Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 C 1.53002 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.46688 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00256 * 70.09178 * 5 4 3 7 7 C 1.50697 * 109.47194 * 196.23375 * 6 5 4 8 8 H 1.08000 * 119.99910 * 355.14044 * 7 6 5 9 9 C 1.37884 * 120.00072 * 175.13157 * 7 6 5 10 10 N 1.31511 * 119.99636 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 119.99958 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47020 * 60.00642 * 11 9 7 13 13 H 1.48506 * 109.47166 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47800 * 300.00604 * 11 9 7 15 15 C 1.46905 * 110.99324 * 194.04477 * 5 4 3 16 16 C 1.50693 * 109.47595 * 65.01192 * 15 5 4 17 17 C 1.38259 * 119.99682 * 260.35094 * 16 15 5 18 18 C 1.50697 * 119.99991 * 359.97438 * 17 16 15 19 19 C 1.38219 * 120.00023 * 179.80821 * 17 16 15 20 20 C 1.38259 * 119.99872 * 0.39149 * 19 17 16 21 21 C 1.38214 * 119.99746 * 359.86104 * 20 19 17 22 22 C 1.38214 * 120.00411 * 80.61583 * 16 15 5 23 23 C 1.50701 * 119.99687 * 359.97438 * 22 16 15 24 24 C 1.52998 * 109.46926 * 85.77872 * 23 22 16 25 25 H 1.09005 * 109.46595 * 299.99557 * 1 2 3 26 26 H 1.08996 * 109.47159 * 59.99699 * 1 2 3 27 27 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47029 * 239.99807 * 2 1 3 29 29 H 1.09002 * 109.47008 * 120.00702 * 2 1 3 30 30 H 1.09005 * 109.46935 * 60.00652 * 3 2 1 31 31 H 1.08996 * 109.47261 * 300.00238 * 3 2 1 32 32 H 1.08994 * 109.47130 * 60.00377 * 4 3 2 33 33 H 1.09000 * 109.47076 * 299.99885 * 4 3 2 34 34 H 1.09004 * 109.47105 * 316.23948 * 6 5 4 35 35 H 1.09000 * 109.47209 * 76.23158 * 6 5 4 36 36 H 0.97002 * 119.99909 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46653 * 185.00804 * 15 5 4 38 38 H 1.09002 * 109.47319 * 305.00308 * 15 5 4 39 39 H 1.09001 * 109.47471 * 93.13407 * 18 17 16 40 40 H 1.09008 * 109.46890 * 213.13104 * 18 17 16 41 41 H 1.09001 * 109.47570 * 333.12520 * 18 17 16 42 42 H 1.07995 * 120.00174 * 180.22684 * 19 17 16 43 43 H 1.07999 * 119.99756 * 179.83464 * 20 19 17 44 44 H 1.08002 * 119.99718 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47124 * 205.77584 * 23 22 16 46 46 H 1.08995 * 109.47269 * 325.77518 * 23 22 16 47 47 H 1.08995 * 109.47436 * 59.99748 * 24 23 22 48 48 H 1.09001 * 109.47467 * 179.97438 * 24 23 22 49 49 H 1.09005 * 109.47288 * 299.99891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7944 3.4791 1.2908 7 6 3.9333 4.9717 1.1373 8 1 4.2688 5.3892 0.1994 9 6 3.6318 5.8045 2.1941 10 7 3.2236 5.2960 3.3361 11 14 3.8046 7.6547 2.0040 12 1 2.9156 8.1252 0.9116 13 1 3.4228 8.3207 3.2752 14 1 5.2134 7.9891 1.6743 15 6 5.4898 2.8802 -0.3310 16 6 5.6946 2.4050 -1.7463 17 6 6.1178 1.1109 -1.9865 18 6 6.3746 0.1758 -0.8330 19 6 6.3019 0.6737 -3.2847 20 6 6.0707 1.5331 -4.3428 21 6 5.6528 2.8284 -4.1024 22 6 5.4649 3.2645 -2.8040 23 6 5.0089 4.6768 -2.5419 24 6 6.2273 5.5685 -2.2949 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9286 0.8909 34 1 2.7823 3.2399 1.6173 35 1 4.5092 3.1220 2.0322 36 1 3.0118 5.8818 4.0797 37 1 5.8469 3.9057 -0.2368 38 1 6.0455 2.2378 0.3521 39 1 5.4742 -0.4030 -0.6269 40 1 7.1906 -0.5004 -1.0882 41 1 6.6449 0.7541 0.0505 42 1 6.6289 -0.3382 -3.4725 43 1 6.2172 1.1923 -5.3571 44 1 5.4726 3.4999 -4.9290 45 1 4.4571 5.0467 -3.4060 46 1 4.3628 4.6930 -1.6642 47 1 6.8734 5.5523 -3.1726 48 1 5.8976 6.5901 -2.1058 49 1 6.7792 5.1986 -1.4307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237327508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -2.588674 kcal Electronic energy + Delta-G solvation = -24347.241001 eV Core-core repulsion = 21272.950454 eV Total energy + Delta-G solvation = -3074.290546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.75254 -36.90865 -34.43725 -34.06259 -32.77961 -31.84100 -29.60036 -28.65897 -27.09554 -26.44319 -24.75563 -23.27463 -22.80167 -21.20869 -20.37699 -19.97043 -19.38653 -16.62611 -15.92494 -15.62146 -15.14532 -14.71416 -14.61415 -14.37820 -13.70512 -13.61323 -13.33869 -13.18347 -13.02085 -12.75937 -12.49956 -12.42806 -12.23971 -12.12285 -11.88013 -11.61540 -11.41178 -11.21484 -11.14686 -10.93562 -10.77850 -10.75587 -10.59267 -10.47598 -10.40194 -10.25405 -10.09822 -10.01638 -9.50370 -9.18163 -8.40357 -8.24613 -8.19287 -7.16244 -6.00473 -4.01133 1.68139 1.72571 3.33643 3.38199 3.40571 4.03075 4.44149 4.94445 5.09335 5.09683 5.19833 5.30483 5.31058 5.36362 5.48099 5.48427 5.51771 5.61649 5.70356 5.77552 5.82570 5.86500 5.90126 5.93187 6.05726 6.08053 6.08749 6.18486 6.19274 6.27148 6.31542 6.37979 6.38776 6.43668 6.47240 6.50449 6.73169 6.77577 6.79003 6.83407 6.89950 6.94614 7.16899 7.32521 7.37453 7.41097 7.86317 8.15190 8.25626 8.58225 9.06275 9.62681 11.10192 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.006628 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.324844 B = 4223.542538 C = 5948.103670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.054 3.946 5 N -0.525 5.525 6 C 0.191 3.809 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.091 3.909 16 C -0.063 4.063 17 C -0.083 4.083 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.048 4.048 23 C -0.099 4.099 24 C -0.141 4.141 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.018 0.982 34 H 0.039 0.961 35 H -0.014 1.014 36 H 0.261 0.739 37 H 0.093 0.907 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.111 0.889 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -8.971 -11.187 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.074 4.074 5 N -0.249 5.249 6 C 0.066 3.934 7 C -0.542 4.542 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.036 4.036 16 C -0.064 4.064 17 C -0.084 4.084 18 C -0.177 4.177 19 C -0.151 4.151 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.048 4.048 23 C -0.136 4.136 24 C -0.199 4.199 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.078 0.922 46 H 0.129 0.871 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.051 -8.643 -11.333 14.575 hybrid contribution 0.488 0.512 0.538 0.888 sum 3.539 -8.131 -10.795 13.970 Atomic orbital electron populations 1.21749 0.96251 1.00769 1.01918 1.21490 0.95543 0.97765 1.01148 1.21590 0.95429 0.95181 1.02994 1.22140 0.95182 0.91027 0.99088 1.62143 1.13199 1.13916 1.35670 1.19800 0.96576 0.93940 0.83115 1.21162 1.44109 0.90805 0.98163 0.91695 1.24954 0.95510 0.98689 0.95297 1.69943 1.45942 1.35163 1.02810 0.86656 0.78548 0.85555 0.77257 1.20163 1.21471 1.20276 1.21100 0.90625 1.01776 0.90099 1.19768 0.97999 0.92564 0.96044 1.19752 0.99657 0.94394 0.94562 1.20965 1.01535 0.98268 0.96891 1.20840 1.02841 0.99239 0.92227 1.20952 1.00898 0.94130 0.98298 1.20978 1.01703 0.95980 0.96250 1.19775 0.96749 0.96160 0.92123 1.20753 0.98515 0.90262 1.04096 1.21692 0.97741 0.99362 1.01072 0.92680 0.92901 0.93429 0.92709 0.92581 0.91333 0.91747 0.91833 0.96364 0.94345 0.99664 0.92969 0.88920 0.95058 0.91242 0.92175 0.90980 0.86927 0.86915 0.86789 0.92216 0.87125 0.93716 0.92566 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.11 -1.97 5.25 -26.73 -0.14 -2.11 16 4 C 0.05 0.98 4.06 -3.82 -0.02 0.96 16 5 N -0.53 -10.86 3.79 -237.51 -0.90 -11.76 16 6 C 0.19 4.77 4.59 -4.98 -0.02 4.74 16 7 C -0.50 -13.51 8.55 -34.44 -0.29 -13.81 16 8 H 0.06 1.69 5.89 -52.49 -0.31 1.38 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 11 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.09 1.74 3.85 -4.98 -0.02 1.72 16 16 C -0.06 -1.06 4.60 -104.63 -0.48 -1.55 16 17 C -0.08 -1.24 4.92 -104.62 -0.52 -1.76 16 18 C -0.12 -1.58 8.74 36.00 0.31 -1.27 16 19 C -0.13 -1.80 9.72 -39.58 -0.38 -2.18 16 20 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 21 C -0.13 -1.87 9.68 -39.58 -0.38 -2.26 16 22 C -0.05 -0.77 5.13 -104.62 -0.54 -1.31 16 23 C -0.10 -1.64 5.40 -27.88 -0.15 -1.79 16 24 C -0.14 -2.17 9.75 37.16 0.36 -1.81 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.34 6.45 -51.93 -0.33 1.00 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.09 4.87 -51.93 -0.25 0.83 16 33 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.04 1.04 6.17 -51.93 -0.32 0.72 16 35 H -0.01 -0.39 8.05 -51.93 -0.42 -0.81 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.91 4.80 -51.93 -0.25 1.66 16 38 H 0.03 0.59 5.56 -51.93 -0.29 0.30 16 39 H 0.07 0.89 7.10 -51.93 -0.37 0.52 16 40 H 0.06 0.67 8.11 -51.92 -0.42 0.24 16 41 H 0.07 1.02 5.74 -51.93 -0.30 0.72 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 46 H 0.11 2.18 5.05 -51.93 -0.26 1.92 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.94 6.81 -51.93 -0.35 0.59 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -28.20 371.87 -10.63 -38.84 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.50 Total: 2.90 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.55 Total: -26.34 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.16 Total: -37.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.20 -10.63 -38.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237327508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.247 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds