Wall clock time and date at job start Tue Mar 31 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.52991 * 109.47063 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47157 * 179.70887 * 4 3 2 6 6 C 1.46901 * 111.00004 * 288.19055 * 5 4 3 7 7 C 1.50700 * 109.47102 * 160.35434 * 6 5 4 8 8 H 1.08004 * 120.00233 * 4.63950 * 7 6 5 9 9 C 1.37878 * 120.00173 * 184.64671 * 7 6 5 10 10 N 1.31518 * 119.99537 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00277 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47076 * 59.99950 * 11 9 7 13 13 H 1.48497 * 109.47172 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47218 * 299.99991 * 11 9 7 15 15 C 1.46902 * 111.00315 * 164.23573 * 5 4 3 16 16 C 1.50708 * 109.46797 * 293.95531 * 15 5 4 17 17 C 1.38254 * 119.99794 * 270.01921 * 16 15 5 18 18 C 1.38212 * 119.99894 * 180.02562 * 17 16 15 19 19 C 1.38256 * 119.99856 * 359.76299 * 18 17 16 20 20 C 1.38215 * 120.00011 * 0.46530 * 19 18 17 21 21 C 1.50698 * 119.99828 * 179.78720 * 20 19 18 22 22 C 1.53004 * 109.47257 * 59.73158 * 21 20 19 23 23 C 1.52999 * 109.47249 * 299.72751 * 21 20 19 24 24 C 1.38209 * 120.00079 * 89.99884 * 16 15 5 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47092 * 299.99879 * 1 2 3 27 27 H 1.08996 * 109.47355 * 60.00231 * 1 2 3 28 28 H 1.09003 * 109.47092 * 240.00121 * 2 1 3 29 29 H 1.08999 * 109.46670 * 120.00039 * 2 1 3 30 30 H 1.09003 * 109.47071 * 60.00108 * 3 2 1 31 31 H 1.09002 * 109.47487 * 300.00353 * 3 2 1 32 32 H 1.09000 * 109.47411 * 59.70944 * 4 3 2 33 33 H 1.08996 * 109.47498 * 299.70537 * 4 3 2 34 34 H 1.08997 * 109.47064 * 280.34921 * 6 5 4 35 35 H 1.08997 * 109.47176 * 40.35526 * 6 5 4 36 36 H 0.96998 * 119.99937 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47455 * 173.95519 * 15 5 4 38 38 H 1.08997 * 109.46794 * 53.95022 * 15 5 4 39 39 H 1.08003 * 120.00296 * 359.97438 * 17 16 15 40 40 H 1.08002 * 119.99954 * 179.97438 * 18 17 16 41 41 H 1.08002 * 119.99941 * 180.25738 * 19 18 17 42 42 H 1.09001 * 109.46920 * 179.73050 * 21 20 19 43 43 H 1.08994 * 109.46738 * 59.99801 * 22 21 20 44 44 H 1.09001 * 109.47067 * 299.99801 * 22 21 20 45 45 H 1.09003 * 109.46816 * 179.97438 * 22 21 20 46 46 H 1.08999 * 109.47298 * 180.02562 * 23 21 20 47 47 H 1.08996 * 109.47467 * 300.00131 * 23 21 20 48 48 H 1.09001 * 109.46915 * 60.00296 * 23 21 20 49 49 H 1.08002 * 120.00068 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0077 6 6 3.8309 3.4601 -1.3136 7 6 3.8826 4.9586 -1.1619 8 1 4.1408 5.3963 -0.2089 9 6 3.6002 5.7708 -2.2396 10 7 3.2861 5.2378 -3.4002 11 14 3.6636 7.6282 -2.0513 12 1 5.0310 8.0378 -1.6421 13 1 3.3212 8.2690 -3.3464 14 1 2.6884 8.0544 -1.0157 15 6 5.4796 2.8858 0.3640 16 6 5.6411 2.4556 1.7993 17 6 5.5751 3.3930 2.8135 18 6 5.7238 2.9986 4.1298 19 6 5.9337 1.6660 4.4326 20 6 6.0044 0.7297 3.4184 21 6 6.2379 -0.7221 3.7483 22 6 5.1088 -1.2288 4.6480 23 6 7.5756 -0.8711 4.4758 24 6 5.8549 1.1241 2.1018 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9243 -0.8882 33 1 3.9337 0.9331 0.8917 34 1 4.6027 3.1390 -2.0130 35 1 2.8520 3.1669 -1.6929 36 1 3.0877 5.8092 -4.1585 37 1 5.8441 3.9063 0.2473 38 1 6.0517 2.2195 -0.2815 39 1 5.4082 4.4335 2.5771 40 1 5.6727 3.7309 4.9220 41 1 6.0457 1.3572 5.4615 42 1 6.2582 -1.3052 2.8275 43 1 4.1559 -1.1226 4.1296 44 1 5.0885 -0.6457 5.5687 45 1 5.2775 -2.2790 4.8862 46 1 7.7447 -1.9212 4.7140 47 1 8.3800 -0.5102 3.8348 48 1 7.5553 -0.2880 5.3965 49 1 5.9065 0.3919 1.3096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237458142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:36 Heat of formation + Delta-G solvation = -20.744163 kcal Electronic energy + Delta-G solvation = -23430.546975 eV Core-core repulsion = 20355.469147 eV Total energy + Delta-G solvation = -3075.077827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73355 -38.71668 -36.34301 -35.56982 -34.57186 -32.31776 -30.89834 -30.14726 -28.58146 -27.91756 -26.26842 -24.67300 -23.93818 -23.02902 -22.15461 -21.49253 -20.11701 -18.58617 -17.50614 -16.90853 -16.58052 -16.34336 -16.14599 -15.69685 -15.56179 -15.06293 -14.65333 -14.49473 -14.36547 -14.20618 -14.02183 -13.83084 -13.36205 -13.30117 -13.13454 -13.00874 -12.81328 -12.79344 -12.72413 -12.52486 -12.20573 -12.14443 -12.10383 -11.95841 -11.72451 -11.66105 -11.45940 -11.44022 -11.29430 -11.17462 -10.58276 -9.65013 -9.44095 -8.99617 -8.19034 -6.28836 0.51333 0.55783 1.39694 1.42954 1.50729 2.40146 2.84319 3.12551 3.43096 3.75615 3.87030 4.00276 4.04094 4.13056 4.23785 4.31753 4.32994 4.38697 4.40906 4.46750 4.56235 4.64411 4.68145 4.73993 4.77866 4.83304 4.87255 4.95140 4.98395 5.00817 5.04748 5.09646 5.14664 5.17009 5.21886 5.26306 5.28902 5.31270 5.38860 5.41985 5.45407 5.49997 5.65209 5.67628 5.78857 5.85707 6.08991 6.19621 6.38257 6.63785 6.85719 7.40195 8.91356 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.004540 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.977015 B = 6165.756700 C = 7655.651603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.107 4.107 4 C 0.054 3.946 5 N -0.534 5.534 6 C 0.208 3.792 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.966 3.034 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.103 3.897 16 C -0.075 4.075 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.056 4.056 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.012 0.988 33 H 0.086 0.914 34 H -0.043 1.043 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -13.485 16.852 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.145 4.145 4 C -0.074 4.074 5 N -0.258 5.258 6 C 0.082 3.918 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.025 4.025 16 C -0.075 4.075 17 C -0.141 4.141 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.077 4.077 21 C -0.074 4.074 22 C -0.198 4.198 23 C -0.197 4.197 24 C -0.142 4.142 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.104 0.896 34 H -0.025 1.025 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.128 0.872 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.690 -13.175 17.006 21.826 hybrid contribution 0.360 0.923 -1.532 1.824 sum 4.050 -12.252 15.474 20.148 Atomic orbital electron populations 1.21737 0.94978 1.02246 1.01552 1.21442 0.96631 0.94987 1.02150 1.21510 0.94477 0.97506 1.00978 1.22217 0.96084 0.89302 0.99790 1.62087 1.16092 1.16364 1.31216 1.19424 0.93998 0.94007 0.84351 1.21415 1.46110 0.91853 0.96379 0.92262 1.25873 0.94872 1.03990 0.94743 1.70079 1.48376 1.37192 1.01894 0.85482 0.78961 0.79093 0.77371 1.19286 1.20777 1.19421 1.20870 0.89167 1.00296 0.92154 1.19786 0.99087 0.94209 0.94427 1.21102 1.00374 0.99307 0.93307 1.21338 0.99484 0.96998 0.95768 1.21164 1.00517 0.92331 0.99695 1.20036 0.98754 0.96572 0.92316 1.20155 0.96771 0.90574 0.99912 1.21833 0.97100 1.01584 0.99240 1.21827 0.95148 1.02497 1.00218 1.20992 1.01830 0.94588 0.96782 0.90972 0.92612 0.93798 0.92344 0.90829 0.92444 0.94608 0.96978 0.89631 1.02550 0.96870 0.92741 0.91670 0.95839 0.87222 0.84172 0.83928 0.90797 0.93480 0.91932 0.91008 0.91042 0.93411 0.91882 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.11 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.11 -3.86 5.28 30.59 0.16 -3.70 16 4 C 0.05 2.06 4.80 86.30 0.41 2.48 16 5 N -0.53 -24.20 4.37 -905.38 -3.96 -28.16 16 6 C 0.21 11.48 4.59 85.56 0.39 11.87 16 7 C -0.52 -30.26 8.61 25.60 0.22 -30.04 16 8 H 0.06 3.40 7.66 -2.91 -0.02 3.38 16 9 C 0.00 0.18 5.46 84.65 0.46 0.64 16 10 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 11 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 C 0.10 4.22 4.94 85.56 0.42 4.64 16 16 C -0.07 -2.54 4.94 -19.86 -0.10 -2.64 16 17 C -0.12 -3.90 9.70 22.27 0.22 -3.69 16 18 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 19 C -0.12 -2.63 8.71 22.27 0.19 -2.44 16 20 C -0.08 -1.80 4.78 -19.87 -0.09 -1.89 16 21 C -0.06 -0.98 3.09 -11.54 -0.04 -1.02 16 22 C -0.14 -2.12 9.00 71.98 0.65 -1.47 16 23 C -0.14 -2.03 9.01 71.98 0.65 -1.38 16 24 C -0.12 -3.55 7.47 22.27 0.17 -3.39 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.51 6.52 -2.39 -0.02 1.49 16 32 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 33 H 0.09 2.91 5.14 -2.39 -0.01 2.90 16 34 H -0.04 -2.58 8.00 -2.39 -0.02 -2.60 16 35 H 0.01 0.79 6.23 -2.39 -0.01 0.77 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.06 2.93 7.26 -2.39 -0.02 2.91 16 38 H 0.02 0.96 8.06 -2.39 -0.02 0.94 16 39 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.14 2.33 7.10 -2.91 -0.02 2.31 16 42 H 0.07 1.32 7.88 -2.39 -0.02 1.30 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.86 7.37 -2.39 -0.02 0.85 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.83 7.40 -2.39 -0.02 0.82 16 49 H 0.12 3.22 7.62 -2.91 -0.02 3.20 16 Total: -1.00 -65.57 384.96 4.06 -61.51 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.87 Total: 16.99 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 4.84 Total: -40.57 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.67 Total: -85.20 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.57 4.06 -61.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237458142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.767 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds