Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46916 * 2 1 4 4 C 1.52998 * 109.47052 * 185.62464 * 3 2 1 5 5 H 1.08995 * 109.47012 * 54.97521 * 4 3 2 6 6 C 1.53004 * 109.47092 * 174.97577 * 4 3 2 7 7 C 1.52995 * 109.46822 * 185.16794 * 6 4 3 8 8 C 1.50704 * 109.46680 * 184.92984 * 7 6 4 9 9 C 1.38245 * 119.99781 * 269.72670 * 8 7 6 10 10 C 1.38235 * 119.99382 * 179.76751 * 9 8 7 11 11 C 1.38229 * 120.00544 * 0.50347 * 10 9 8 12 12 C 1.38235 * 120.00150 * 359.75122 * 11 10 9 13 13 C 1.38234 * 120.00558 * 90.00038 * 8 7 6 14 14 N 1.46904 * 109.47251 * 294.97595 * 4 3 2 15 15 C 1.46903 * 110.99988 * 86.56046 * 14 4 3 16 16 C 1.52995 * 109.46811 * 76.88950 * 15 14 4 17 17 C 1.46901 * 110.99662 * 322.60865 * 14 4 3 18 18 C 1.50706 * 109.46656 * 190.10706 * 17 14 4 19 19 H 1.07994 * 120.00056 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99878 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99582 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00057 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46910 * 60.00143 * 22 20 18 24 24 H 1.48494 * 109.47053 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47193 * 300.00364 * 22 20 18 26 26 H 1.08996 * 109.47992 * 300.00124 * 1 2 3 27 27 H 1.09004 * 109.47099 * 60.00162 * 1 2 3 28 28 H 1.09008 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47276 * 240.00067 * 2 1 3 30 30 H 1.08995 * 109.46975 * 119.99620 * 2 1 3 31 31 H 1.09006 * 109.46931 * 65.62378 * 3 2 1 32 32 H 1.08995 * 109.46761 * 305.62898 * 3 2 1 33 33 H 1.09002 * 109.46785 * 305.16874 * 6 4 3 34 34 H 1.08997 * 109.46916 * 65.16521 * 6 4 3 35 35 H 1.08993 * 109.47608 * 304.92474 * 7 6 4 36 36 H 1.09002 * 109.47216 * 64.93386 * 7 6 4 37 37 H 1.07991 * 120.00070 * 359.97438 * 9 8 7 38 38 H 1.08002 * 119.99566 * 180.22762 * 10 9 8 39 39 H 1.08003 * 120.00436 * 179.72213 * 11 10 9 40 40 H 1.07996 * 120.00235 * 179.97438 * 12 11 10 41 41 H 1.08004 * 119.99409 * 0.02562 * 13 8 7 42 42 H 1.09000 * 109.46754 * 316.89441 * 15 14 4 43 43 H 1.08992 * 109.47042 * 196.89326 * 15 14 4 44 44 H 1.09001 * 109.47809 * 294.91607 * 16 15 14 45 45 H 1.09005 * 109.47437 * 54.91636 * 16 15 14 46 46 H 1.09008 * 109.47041 * 174.91096 * 16 15 14 47 47 H 1.09005 * 109.47315 * 310.10423 * 17 14 4 48 48 H 1.09000 * 109.47148 * 70.11142 * 17 14 4 49 49 H 0.97006 * 119.99442 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5634 1.4449 -0.1414 5 1 3.8465 0.8835 -1.0317 6 6 4.0616 2.8861 -0.2673 7 6 5.5676 2.8831 -0.5374 8 6 6.0799 4.3004 -0.5412 9 6 6.1093 5.0217 -1.7202 10 6 6.5747 6.3233 -1.7226 11 6 7.0205 6.9002 -0.5483 12 6 6.9961 6.1773 0.6297 13 6 6.5257 4.8774 0.6332 14 7 4.1661 0.8202 1.0437 15 6 4.2519 -0.6376 0.8841 16 6 5.4194 -0.9813 -0.0430 17 6 3.4230 1.1738 2.2606 18 6 4.2012 0.7280 3.4717 19 1 5.1528 0.2321 3.3496 20 6 3.6989 0.9542 4.7356 21 7 2.5403 1.5586 4.8842 22 14 4.6638 0.4024 6.2368 23 1 5.9866 1.0771 6.2505 24 1 3.9126 0.7596 7.4669 25 1 4.8591 -1.0688 6.1864 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7611 1.9265 0.9361 32 1 1.5966 1.9846 -0.8353 33 1 3.5455 3.3782 -1.0916 34 1 3.8598 3.4226 0.6598 35 1 6.0755 2.3154 0.2420 36 1 5.7619 2.4240 -1.5067 37 1 5.7655 4.5693 -2.6386 38 1 6.5943 6.8880 -2.6431 39 1 7.3884 7.9156 -0.5511 40 1 7.3447 6.6279 1.5472 41 1 6.5073 4.3123 1.5534 42 1 3.3232 -1.0111 0.4527 43 1 4.4124 -1.1008 1.8576 44 1 5.2164 -0.5947 -1.0417 45 1 6.3341 -0.5305 0.3421 46 1 5.5397 -2.0637 -0.0899 47 1 3.2798 2.2537 2.2980 48 1 2.4520 0.6785 2.2501 49 1 2.1870 1.7181 5.7734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254494463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 6.403655 kcal Electronic energy + Delta-G solvation = -23906.234234 eV Core-core repulsion = 20832.333624 eV Total energy + Delta-G solvation = -3073.900610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.20987 -38.42193 -33.90237 -33.50552 -32.46991 -30.87697 -30.67300 -29.32365 -27.42324 -25.88451 -24.18036 -22.57306 -22.34178 -21.89591 -20.76922 -20.23551 -18.57355 -16.74824 -16.50227 -15.26930 -14.98955 -14.86343 -14.76597 -14.28229 -13.91576 -13.87353 -13.26743 -13.17639 -13.05340 -12.72799 -12.57387 -12.44395 -12.07370 -11.96936 -11.78612 -11.41787 -11.26063 -11.02391 -10.98850 -10.88016 -10.75277 -10.66502 -10.57571 -10.39013 -10.23530 -10.15856 -10.09266 -9.74415 -9.45960 -9.06303 -8.72231 -8.43398 -8.37227 -6.99419 -5.98509 -3.98656 1.57587 1.60494 3.34498 3.39052 3.41817 3.99886 4.45477 4.97949 5.00254 5.06595 5.15191 5.26482 5.36375 5.37591 5.43523 5.54554 5.60538 5.71088 5.72832 5.80983 5.85159 5.89682 5.96924 6.06409 6.08415 6.11370 6.20443 6.22527 6.24319 6.31169 6.34186 6.42752 6.46780 6.56603 6.65437 6.66157 6.72531 6.75457 6.78743 6.80657 6.88099 6.92527 7.03496 7.24607 7.40424 7.50501 7.87249 8.20305 8.34088 8.66493 9.09805 9.65112 11.11836 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005370 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.188037 B = 5212.559335 C = 6700.712186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.150 4.150 4 C 0.083 3.917 5 H 0.063 0.937 6 C -0.095 4.095 7 C -0.074 4.074 8 C -0.069 4.069 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.135 4.135 12 C -0.120 4.120 13 C -0.111 4.111 14 N -0.525 5.525 15 C 0.037 3.963 16 C -0.142 4.142 17 C 0.192 3.808 18 C -0.505 4.505 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.028 0.972 48 H 0.000 1.000 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 3.634 -13.074 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.189 4.189 4 C -0.026 4.026 5 H 0.081 0.919 6 C -0.133 4.133 7 C -0.111 4.111 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.153 4.153 12 C -0.138 4.138 13 C -0.129 4.129 14 N -0.249 5.249 15 C -0.091 4.091 16 C -0.200 4.200 17 C 0.067 3.933 18 C -0.544 4.544 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.204 1.204 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.018 0.982 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.995 3.875 -12.876 14.027 hybrid contribution -0.423 -0.417 0.850 1.037 sum 3.571 3.458 -12.026 13.013 Atomic orbital electron populations 1.21763 0.96620 1.00853 1.01394 1.21825 0.95254 0.97569 1.01964 1.22306 0.97286 0.96718 1.02548 1.21700 0.91231 0.95078 0.94618 0.91878 1.21483 0.94065 0.96460 1.01283 1.20568 0.96674 0.91382 1.02495 1.20159 0.96826 0.96949 0.92925 1.21047 1.00833 0.94570 0.97815 1.21055 0.99934 0.95454 0.97855 1.21051 1.01506 0.99660 0.93125 1.21163 0.99918 0.94810 0.97894 1.21258 0.98061 0.95198 0.98425 1.62274 1.52638 1.07573 1.02399 1.22323 0.96437 0.90095 1.00259 1.21789 0.99912 0.99276 0.98982 1.19770 0.92029 0.96270 0.85247 1.21180 1.05478 1.37524 0.90198 0.92150 1.24946 0.95037 0.95548 0.98923 1.69948 1.18412 1.42656 1.22798 0.86654 0.80052 0.79016 0.82218 1.20293 1.21500 1.20413 0.92571 0.93538 0.93415 0.93034 0.90219 0.90299 0.93140 0.93131 0.91365 0.88943 0.92314 0.86549 0.86717 0.86743 0.86403 0.85405 0.94452 0.90108 0.94019 0.92411 0.93820 0.95408 0.98232 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.13 -2.08 4.13 -26.73 -0.11 -2.19 16 3 C -0.15 -2.52 4.16 -26.73 -0.11 -2.64 16 4 C 0.08 1.40 1.80 -67.71 -0.12 1.28 16 5 H 0.06 0.99 6.59 -51.93 -0.34 0.65 16 6 C -0.09 -1.53 4.77 -26.73 -0.13 -1.66 16 7 C -0.07 -1.11 5.29 -27.88 -0.15 -1.26 16 8 C -0.07 -1.01 5.13 -104.62 -0.54 -1.54 16 9 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 10 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 11 C -0.14 -1.65 10.05 -39.59 -0.40 -2.05 16 12 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 13 C -0.11 -1.69 9.70 -39.58 -0.38 -2.07 16 14 N -0.52 -10.34 3.64 -228.08 -0.83 -11.17 16 15 C 0.04 0.68 4.90 -3.83 -0.02 0.66 16 16 C -0.14 -2.18 9.98 37.15 0.37 -1.81 16 17 C 0.19 4.67 3.19 -4.97 -0.02 4.65 16 18 C -0.51 -13.65 8.22 -34.44 -0.28 -13.94 16 19 H 0.06 1.63 7.34 -52.49 -0.39 1.25 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 30 H 0.08 1.49 4.54 -51.93 -0.24 1.25 16 31 H 0.08 1.57 6.07 -51.93 -0.32 1.25 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.28 7.10 -51.93 -0.37 0.91 16 35 H 0.09 1.58 7.57 -51.93 -0.39 1.18 16 36 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.13 2.04 8.06 -52.48 -0.42 1.61 16 42 H 0.04 0.66 4.23 -51.93 -0.22 0.44 16 43 H 0.08 1.69 6.58 -51.93 -0.34 1.35 16 44 H 0.04 0.59 6.98 -51.93 -0.36 0.23 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 47 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 48 H 0.00 0.00 5.42 -51.93 -0.28 -0.28 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -28.11 374.92 -10.89 -39.00 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.63 Total: 4.31 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.79 Total: -28.79 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.09 Total: -36.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.11 -10.89 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254494463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.400 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds