 0.02 1.02 3.80 -2.39 -0.01 1.01 16 43 H 0.05 2.22 7.72 -2.39 -0.02 2.20 16 44 H 0.05 2.70 4.06 -2.38 -0.01 2.69 16 45 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 47 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 48 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 49 H 0.27 15.65 7.09 -92.71 -0.66 14.99 16 Total: -1.00 -56.48 370.43 3.22 -53.26 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.90 Total: 32.83 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 4.48 Total: -59.89 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -4.10 Total: -73.30 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.94 Total: 47.10 kcal Total: -56.48 3.22 -53.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235520187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.800 kcal (2) G-P(sol) polarization free energy of solvation -56.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds