Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48498 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46984 * 300.00067 * 3 2 1 6 6 H 1.48500 * 109.47065 * 59.99674 * 3 2 1 7 7 C 1.40432 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.40363 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.33185 * 126.68018 * 180.02562 * 9 7 2 11 11 C 1.34313 * 105.48290 * 180.02562 * 10 9 7 12 12 C 1.48414 * 126.20555 * 179.97438 * 11 10 9 13 13 C 1.38888 * 119.98295 * 179.72093 * 12 11 10 14 14 C 1.39209 * 119.52499 * 179.75354 * 13 12 11 15 15 C 1.46843 * 134.23690 * 180.13704 * 14 13 12 16 16 C 1.33969 * 106.17794 * 180.35017 * 15 14 13 17 17 O 1.34424 * 110.18170 * 359.97438 * 16 15 14 18 18 C 1.34850 * 110.91692 * 359.97438 * 17 16 15 19 19 C 1.39135 * 133.24718 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 119.95415 * 0.02562 * 19 18 17 21 21 C 1.37691 * 120.09231 * 180.02562 * 19 18 17 22 22 N 1.31280 * 107.58605 * 359.97438 * 11 10 9 23 23 O 1.21273 * 110.53207 * 0.02562 * 22 11 10 24 24 H 0.96998 * 119.99668 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.23747 * 0.02562 * 13 12 11 26 26 H 1.08002 * 126.91070 * 0.36292 * 15 14 13 27 27 H 1.08000 * 124.91060 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.72154 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8805 2.3964 -1.2125 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2162 0.0005 8 1 3.0875 -1.2161 0.0010 9 6 1.3056 -2.4317 0.0005 10 7 1.8329 -3.6548 0.0015 11 6 0.7862 -4.4965 0.0005 12 6 0.8534 -5.9791 0.0004 13 6 -0.3169 -6.7270 0.0052 14 6 -0.2427 -8.1171 -0.0001 15 6 -1.2387 -9.1961 -0.0002 16 6 -0.5464 -10.3431 0.0009 17 8 0.7735 -10.0881 0.0010 18 6 1.0073 -8.7600 -0.0006 19 6 2.1707 -7.9969 -0.0007 20 17 3.7204 -8.7792 0.0008 21 6 2.0945 -6.6221 -0.0020 22 7 -0.3071 -3.7698 -0.0004 23 8 -0.0327 -2.5885 -0.0006 24 1 -0.4849 0.8401 0.0004 25 1 -1.2776 -6.2336 0.0085 26 1 -2.3132 -9.0870 -0.0011 27 1 -0.9852 -11.3299 0.0015 28 1 3.0014 -6.0356 -0.0016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247385528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = 50.685727 kcal Electronic energy + Delta-G solvation = -19152.926295 eV Core-core repulsion = 15777.063681 eV Total energy + Delta-G solvation = -3375.862614 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.09097 -43.54667 -39.38668 -37.66934 -36.11523 -35.58720 -33.76098 -32.95571 -30.94345 -30.51264 -28.53076 -25.50897 -24.36723 -23.18525 -22.49339 -22.38157 -20.00656 -18.71523 -18.20598 -17.95951 -17.41795 -17.27586 -16.78888 -16.64669 -15.78843 -15.24186 -15.06584 -14.30901 -14.27038 -13.90287 -13.74273 -13.62974 -13.29017 -13.12105 -13.04065 -12.59632 -12.23100 -12.12411 -12.01904 -11.94134 -11.59932 -11.10673 -11.07006 -10.58411 -9.56579 -9.26964 -8.98035 -7.13227 -0.42842 -0.24619 0.84158 0.97271 1.28730 1.41895 1.54790 1.60171 1.63597 1.91171 2.15461 2.55999 2.89540 3.01669 3.26245 3.38690 3.55824 3.87574 3.94487 4.16112 4.17684 4.50604 4.56416 4.64581 4.92462 4.93073 5.19387 5.25322 5.34461 5.38072 5.81429 5.93600 6.01394 6.22146 6.41357 8.03227 8.18851 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.003767 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.352825 B = 7431.850197 C = 8368.360306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.028 3.972 3 Si 1.022 2.978 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.125 0.875 9 C 0.273 3.727 10 N -0.627 5.627 11 C 0.200 3.800 12 C -0.019 4.019 13 C -0.041 4.041 14 C -0.129 4.129 15 C -0.214 4.214 16 C 0.030 3.970 17 O -0.191 6.191 18 C 0.053 3.947 19 C -0.025 4.025 20 Cl -0.044 7.044 21 C -0.054 4.054 22 N -0.477 5.477 23 O 0.021 5.979 24 H 0.307 0.693 25 H 0.137 0.863 26 H 0.190 0.810 27 H 0.266 0.734 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -13.627 0.005 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.194 4.194 3 Si 0.839 3.161 4 H -0.170 1.170 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.464 4.464 8 H 0.142 0.858 9 C 0.085 3.915 10 N -0.372 5.372 11 C -0.071 4.071 12 C -0.021 4.021 13 C -0.061 4.061 14 C -0.130 4.130 15 C -0.233 4.233 16 C -0.033 4.033 17 O -0.092 6.092 18 C 0.004 3.996 19 C -0.053 4.053 20 Cl -0.015 7.015 21 C -0.075 4.075 22 N -0.210 5.210 23 O -0.023 6.023 24 H 0.119 0.881 25 H 0.155 0.845 26 H 0.207 0.793 27 H 0.282 0.718 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.573 -14.318 0.006 14.330 hybrid contribution 0.151 1.135 -0.001 1.145 sum -0.423 -13.183 0.005 13.190 Atomic orbital electron populations 1.69690 1.09722 1.33056 1.29487 1.27398 0.95936 1.05824 0.90249 0.84558 0.79092 0.72885 0.79606 1.17002 1.18098 1.18085 1.19203 0.95855 0.85887 1.45475 0.85761 1.24764 0.79992 0.95023 0.91720 1.72338 1.28236 0.98579 1.38032 1.23671 0.86343 0.95960 1.01157 1.17255 0.93915 0.86049 1.04861 1.20632 0.97953 0.91676 0.95850 1.20057 0.93666 0.93659 1.05611 1.22876 1.00978 0.89158 1.10240 1.25066 0.77764 1.02115 0.98374 1.84083 1.28305 1.21073 1.75717 1.19202 0.93742 0.82842 1.03853 1.19317 0.84855 0.90557 1.10525 1.98358 1.26042 1.80042 1.97049 1.20745 0.98226 0.91058 0.97452 1.74495 1.24423 0.90822 1.31297 1.85456 1.26137 1.18384 1.72367 0.88129 0.84465 0.79307 0.71797 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.75 12.05 21.91 0.26 -39.48 15 2 C 0.03 1.33 5.50 85.42 0.47 1.80 15 3 Si 1.02 33.95 29.56 68.60 2.03 35.98 15 4 H -0.25 -7.87 7.11 99.48 0.71 -7.17 15 5 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 6 H -0.26 -8.05 7.11 99.48 0.71 -7.35 15 7 C -0.43 -22.45 9.48 23.32 0.22 -22.23 15 8 H 0.12 6.10 7.85 -2.91 -0.02 6.07 15 9 C 0.27 15.86 7.80 85.06 0.66 16.53 15 10 N -0.63 -35.31 11.28 -305.05 -3.44 -38.75 15 11 C 0.20 10.59 7.77 137.43 1.07 11.65 15 12 C -0.02 -0.80 5.87 -20.04 -0.12 -0.92 15 13 C -0.04 -1.50 9.73 22.66 0.22 -1.28 15 14 C -0.13 -3.90 6.39 -20.23 -0.13 -4.03 15 15 C -0.21 -4.29 11.14 23.55 0.26 -4.03 15 16 C 0.03 0.47 11.95 66.85 0.80 1.27 15 17 O -0.19 -4.61 10.58 -9.10 -0.10 -4.70 15 18 C 0.05 1.60 7.20 23.05 0.17 1.77 15 19 C -0.03 -0.83 6.32 22.36 0.14 -0.69 15 20 Cl -0.04 -1.24 28.95 -2.72 -0.08 -1.31 15 21 C -0.05 -2.08 9.44 22.51 0.21 -1.87 15 22 N -0.48 -26.89 11.82 -56.02 -0.66 -27.56 15 23 O 0.02 1.28 9.72 64.25 0.62 1.90 15 24 H 0.31 13.34 8.29 -92.71 -0.77 12.57 15 25 H 0.14 5.07 7.85 -2.91 -0.02 5.05 15 26 H 0.19 2.65 8.06 -2.91 -0.02 2.63 15 27 H 0.27 0.91 8.06 -2.91 -0.02 0.88 15 28 H 0.15 5.82 7.84 -2.91 -0.02 5.80 15 Total: -1.00 -68.68 281.85 3.85 -64.83 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.24 Total: 11.13 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 3.98 Total: -2.03 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.84 Total: -105.80 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.53 Total: -2.80 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -68.68 3.85 -64.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247385528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.514 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds