Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31487 * 1 3 3 Si 1.86800 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46778 * 270.00297 * 3 2 1 5 5 H 1.48494 * 109.47162 * 29.99883 * 3 2 1 6 6 H 1.48502 * 109.47109 * 150.00118 * 3 2 1 7 7 C 1.38877 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00743 * 0.02562 * 7 2 1 9 9 N 1.37047 * 119.99605 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00214 * 179.97438 * 9 7 2 11 11 S 1.71199 * 119.99798 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00107 * 180.27656 * 10 9 7 13 13 C 1.39958 * 119.99884 * 175.41727 * 12 10 9 14 14 C 1.38862 * 120.06477 * 47.36020 * 13 12 10 15 15 C 1.38114 * 119.95253 * 179.69628 * 14 13 12 16 16 C 1.38403 * 120.08277 * 0.60687 * 15 14 13 17 17 Cl 1.73593 * 119.93967 * 179.70026 * 16 15 14 18 18 C 1.38367 * 120.12398 * 359.67018 * 16 15 14 19 19 C 1.38225 * 120.04541 * 0.02985 * 18 16 15 20 20 Cl 1.73601 * 120.03986 * 179.97438 * 19 18 16 21 21 H 0.96996 * 119.99747 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00337 * 0.02562 * 9 7 2 23 23 H 0.97005 * 120.00129 * 355.41708 * 12 10 9 24 24 H 1.08004 * 120.02368 * 0.02562 * 14 13 12 25 25 H 1.08004 * 119.96024 * 180.30017 * 15 14 13 26 26 H 1.07995 * 119.98096 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 2.4962 2.0464 -1.4001 5 1 1.4463 2.6526 0.7000 6 1 3.5464 1.4402 0.7000 7 6 2.0092 -1.2027 0.0005 8 1 1.4693 -2.1380 0.0005 9 7 3.3797 -1.2027 0.0000 10 6 4.0536 -2.3699 0.0011 11 16 3.1977 -3.8526 0.0024 12 7 5.4014 -2.3699 0.0062 13 6 6.1008 -3.5782 0.1041 14 6 5.7467 -4.6541 -0.6992 15 6 6.4426 -5.8434 -0.6051 16 6 7.4842 -5.9682 0.2977 17 17 8.3512 -7.4672 0.4183 18 6 7.8361 -4.9001 1.1038 19 6 7.1473 -3.7055 1.0096 20 17 7.5885 -2.3657 2.0216 21 1 -0.4849 0.8400 0.0004 22 1 3.8647 -0.3627 -0.0004 23 1 5.8867 -1.5324 -0.0580 24 1 4.9311 -4.5592 -1.4009 25 1 6.1704 -6.6787 -1.2333 26 1 8.6495 -4.9999 1.8072 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248514824.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = 31.220414 kcal Electronic energy + Delta-G solvation = -15705.553063 eV Core-core repulsion = 12769.166391 eV Total energy + Delta-G solvation = -2936.386672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 289.974 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76506 -37.86911 -36.65754 -36.21433 -34.86953 -32.62930 -30.74173 -29.16422 -25.74226 -23.41374 -22.34705 -21.93802 -19.38411 -18.22477 -17.15756 -16.33517 -15.66544 -15.49528 -14.68307 -14.39864 -13.81842 -13.66584 -13.51140 -13.27983 -12.87148 -12.32783 -12.25359 -11.87657 -11.55053 -11.19957 -11.05135 -10.91363 -10.84331 -10.59894 -10.19793 -10.07627 -9.20283 -8.77444 -8.14242 -7.09185 -6.84255 -5.99721 -4.44077 1.08953 1.36738 1.94318 2.26290 2.39171 2.62228 2.74331 2.75817 3.06369 3.50391 3.60801 3.77983 4.43810 4.60166 4.90630 5.15596 5.39779 5.44340 5.83330 6.03565 6.31311 6.38311 6.60261 6.75707 7.04892 7.29364 7.79070 8.05255 8.48729 8.69405 10.00393 Molecular weight = 289.97amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.004632 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.521979 B = 6043.622892 C = 6871.984666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.059 3.941 3 Si 0.877 3.123 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.285 4.285 8 H 0.165 0.835 9 N -0.476 5.476 10 C 0.426 3.574 11 S -0.712 6.712 12 N -0.662 5.662 13 C 0.189 3.811 14 C -0.046 4.046 15 C -0.104 4.104 16 C -0.035 4.035 17 Cl -0.076 7.076 18 C -0.105 4.105 19 C -0.049 4.049 20 Cl -0.068 7.068 21 H 0.290 0.710 22 H 0.373 0.627 23 H 0.394 0.606 24 H 0.167 0.833 25 H 0.138 0.862 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.336 -2.053 -0.360 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.156 4.156 3 Si 0.700 3.300 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.420 4.420 8 H 0.182 0.818 9 N -0.079 5.079 10 C 0.068 3.932 11 S -0.578 6.578 12 N -0.293 5.293 13 C 0.092 3.908 14 C -0.070 4.070 15 C -0.126 4.126 16 C -0.062 4.062 17 Cl -0.047 7.047 18 C -0.126 4.126 19 C -0.080 4.080 20 Cl -0.039 7.039 21 H 0.101 0.899 22 H 0.209 0.791 23 H 0.231 0.769 24 H 0.184 0.816 25 H 0.155 0.845 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.298 -2.818 -0.240 14.575 hybrid contribution 1.248 2.577 0.306 2.880 sum 15.546 -0.241 0.067 15.548 Atomic orbital electron populations 1.69625 1.05943 1.29539 1.39214 1.25338 0.95823 0.98811 0.95593 0.86690 0.80190 0.83104 0.79974 1.18365 1.18587 1.19065 1.20508 0.77291 0.99174 1.44999 0.81789 1.41339 1.08538 1.04347 1.53629 1.20787 0.82851 0.91196 0.98326 1.92516 1.69506 1.15118 1.80706 1.41410 1.03249 1.07044 1.77611 1.17030 0.91698 0.87688 0.94434 1.21621 0.96472 0.90842 0.98097 1.20950 0.94152 0.98761 0.98695 1.20636 0.97369 0.87531 1.00704 1.98347 1.76121 1.32593 1.97642 1.20451 1.01317 0.90095 1.00704 1.20646 1.01250 0.90242 0.95819 1.98349 1.92264 1.45628 1.67689 0.89871 0.79126 0.76923 0.81621 0.84459 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.28 13.96 55.49 0.77 -19.51 15 2 C 0.06 1.37 5.50 -17.46 -0.10 1.27 15 3 Si 0.88 16.23 27.74 -169.99 -4.71 11.51 15 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 5 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 6 H -0.27 -4.54 6.52 56.52 0.37 -4.17 15 7 C -0.28 -7.02 9.99 -14.98 -0.15 -7.17 15 8 H 0.17 4.71 6.45 -52.49 -0.34 4.37 15 9 N -0.48 -10.11 5.09 -12.54 -0.06 -10.17 15 10 C 0.43 9.08 7.81 -86.91 -0.68 8.40 15 11 S -0.71 -17.81 24.38 -107.50 -2.62 -20.44 15 12 N -0.66 -11.36 4.83 -11.37 -0.05 -11.41 15 13 C 0.19 3.13 5.87 -83.65 -0.49 2.64 15 14 C -0.05 -0.75 7.88 -39.40 -0.31 -1.06 15 15 C -0.10 -1.47 9.82 -39.57 -0.39 -1.86 15 16 C -0.03 -0.46 6.32 -39.47 -0.25 -0.71 15 17 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 15 18 C -0.10 -1.40 9.61 -39.54 -0.38 -1.78 15 19 C -0.05 -0.72 6.34 -39.32 -0.25 -0.97 15 20 Cl -0.07 -0.92 28.23 -51.86 -1.46 -2.38 15 21 H 0.29 6.52 8.31 -40.82 -0.34 6.18 15 22 H 0.37 6.80 5.78 -40.82 -0.24 6.56 15 23 H 0.39 5.64 8.55 -40.82 -0.35 5.29 15 24 H 0.17 3.04 6.31 -49.76 -0.31 2.73 15 25 H 0.14 1.68 8.06 -52.48 -0.42 1.26 15 26 H 0.14 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -27.50 274.56 -9.75 -37.25 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -1.25 Total: 14.64 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.99 Total: -1.22 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.66 Total: -41.10 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -4.71 Total: 11.51 kcal Atomic # 16 Polarization: -17.81 SS G_CDS: -2.62 Total: -20.44 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -2.97 Total: -4.78 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.50 -9.75 -37.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248514824.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.469 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds