Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47670 * 270.00345 * 3 2 1 5 5 H 1.48505 * 109.46935 * 30.00464 * 3 2 1 6 6 H 1.48503 * 109.47192 * 149.99923 * 3 2 1 7 7 C 1.38879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00219 * 359.97438 * 7 2 1 9 9 N 1.37050 * 120.00302 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00208 * 179.97438 * 9 7 2 11 11 S 1.71202 * 120.00376 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99967 * 179.97438 * 10 9 7 13 13 C 1.39977 * 119.99753 * 185.02696 * 12 10 9 14 14 C 1.38947 * 120.08270 * 269.35057 * 13 12 10 15 15 Cl 1.73601 * 120.04040 * 359.70170 * 14 13 12 16 16 C 1.38225 * 119.91947 * 179.97438 * 14 13 12 17 17 C 1.38275 * 120.08029 * 359.97438 * 16 14 13 18 18 C 1.38281 * 120.16304 * 0.02562 * 17 16 14 19 19 C 1.38231 * 120.07603 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 120.03628 * 180.02562 * 19 18 17 21 21 H 0.97008 * 119.99920 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99797 * 359.97438 * 9 7 2 23 23 H 0.96991 * 119.99731 * 5.03225 * 12 10 9 24 24 H 1.08007 * 119.96136 * 179.97438 * 16 14 13 25 25 H 1.08002 * 119.91969 * 180.02562 * 17 16 14 26 26 H 1.07998 * 119.96024 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0465 -1.4000 5 1 1.4462 2.6526 0.7002 6 1 3.5463 1.4401 0.7001 7 6 2.0091 -1.2027 -0.0005 8 1 1.4691 -2.1380 -0.0005 9 7 3.3796 -1.2028 0.0000 10 6 4.0534 -2.3700 0.0000 11 16 3.1975 -3.8526 -0.0013 12 7 5.4012 -2.3700 0.0000 13 6 6.1011 -3.5776 -0.1062 14 6 6.4611 -4.2770 1.0391 15 17 6.0503 -3.6504 2.6051 16 6 7.1516 -5.4694 0.9303 17 6 7.4837 -5.9667 -0.3165 18 6 7.1271 -5.2734 -1.4586 19 6 6.4374 -4.0798 -1.3574 20 17 5.9896 -3.2106 -2.7919 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3628 0.0004 23 1 5.8862 -1.5332 0.0737 24 1 7.4322 -6.0135 1.8202 25 1 8.0229 -6.8989 -0.3985 26 1 7.3885 -5.6646 -2.4307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246248253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = 35.142055 kcal Electronic energy + Delta-G solvation = -16054.426327 eV Core-core repulsion = 13118.209710 eV Total energy + Delta-G solvation = -2936.216617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74904 -37.66431 -36.47818 -35.99265 -34.93323 -32.44066 -30.53085 -29.38663 -25.56326 -22.70907 -22.69355 -22.13658 -19.27875 -18.11543 -17.10867 -16.21092 -15.98688 -15.38113 -14.48908 -14.23218 -14.21173 -13.51231 -13.35715 -13.07477 -12.67356 -12.25986 -12.04916 -11.82926 -11.37632 -11.03365 -10.90102 -10.78604 -10.69834 -10.41427 -9.92124 -9.79235 -8.76986 -8.70784 -8.56944 -6.87040 -6.66209 -5.96050 -4.23972 1.11277 1.12661 2.07633 2.44064 2.51771 2.74120 2.86051 2.88917 3.19471 3.55905 3.67792 3.84437 4.63991 4.79701 4.82552 5.12070 5.17054 5.33981 5.46655 6.00119 6.12979 6.23944 6.50071 6.75208 7.14627 7.42670 7.95000 8.28739 8.72734 8.92301 10.24614 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.006281 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.955460 B = 4456.558635 C = 5041.454006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.058 3.942 3 Si 0.874 3.126 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.289 4.289 8 H 0.162 0.838 9 N -0.491 5.491 10 C 0.464 3.536 11 S -0.711 6.711 12 N -0.679 5.679 13 C 0.206 3.794 14 C -0.007 4.007 15 Cl -0.049 7.049 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.012 4.012 20 Cl -0.051 7.051 21 H 0.286 0.714 22 H 0.370 0.630 23 H 0.390 0.610 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.192 -3.170 -0.497 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.154 4.154 3 Si 0.698 3.302 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.423 4.423 8 H 0.180 0.820 9 N -0.096 5.096 10 C 0.107 3.893 11 S -0.583 6.583 12 N -0.317 5.317 13 C 0.110 3.890 14 C -0.036 4.036 15 Cl -0.020 7.020 16 C -0.127 4.127 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.041 4.041 20 Cl -0.022 7.022 21 H 0.097 0.903 22 H 0.205 0.795 23 H 0.228 0.772 24 H 0.155 0.845 25 H 0.156 0.844 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.087 -3.879 -0.497 16.556 hybrid contribution 0.990 2.686 0.076 2.864 sum 17.077 -1.193 -0.421 17.124 Atomic orbital electron populations 1.69626 1.05805 1.28923 1.41647 1.25244 0.95709 0.98399 0.96000 0.86755 0.80102 0.83640 0.79696 1.18690 1.18958 1.19276 1.20390 0.77301 0.98941 1.45714 0.82045 1.41300 1.08432 1.04156 1.55673 1.20832 0.82352 0.91105 0.95055 1.92583 1.70472 1.15596 1.79611 1.41338 1.03163 1.06392 1.80774 1.16384 0.94514 0.88206 0.89912 1.21122 1.00207 0.95595 0.86661 1.98378 1.92499 1.86743 1.24347 1.20984 0.98707 0.94130 0.98886 1.20975 0.99990 0.99758 0.91002 1.20976 0.98674 0.93081 0.99955 1.21148 1.00546 0.95076 0.87375 1.98378 1.91576 1.75948 1.36252 0.90331 0.79458 0.77228 0.84456 0.84373 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.93 13.96 55.49 0.77 -21.15 15 2 C 0.06 1.45 5.50 -17.47 -0.10 1.36 15 3 Si 0.87 17.37 27.74 -169.99 -4.71 12.66 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.27 -4.88 6.52 56.52 0.37 -4.52 15 7 C -0.29 -7.56 9.99 -14.98 -0.15 -7.71 15 8 H 0.16 4.91 6.45 -52.49 -0.34 4.57 15 9 N -0.49 -11.07 5.09 -12.53 -0.06 -11.14 15 10 C 0.46 10.33 7.91 -86.92 -0.69 9.65 15 11 S -0.71 -18.83 27.35 -107.50 -2.94 -21.77 15 12 N -0.68 -12.12 4.05 -11.35 -0.05 -12.16 15 13 C 0.21 3.45 4.59 -83.61 -0.38 3.07 15 14 C -0.01 -0.10 6.34 -39.32 -0.25 -0.35 15 15 Cl -0.05 -0.78 28.44 -51.86 -1.47 -2.25 15 16 C -0.11 -1.34 9.82 -39.57 -0.39 -1.72 15 17 C -0.10 -1.07 10.04 -39.55 -0.40 -1.46 15 18 C -0.11 -1.33 9.82 -39.57 -0.39 -1.72 15 19 C -0.01 -0.19 6.34 -39.32 -0.25 -0.44 15 20 Cl -0.05 -0.80 28.44 -51.86 -1.47 -2.27 15 21 H 0.29 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.37 7.25 5.78 -40.82 -0.24 7.02 15 23 H 0.39 5.80 8.84 -40.82 -0.36 5.44 15 24 H 0.14 1.37 8.06 -52.48 -0.42 0.94 15 25 H 0.14 1.01 8.06 -52.49 -0.42 0.58 15 26 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -31.21 279.69 -10.09 -41.30 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -1.37 Total: 11.90 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.99 Total: 0.67 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.66 Total: -44.45 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -4.71 Total: 12.66 kcal Atomic # 16 Polarization: -18.83 SS G_CDS: -2.94 Total: -21.77 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -2.95 Total: -4.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.21 -10.09 -41.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246248253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.442 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds