Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 C 1.53002 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.46688 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00256 * 70.09178 * 5 4 3 7 7 C 1.50697 * 109.47194 * 196.23375 * 6 5 4 8 8 H 1.08000 * 119.99910 * 355.14044 * 7 6 5 9 9 C 1.37884 * 120.00072 * 175.13157 * 7 6 5 10 10 N 1.31511 * 119.99636 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 119.99958 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47020 * 60.00642 * 11 9 7 13 13 H 1.48506 * 109.47166 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47800 * 300.00604 * 11 9 7 15 15 C 1.46905 * 110.99324 * 194.04477 * 5 4 3 16 16 C 1.50693 * 109.47595 * 65.01192 * 15 5 4 17 17 C 1.38259 * 119.99682 * 260.35094 * 16 15 5 18 18 C 1.50697 * 119.99991 * 359.97438 * 17 16 15 19 19 C 1.38219 * 120.00023 * 179.80821 * 17 16 15 20 20 C 1.38259 * 119.99872 * 0.39149 * 19 17 16 21 21 C 1.38214 * 119.99746 * 359.86104 * 20 19 17 22 22 C 1.38214 * 120.00411 * 80.61583 * 16 15 5 23 23 C 1.50701 * 119.99687 * 359.97438 * 22 16 15 24 24 C 1.52998 * 109.46926 * 85.77872 * 23 22 16 25 25 H 1.09005 * 109.46595 * 299.99557 * 1 2 3 26 26 H 1.08996 * 109.47159 * 59.99699 * 1 2 3 27 27 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47029 * 239.99807 * 2 1 3 29 29 H 1.09002 * 109.47008 * 120.00702 * 2 1 3 30 30 H 1.09005 * 109.46935 * 60.00652 * 3 2 1 31 31 H 1.08996 * 109.47261 * 300.00238 * 3 2 1 32 32 H 1.08994 * 109.47130 * 60.00377 * 4 3 2 33 33 H 1.09000 * 109.47076 * 299.99885 * 4 3 2 34 34 H 1.09004 * 109.47105 * 316.23948 * 6 5 4 35 35 H 1.09000 * 109.47209 * 76.23158 * 6 5 4 36 36 H 0.97002 * 119.99909 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46653 * 185.00804 * 15 5 4 38 38 H 1.09002 * 109.47319 * 305.00308 * 15 5 4 39 39 H 1.09001 * 109.47471 * 93.13407 * 18 17 16 40 40 H 1.09008 * 109.46890 * 213.13104 * 18 17 16 41 41 H 1.09001 * 109.47570 * 333.12520 * 18 17 16 42 42 H 1.07995 * 120.00174 * 180.22684 * 19 17 16 43 43 H 1.07999 * 119.99756 * 179.83464 * 20 19 17 44 44 H 1.08002 * 119.99718 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47124 * 205.77584 * 23 22 16 46 46 H 1.08995 * 109.47269 * 325.77518 * 23 22 16 47 47 H 1.08995 * 109.47436 * 59.99748 * 24 23 22 48 48 H 1.09001 * 109.47467 * 179.97438 * 24 23 22 49 49 H 1.09005 * 109.47288 * 299.99891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.7944 3.4791 1.2908 7 6 3.9333 4.9717 1.1373 8 1 4.2688 5.3892 0.1994 9 6 3.6318 5.8045 2.1941 10 7 3.2236 5.2960 3.3361 11 14 3.8046 7.6547 2.0040 12 1 2.9156 8.1252 0.9116 13 1 3.4228 8.3207 3.2752 14 1 5.2134 7.9891 1.6743 15 6 5.4898 2.8802 -0.3310 16 6 5.6946 2.4050 -1.7463 17 6 6.1178 1.1109 -1.9865 18 6 6.3746 0.1758 -0.8330 19 6 6.3019 0.6737 -3.2847 20 6 6.0707 1.5331 -4.3428 21 6 5.6528 2.8284 -4.1024 22 6 5.4649 3.2645 -2.8040 23 6 5.0089 4.6768 -2.5419 24 6 6.2273 5.5685 -2.2949 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9286 0.8909 34 1 2.7823 3.2399 1.6173 35 1 4.5092 3.1220 2.0322 36 1 3.0118 5.8818 4.0797 37 1 5.8469 3.9057 -0.2368 38 1 6.0455 2.2378 0.3521 39 1 5.4742 -0.4030 -0.6269 40 1 7.1906 -0.5004 -1.0882 41 1 6.6449 0.7541 0.0505 42 1 6.6289 -0.3382 -3.4725 43 1 6.2172 1.1923 -5.3571 44 1 5.4726 3.4999 -4.9290 45 1 4.4571 5.0467 -3.4060 46 1 4.3628 4.6930 -1.6642 47 1 6.8734 5.5523 -3.1726 48 1 5.8976 6.5901 -2.1058 49 1 6.7792 5.1986 -1.4307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237327508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -15.357465 kcal Electronic energy + Delta-G solvation = -24347.794697 eV Core-core repulsion = 21272.950454 eV Total energy + Delta-G solvation = -3074.844243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98424 -38.43599 -35.76271 -35.28130 -34.68424 -33.20675 -30.85309 -30.19828 -28.64671 -27.72296 -26.22687 -24.56453 -24.50646 -22.56676 -21.68740 -21.17332 -20.85088 -18.63380 -17.14643 -16.98179 -16.77212 -16.28787 -15.92857 -15.80630 -15.27398 -14.96099 -14.58188 -14.42413 -14.30356 -14.07434 -13.89765 -13.78594 -13.56861 -13.41580 -13.21852 -13.19766 -12.76645 -12.71295 -12.65127 -12.48439 -12.31961 -12.19380 -12.08284 -11.83820 -11.75174 -11.66294 -11.45588 -11.38812 -11.18302 -11.12770 -10.54260 -9.42068 -9.34014 -8.89305 -8.15647 -6.23625 0.55249 0.59413 1.40563 1.43026 1.50278 2.41774 2.87380 3.16665 3.45358 3.90083 3.97000 4.04785 4.09459 4.16936 4.18737 4.30807 4.34023 4.43265 4.46175 4.54282 4.63068 4.64519 4.70544 4.75760 4.79089 4.85394 4.90937 4.91728 4.96252 4.99613 5.02593 5.11164 5.15256 5.22377 5.25709 5.28272 5.29875 5.31179 5.43326 5.46536 5.51024 5.52787 5.69681 5.77756 5.78315 5.99885 6.14101 6.26213 6.44161 6.70011 6.92697 7.44972 8.95088 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.006628 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.324844 B = 4223.542538 C = 5948.103670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.109 4.109 4 C 0.059 3.941 5 N -0.526 5.526 6 C 0.208 3.792 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.100 3.900 16 C -0.086 4.086 17 C -0.091 4.091 18 C -0.118 4.118 19 C -0.131 4.131 20 C -0.116 4.116 21 C -0.135 4.135 22 C -0.064 4.064 23 C -0.096 4.096 24 C -0.136 4.136 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.012 0.988 34 H 0.013 0.987 35 H -0.047 1.047 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.134 0.866 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -10.095 -14.198 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.069 4.069 5 N -0.250 5.250 6 C 0.082 3.918 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.577 5.577 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.028 4.028 16 C -0.087 4.087 17 C -0.091 4.091 18 C -0.175 4.175 19 C -0.149 4.149 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.064 4.064 23 C -0.133 4.133 24 C -0.194 4.194 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.031 0.969 35 H -0.030 1.030 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.152 0.848 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.703 -9.777 -14.363 17.765 hybrid contribution 0.323 0.787 1.413 1.649 sum 4.027 -8.989 -12.950 16.271 Atomic orbital electron populations 1.21737 0.95051 1.02195 1.01527 1.21440 0.96575 0.95119 1.02087 1.21537 0.94758 0.97406 1.00968 1.22178 0.95718 0.89521 0.99460 1.62087 1.14845 1.15453 1.32600 1.19416 0.94064 0.93833 0.84445 1.21486 1.43447 0.91802 0.98273 0.91355 1.25815 0.95192 1.03504 0.94916 1.70081 1.47154 1.36822 1.03640 0.85610 0.78994 0.79790 0.77351 1.19306 1.21181 1.19242 1.20941 0.89134 1.00420 0.92259 1.19587 1.00620 0.94080 0.94368 1.19953 0.99404 0.93693 0.96063 1.20959 1.02616 0.98176 0.95713 1.21192 1.01732 1.00680 0.91309 1.21368 0.98866 0.93300 0.99909 1.21222 1.01278 0.97094 0.95646 1.19830 0.97743 0.95747 0.93127 1.20643 0.98392 0.91412 1.02885 1.21646 0.97537 0.98921 1.01264 0.93775 0.92670 0.91048 0.90973 0.92317 0.94524 0.92501 0.90036 0.97020 0.96920 1.02973 0.92964 0.91354 0.95536 0.90907 0.89588 0.92826 0.83979 0.83555 0.84777 0.90767 0.90970 0.91513 0.92631 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.11 -3.10 5.93 30.59 0.18 -2.92 16 3 C -0.11 -3.87 5.25 30.59 0.16 -3.71 16 4 C 0.06 2.21 4.06 86.30 0.35 2.56 16 5 N -0.53 -22.96 3.79 -905.36 -3.43 -26.39 16 6 C 0.21 11.18 4.59 85.56 0.39 11.57 16 7 C -0.51 -28.80 8.55 25.60 0.22 -28.58 16 8 H 0.07 3.73 5.89 -2.91 -0.02 3.72 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.94 -56.85 13.29 21.45 0.28 -56.56 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 C 0.10 3.98 3.85 85.55 0.33 4.31 16 16 C -0.09 -2.88 4.60 -19.87 -0.09 -2.97 16 17 C -0.09 -2.54 4.92 -19.87 -0.10 -2.64 16 18 C -0.12 -2.94 8.74 71.23 0.62 -2.32 16 19 C -0.13 -3.02 9.72 22.27 0.22 -2.81 16 20 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 21 C -0.13 -3.44 9.68 22.27 0.22 -3.22 16 22 C -0.06 -2.02 5.13 -19.87 -0.10 -2.12 16 23 C -0.10 -3.18 5.40 29.85 0.16 -3.02 16 24 C -0.14 -4.17 9.75 71.98 0.70 -3.47 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.52 6.45 -2.38 -0.02 1.51 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.76 4.87 -2.39 -0.01 2.75 16 33 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.01 0.74 6.17 -2.38 -0.01 0.73 16 35 H -0.05 -2.78 8.05 -2.39 -0.02 -2.80 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.07 3.02 4.80 -2.39 -0.01 3.00 16 38 H 0.03 1.07 5.56 -2.39 -0.01 1.06 16 39 H 0.07 1.75 7.10 -2.39 -0.02 1.73 16 40 H 0.09 1.67 8.11 -2.38 -0.02 1.65 16 41 H 0.05 1.52 5.74 -2.39 -0.01 1.51 16 42 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16 46 H 0.07 2.95 5.05 -2.39 -0.01 2.94 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.04 1.34 6.81 -2.38 -0.02 1.33 16 Total: -1.00 -63.84 371.87 4.44 -59.40 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.90 Total: 20.78 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 4.66 Total: -43.87 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.15 Total: -82.95 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.84 4.44 -59.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237327508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.041 kcal (2) G-P(sol) polarization free energy of solvation -63.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds