Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00548 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47278 * 90.00449 * 8 6 4 10 10 H 1.48502 * 109.46981 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00330 * 8 6 4 12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 13 13 C 1.50702 * 109.46796 * 66.04964 * 12 2 1 14 14 S 1.76200 * 126.03678 * 270.02510 * 13 12 2 15 15 C 1.70975 * 90.29274 * 179.97438 * 14 13 12 16 16 N 1.29048 * 110.17937 * 0.02562 * 15 14 13 17 17 C 1.31813 * 117.11856 * 359.75213 * 16 15 14 18 18 Br 1.89098 * 122.75925 * 180.30545 * 17 16 15 19 19 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 20 20 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 22 22 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 23 23 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 24 24 H 0.96999 * 120.00406 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46988 * 186.04548 * 12 2 1 26 26 H 1.08996 * 109.46945 * 306.05035 * 12 2 1 27 27 H 1.08000 * 124.91064 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 1.7141 3.9391 -2.6618 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0626 -0.4556 10 1 2.6931 5.7258 -0.3237 11 1 2.6292 3.7760 1.1168 12 6 1.9955 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 16 0.1746 -3.0015 1.5691 15 6 0.6965 -4.4944 0.9193 16 7 1.8399 -4.3516 0.3383 17 6 2.3704 -3.1449 0.3443 18 35 4.0335 -2.7543 -0.4664 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 1.5610 1.9274 0.8308 23 1 3.0796 1.3445 0.1082 24 1 1.9886 4.8552 -2.8238 25 1 3.0798 -0.6610 1.1755 26 1 1.5611 -0.3872 2.0627 27 1 0.1489 -5.4228 0.9861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238036788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = 37.327027 kcal Electronic energy + Delta-G solvation = -13446.207779 eV Core-core repulsion = 10990.782154 eV Total energy + Delta-G solvation = -2455.425625 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82654 -38.44119 -34.76633 -33.17704 -31.56007 -29.63687 -28.04500 -26.42257 -24.62371 -22.21115 -20.61336 -19.39805 -18.84780 -17.04116 -16.67088 -16.23554 -15.88570 -15.40850 -14.95039 -14.88694 -14.42147 -13.85584 -13.53143 -13.14651 -12.91822 -12.49609 -12.34285 -12.10374 -11.94350 -11.87488 -11.48326 -11.31554 -10.79706 -10.75978 -10.38351 -9.76895 -9.07662 -8.25486 -6.28912 -0.46814 -0.10851 0.46679 1.00205 1.37700 1.38434 1.48443 1.50089 2.36475 3.07946 3.23232 3.44591 3.78468 3.97346 4.37565 4.47242 4.54705 4.64986 4.71913 4.88268 4.99837 5.16850 5.53358 5.93233 6.26831 6.41401 6.59583 6.77311 7.34212 8.91083 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.006246 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.955784 B = 4481.777711 C = 5290.248251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.538 5.538 3 C 0.174 3.826 4 C -0.512 4.512 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.949 5.949 8 Si 0.944 3.056 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.246 1.246 12 C 0.121 3.879 13 C -0.190 4.190 14 S 0.209 5.791 15 C 0.030 3.970 16 N -0.486 5.486 17 C 0.054 3.946 18 Br 0.010 6.990 19 H 0.051 0.949 20 H 0.070 0.930 21 H 0.029 0.971 22 H -0.003 1.003 23 H 0.031 0.969 24 H 0.266 0.734 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -16.791 12.613 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.262 5.262 3 C 0.047 3.953 4 C -0.551 4.551 5 H 0.055 0.945 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.169 1.169 12 C -0.009 4.009 13 C -0.315 4.315 14 S 0.461 5.539 15 C -0.269 4.269 16 N -0.200 5.200 17 C -0.158 4.158 18 Br 0.093 6.907 19 H 0.070 0.930 20 H 0.089 0.911 21 H 0.047 0.953 22 H 0.014 0.986 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.490 -16.916 12.102 20.805 hybrid contribution 0.603 1.101 0.251 1.280 sum 0.113 -15.815 12.353 20.068 Atomic orbital electron populations 1.22296 0.87325 1.00888 1.00681 1.61805 1.08430 1.15075 1.40931 1.19959 0.95362 0.84837 0.95106 1.21204 1.34817 0.97365 1.01693 0.94462 1.25813 0.97001 0.98418 0.97605 1.70049 1.48675 1.13875 1.26374 0.85761 0.79401 0.77637 0.80439 1.19209 1.20973 1.16919 1.20572 1.01481 0.85689 0.93116 1.25870 0.99298 1.01042 1.05267 1.83859 1.17270 1.01534 1.51193 1.29051 0.94511 1.04616 0.98739 1.66154 1.11808 1.21921 1.20131 1.21672 0.98520 0.90654 1.04912 1.96746 1.19940 1.93578 1.80422 0.92965 0.91116 0.95259 0.98565 0.95047 0.92507 0.88803 0.92057 0.73730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 9.17 127.69 1.17 2.50 15 2 N -0.54 -21.52 4.74 -931.66 -4.42 -25.94 15 3 C 0.17 8.06 3.79 85.56 0.32 8.38 15 4 C -0.51 -29.20 9.07 25.60 0.23 -28.97 15 5 H 0.04 2.39 7.35 -2.91 -0.02 2.37 15 6 C 0.01 0.51 5.47 84.65 0.46 0.97 15 7 N -0.95 -59.14 13.96 21.45 0.30 -58.84 15 8 Si 0.94 43.19 27.47 68.60 1.88 45.08 15 9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 11 H -0.25 -10.28 6.54 99.48 0.65 -9.62 15 12 C 0.12 3.84 5.16 85.56 0.44 4.28 15 13 C -0.19 -5.38 5.32 24.66 0.13 -5.24 15 14 S 0.21 4.03 21.75 -56.49 -1.23 2.81 15 15 C 0.03 0.55 12.23 130.65 1.60 2.15 15 16 N -0.49 -13.23 10.55 -198.62 -2.09 -15.33 15 17 C 0.05 1.63 7.18 83.67 0.60 2.23 15 18 Br 0.01 0.33 32.97 -20.37 -0.67 -0.34 15 19 H 0.05 2.23 6.86 -2.38 -0.02 2.21 15 20 H 0.07 2.18 5.87 -2.39 -0.01 2.17 15 21 H 0.03 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.00 -0.15 7.18 -2.39 -0.02 -0.17 15 23 H 0.03 1.43 7.36 -2.39 -0.02 1.41 15 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 25 H 0.09 2.99 7.22 -2.39 -0.02 2.98 15 26 H 0.06 1.71 8.12 -2.39 -0.02 1.69 15 27 H 0.25 2.14 8.06 -2.91 -0.02 2.12 15 Total: -1.00 -68.53 264.04 -0.14 -68.67 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: 1.13 Total: -2.41 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.96 Total: -13.70 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -6.22 Total: -100.11 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.23 Total: 2.81 kcal Atomic # 35 Polarization: 0.33 SS G_CDS: -0.67 Total: -0.34 kcal Total: -68.53 -0.14 -68.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238036788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.000 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds