Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48498 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46984 * 300.00067 * 3 2 1 6 6 H 1.48500 * 109.47065 * 59.99674 * 3 2 1 7 7 C 1.40432 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.40363 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.33185 * 126.68018 * 180.02562 * 9 7 2 11 11 C 1.34313 * 105.48290 * 180.02562 * 10 9 7 12 12 C 1.48414 * 126.20555 * 179.97438 * 11 10 9 13 13 C 1.38888 * 119.98295 * 179.72093 * 12 11 10 14 14 C 1.39209 * 119.52499 * 179.75354 * 13 12 11 15 15 C 1.46843 * 134.23690 * 180.13704 * 14 13 12 16 16 C 1.33969 * 106.17794 * 180.35017 * 15 14 13 17 17 O 1.34424 * 110.18170 * 359.97438 * 16 15 14 18 18 C 1.34850 * 110.91692 * 359.97438 * 17 16 15 19 19 C 1.39135 * 133.24718 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 119.95415 * 0.02562 * 19 18 17 21 21 C 1.37691 * 120.09231 * 180.02562 * 19 18 17 22 22 N 1.31280 * 107.58605 * 359.97438 * 11 10 9 23 23 O 1.21273 * 110.53207 * 0.02562 * 22 11 10 24 24 H 0.96998 * 119.99668 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.23747 * 0.02562 * 13 12 11 26 26 H 1.08002 * 126.91070 * 0.36292 * 15 14 13 27 27 H 1.08000 * 124.91060 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.72154 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8805 2.3964 -1.2125 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2162 0.0005 8 1 3.0875 -1.2161 0.0010 9 6 1.3056 -2.4317 0.0005 10 7 1.8329 -3.6548 0.0015 11 6 0.7862 -4.4965 0.0005 12 6 0.8534 -5.9791 0.0004 13 6 -0.3169 -6.7270 0.0052 14 6 -0.2427 -8.1171 -0.0001 15 6 -1.2387 -9.1961 -0.0002 16 6 -0.5464 -10.3431 0.0009 17 8 0.7735 -10.0881 0.0010 18 6 1.0073 -8.7600 -0.0006 19 6 2.1707 -7.9969 -0.0007 20 17 3.7204 -8.7792 0.0008 21 6 2.0945 -6.6221 -0.0020 22 7 -0.3071 -3.7698 -0.0004 23 8 -0.0327 -2.5885 -0.0006 24 1 -0.4849 0.8401 0.0004 25 1 -1.2776 -6.2336 0.0085 26 1 -2.3132 -9.0870 -0.0011 27 1 -0.9852 -11.3299 0.0015 28 1 3.0014 -6.0356 -0.0016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247385528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = 69.601791 kcal Electronic energy + Delta-G solvation = -19152.106033 eV Core-core repulsion = 15777.063681 eV Total energy + Delta-G solvation = -3375.042352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.14048 -42.42540 -38.04385 -36.40058 -34.21793 -33.74414 -32.62112 -31.19164 -29.37855 -29.29110 -26.58503 -24.02698 -22.88602 -21.54965 -21.20925 -20.78388 -18.26077 -17.53472 -16.94289 -16.19044 -15.92323 -15.60865 -15.31511 -14.96153 -14.51707 -13.75213 -13.41548 -13.22031 -12.95743 -12.73660 -12.39614 -11.75148 -11.67363 -11.62078 -11.53130 -11.23853 -10.91148 -10.54832 -10.26476 -10.23717 -10.00095 -9.82513 -9.10163 -8.80350 -8.22455 -7.86461 -7.17213 -5.12663 0.85303 1.14569 2.12151 2.28498 2.68494 2.71522 2.92611 3.00368 3.11542 3.52496 3.68142 4.20070 4.33092 4.61152 4.75313 4.94376 5.13205 5.19300 5.29683 5.37673 5.47390 5.62361 5.93791 6.03681 6.21234 6.30833 6.56627 6.74723 6.78631 7.01366 7.18300 7.77826 7.97631 8.18528 8.35401 9.81587 10.18133 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.003767 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.352825 B = 7431.850197 C = 8368.360306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.937 3.063 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.116 0.884 9 C 0.305 3.695 10 N -0.604 5.604 11 C 0.190 3.810 12 C 0.017 3.983 13 C -0.042 4.042 14 C -0.123 4.123 15 C -0.201 4.201 16 C 0.002 3.998 17 O -0.188 6.188 18 C 0.057 3.943 19 C -0.030 4.030 20 Cl -0.062 7.062 21 C -0.045 4.045 22 N -0.452 5.452 23 O 0.055 5.945 24 H 0.293 0.707 25 H 0.142 0.858 26 H 0.161 0.839 27 H 0.209 0.791 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -12.152 0.004 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.156 4.156 3 Si 0.760 3.240 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.134 0.866 9 C 0.115 3.885 10 N -0.348 5.348 11 C -0.081 4.081 12 C 0.015 3.985 13 C -0.063 4.063 14 C -0.124 4.124 15 C -0.220 4.220 16 C -0.063 4.063 17 O -0.089 6.089 18 C 0.008 3.992 19 C -0.057 4.057 20 Cl -0.034 7.034 21 C -0.065 4.065 22 N -0.179 5.179 23 O 0.004 5.996 24 H 0.104 0.896 25 H 0.160 0.840 26 H 0.179 0.821 27 H 0.225 0.775 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.570 -12.853 0.005 12.866 hybrid contribution 0.198 0.907 -0.001 0.928 sum -0.372 -11.946 0.004 11.952 Atomic orbital electron populations 1.69636 1.07805 1.30945 1.30458 1.26222 0.95156 1.02419 0.91770 0.85762 0.80615 0.78689 0.78960 1.17753 1.19292 1.19285 1.18658 0.95169 0.85338 1.45757 0.86640 1.24153 0.79677 0.93883 0.90754 1.72363 1.27461 0.98408 1.36586 1.22986 0.87195 0.94063 1.03816 1.17207 0.92003 0.88145 1.01190 1.20673 0.99047 0.90501 0.96036 1.19709 0.91952 0.94080 1.06708 1.22501 0.99944 0.90410 1.09146 1.23929 0.79705 1.00258 1.02405 1.84034 1.26083 1.22662 1.76129 1.19164 0.94059 0.81676 1.04281 1.19399 0.83577 0.91123 1.11633 1.98357 1.27174 1.80638 1.97195 1.20956 0.99405 0.90136 0.96029 1.74583 1.23754 0.91080 1.28496 1.85526 1.25867 1.17530 1.70665 0.89565 0.84027 0.82145 0.77466 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.73 12.05 55.57 0.67 -18.06 15 2 C 0.07 1.63 5.50 -17.28 -0.10 1.53 15 3 Si 0.94 16.99 29.56 -169.99 -5.03 11.96 15 4 H -0.25 -4.52 7.11 56.52 0.40 -4.12 15 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 6 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 7 C -0.41 -10.48 9.48 -37.96 -0.36 -10.84 15 8 H 0.12 2.77 7.85 -52.49 -0.41 2.36 15 9 C 0.31 8.41 7.80 -16.33 -0.13 8.28 15 10 N -0.60 -16.06 11.28 -11.62 -0.13 -16.20 15 11 C 0.19 4.74 7.77 -156.51 -1.22 3.52 15 12 C 0.02 0.34 5.87 -104.89 -0.62 -0.27 15 13 C -0.04 -0.76 9.73 -38.98 -0.38 -1.14 15 14 C -0.12 -1.95 6.39 -105.18 -0.67 -2.62 15 15 C -0.20 -2.38 11.14 -37.60 -0.42 -2.79 15 16 C 0.00 0.02 11.95 29.23 0.35 0.37 15 17 O -0.19 -2.60 10.58 3.86 0.04 -2.56 15 18 C 0.06 0.91 7.20 -38.37 -0.28 0.63 15 19 C -0.03 -0.50 6.32 -39.45 -0.25 -0.75 15 20 Cl -0.06 -0.91 28.95 -51.86 -1.50 -2.41 15 21 C -0.05 -0.83 9.44 -39.21 -0.37 -1.20 15 22 N -0.45 -11.97 11.82 31.48 0.37 -11.60 15 23 O 0.05 1.55 9.72 15.14 0.15 1.69 15 24 H 0.29 6.34 8.29 -40.82 -0.34 6.00 15 25 H 0.14 2.51 7.85 -52.49 -0.41 2.09 15 26 H 0.16 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.21 1.10 8.06 -52.49 -0.42 0.68 15 28 H 0.16 2.94 7.84 -52.48 -0.41 2.53 15 LS Contribution 281.85 15.07 4.25 4.25 Total: -1.00 -29.51 281.85 -6.83 -36.33 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -1.22 Total: 1.87 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.43 Total: -5.28 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.91 Total: -45.86 kcal Atomic # 8 Polarization: -1.05 SS G_CDS: 0.19 Total: -0.87 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.51 -6.83 -36.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247385528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.934 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds