Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.52991 * 109.47063 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47157 * 179.70887 * 4 3 2 6 6 C 1.46901 * 111.00004 * 288.19055 * 5 4 3 7 7 C 1.50700 * 109.47102 * 160.35434 * 6 5 4 8 8 H 1.08004 * 120.00233 * 4.63950 * 7 6 5 9 9 C 1.37878 * 120.00173 * 184.64671 * 7 6 5 10 10 N 1.31518 * 119.99537 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00277 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47076 * 59.99950 * 11 9 7 13 13 H 1.48497 * 109.47172 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47218 * 299.99991 * 11 9 7 15 15 C 1.46902 * 111.00315 * 164.23573 * 5 4 3 16 16 C 1.50708 * 109.46797 * 293.95531 * 15 5 4 17 17 C 1.38254 * 119.99794 * 270.01921 * 16 15 5 18 18 C 1.38212 * 119.99894 * 180.02562 * 17 16 15 19 19 C 1.38256 * 119.99856 * 359.76299 * 18 17 16 20 20 C 1.38215 * 120.00011 * 0.46530 * 19 18 17 21 21 C 1.50698 * 119.99828 * 179.78720 * 20 19 18 22 22 C 1.53004 * 109.47257 * 59.73158 * 21 20 19 23 23 C 1.52999 * 109.47249 * 299.72751 * 21 20 19 24 24 C 1.38209 * 120.00079 * 89.99884 * 16 15 5 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47092 * 299.99879 * 1 2 3 27 27 H 1.08996 * 109.47355 * 60.00231 * 1 2 3 28 28 H 1.09003 * 109.47092 * 240.00121 * 2 1 3 29 29 H 1.08999 * 109.46670 * 120.00039 * 2 1 3 30 30 H 1.09003 * 109.47071 * 60.00108 * 3 2 1 31 31 H 1.09002 * 109.47487 * 300.00353 * 3 2 1 32 32 H 1.09000 * 109.47411 * 59.70944 * 4 3 2 33 33 H 1.08996 * 109.47498 * 299.70537 * 4 3 2 34 34 H 1.08997 * 109.47064 * 280.34921 * 6 5 4 35 35 H 1.08997 * 109.47176 * 40.35526 * 6 5 4 36 36 H 0.96998 * 119.99937 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47455 * 173.95519 * 15 5 4 38 38 H 1.08997 * 109.46794 * 53.95022 * 15 5 4 39 39 H 1.08003 * 120.00296 * 359.97438 * 17 16 15 40 40 H 1.08002 * 119.99954 * 179.97438 * 18 17 16 41 41 H 1.08002 * 119.99941 * 180.25738 * 19 18 17 42 42 H 1.09001 * 109.46920 * 179.73050 * 21 20 19 43 43 H 1.08994 * 109.46738 * 59.99801 * 22 21 20 44 44 H 1.09001 * 109.47067 * 299.99801 * 22 21 20 45 45 H 1.09003 * 109.46816 * 179.97438 * 22 21 20 46 46 H 1.08999 * 109.47298 * 180.02562 * 23 21 20 47 47 H 1.08996 * 109.47467 * 300.00131 * 23 21 20 48 48 H 1.09001 * 109.46915 * 60.00296 * 23 21 20 49 49 H 1.08002 * 120.00068 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0077 6 6 3.8309 3.4601 -1.3136 7 6 3.8826 4.9586 -1.1619 8 1 4.1408 5.3963 -0.2089 9 6 3.6002 5.7708 -2.2396 10 7 3.2861 5.2378 -3.4002 11 14 3.6636 7.6282 -2.0513 12 1 5.0310 8.0378 -1.6421 13 1 3.3212 8.2690 -3.3464 14 1 2.6884 8.0544 -1.0157 15 6 5.4796 2.8858 0.3640 16 6 5.6411 2.4556 1.7993 17 6 5.5751 3.3930 2.8135 18 6 5.7238 2.9986 4.1298 19 6 5.9337 1.6660 4.4326 20 6 6.0044 0.7297 3.4184 21 6 6.2379 -0.7221 3.7483 22 6 5.1088 -1.2288 4.6480 23 6 7.5756 -0.8711 4.4758 24 6 5.8549 1.1241 2.1018 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9243 -0.8882 33 1 3.9337 0.9331 0.8917 34 1 4.6027 3.1390 -2.0130 35 1 2.8520 3.1669 -1.6929 36 1 3.0877 5.8092 -4.1585 37 1 5.8441 3.9063 0.2473 38 1 6.0517 2.2195 -0.2815 39 1 5.4082 4.4335 2.5771 40 1 5.6727 3.7309 4.9220 41 1 6.0457 1.3572 5.4615 42 1 6.2582 -1.3052 2.8275 43 1 4.1559 -1.1226 4.1296 44 1 5.0885 -0.6457 5.5687 45 1 5.2775 -2.2790 4.8862 46 1 7.7447 -1.9212 4.7140 47 1 8.3800 -0.5102 3.8348 48 1 7.5553 -0.2880 5.3965 49 1 5.9065 0.3919 1.3096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237458142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -7.108781 kcal Electronic energy + Delta-G solvation = -23429.955700 eV Core-core repulsion = 20355.469147 eV Total energy + Delta-G solvation = -3074.486553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.56903 -37.18287 -35.34486 -34.15426 -32.56881 -30.99543 -29.81524 -28.59901 -27.23904 -26.81603 -24.74885 -23.15718 -22.62189 -21.86892 -20.83992 -19.94692 -18.96670 -16.45317 -16.41686 -15.49120 -15.13500 -14.96347 -14.63788 -14.31243 -14.04792 -13.82544 -13.54370 -13.47278 -13.39068 -12.86342 -12.53122 -12.40792 -12.14937 -12.01803 -11.91197 -11.86950 -11.53711 -11.29973 -11.16610 -11.08283 -10.95440 -10.75119 -10.68451 -10.62552 -10.52461 -10.30093 -10.22265 -10.05558 -9.57049 -9.22375 -8.49637 -8.39750 -8.27779 -7.19719 -5.99351 -4.00231 1.66981 1.67643 3.35129 3.39197 3.42171 4.01780 4.45532 4.66673 4.78237 4.96930 5.13240 5.20269 5.23340 5.31369 5.35316 5.38913 5.41565 5.48826 5.50179 5.54736 5.64057 5.71036 5.76521 5.79972 5.86061 5.86994 6.02688 6.07930 6.09819 6.13344 6.15063 6.18847 6.25386 6.29770 6.35832 6.39192 6.46515 6.55667 6.76926 6.78408 6.82816 6.90518 7.06082 7.28290 7.32950 7.37496 7.85377 8.16039 8.24779 8.58513 9.06866 9.63537 11.11189 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.004540 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.977015 B = 6165.756700 C = 7655.651603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.051 3.949 5 N -0.528 5.528 6 C 0.191 3.809 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.097 3.903 16 C -0.056 4.056 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.083 4.083 21 C -0.055 4.055 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.115 4.115 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.064 0.936 34 H -0.012 1.012 35 H 0.038 0.962 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.027 0.973 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -12.351 13.975 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.077 4.077 5 N -0.252 5.252 6 C 0.067 3.933 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.031 4.031 16 C -0.057 4.057 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.074 4.074 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.134 4.134 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.005 0.995 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.444 -12.027 14.111 18.858 hybrid contribution 0.393 0.642 -0.691 1.023 sum 3.837 -11.384 13.420 18.012 Atomic orbital electron populations 1.21749 0.96240 1.00774 1.01934 1.21490 0.95552 0.97735 1.01164 1.21562 0.95281 0.95172 1.03013 1.22144 0.95411 0.90978 0.99212 1.62137 1.14385 1.14513 1.34176 1.19797 0.96454 0.94256 0.82842 1.21129 1.46034 0.90697 0.96317 0.92028 1.24973 0.95534 0.98824 0.95242 1.69947 1.47651 1.35304 1.01083 0.86593 0.78493 0.85379 0.77135 1.20319 1.21431 1.20212 1.20991 0.90664 1.01668 0.89762 1.20042 0.96466 0.92864 0.96320 1.21083 0.98859 0.99969 0.92086 1.21078 1.00659 0.95753 0.96457 1.20801 1.02292 0.93005 0.98295 1.19709 1.00510 0.94817 0.93235 1.20087 0.95440 0.92565 0.99290 1.21844 0.98259 1.00369 0.99512 1.21842 0.96494 1.01223 1.00386 1.20941 1.01367 0.95579 0.95476 0.93413 0.92890 0.92677 0.92568 0.92684 0.91749 0.91352 0.96335 0.91754 0.99470 0.94436 0.92945 0.89239 0.95502 0.85887 0.86613 0.86934 0.90763 0.92444 0.92577 0.92733 0.92719 0.92597 0.92570 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.98 5.28 -26.74 -0.14 -2.12 16 4 C 0.05 0.94 4.80 -3.83 -0.02 0.93 16 5 N -0.53 -11.35 4.37 -237.52 -1.04 -12.39 16 6 C 0.19 4.95 4.59 -4.98 -0.02 4.92 16 7 C -0.50 -14.04 8.61 -34.44 -0.30 -14.34 16 8 H 0.06 1.70 7.66 -52.48 -0.40 1.30 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 11 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.10 1.88 4.94 -4.97 -0.02 1.86 16 16 C -0.06 -0.94 4.94 -104.62 -0.52 -1.46 16 17 C -0.10 -1.61 9.70 -39.58 -0.38 -2.00 16 18 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 19 C -0.13 -1.58 8.71 -39.58 -0.34 -1.93 16 20 C -0.08 -1.07 4.78 -104.63 -0.50 -1.57 16 21 C -0.06 -0.57 3.09 -91.77 -0.28 -0.86 16 22 C -0.14 -1.33 9.00 37.16 0.33 -0.99 16 23 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 24 C -0.12 -1.70 7.47 -39.59 -0.30 -1.99 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.36 6.52 -51.93 -0.34 1.02 16 32 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.06 1.10 5.14 -51.93 -0.27 0.83 16 34 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 35 H 0.04 1.04 6.23 -51.93 -0.32 0.71 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 1.87 7.26 -51.93 -0.38 1.49 16 38 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 39 H 0.12 1.99 8.06 -52.48 -0.42 1.56 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.11 1.18 7.10 -52.49 -0.37 0.81 16 42 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 49 H 0.11 1.61 7.62 -52.49 -0.40 1.21 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -29.24 384.96 -11.08 -40.33 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.12 Total: 0.05 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -2.44 Total: -24.47 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.30 Total: -38.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.24 -11.08 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237458142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.219 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds