Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46916 * 2 1 4 4 C 1.52998 * 109.47052 * 185.62464 * 3 2 1 5 5 H 1.08995 * 109.47012 * 54.97521 * 4 3 2 6 6 C 1.53004 * 109.47092 * 174.97577 * 4 3 2 7 7 C 1.52995 * 109.46822 * 185.16794 * 6 4 3 8 8 C 1.50704 * 109.46680 * 184.92984 * 7 6 4 9 9 C 1.38245 * 119.99781 * 269.72670 * 8 7 6 10 10 C 1.38235 * 119.99382 * 179.76751 * 9 8 7 11 11 C 1.38229 * 120.00544 * 0.50347 * 10 9 8 12 12 C 1.38235 * 120.00150 * 359.75122 * 11 10 9 13 13 C 1.38234 * 120.00558 * 90.00038 * 8 7 6 14 14 N 1.46904 * 109.47251 * 294.97595 * 4 3 2 15 15 C 1.46903 * 110.99988 * 86.56046 * 14 4 3 16 16 C 1.52995 * 109.46811 * 76.88950 * 15 14 4 17 17 C 1.46901 * 110.99662 * 322.60865 * 14 4 3 18 18 C 1.50706 * 109.46656 * 190.10706 * 17 14 4 19 19 H 1.07994 * 120.00056 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99878 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99582 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00057 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46910 * 60.00143 * 22 20 18 24 24 H 1.48494 * 109.47053 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47193 * 300.00364 * 22 20 18 26 26 H 1.08996 * 109.47992 * 300.00124 * 1 2 3 27 27 H 1.09004 * 109.47099 * 60.00162 * 1 2 3 28 28 H 1.09008 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47276 * 240.00067 * 2 1 3 30 30 H 1.08995 * 109.46975 * 119.99620 * 2 1 3 31 31 H 1.09006 * 109.46931 * 65.62378 * 3 2 1 32 32 H 1.08995 * 109.46761 * 305.62898 * 3 2 1 33 33 H 1.09002 * 109.46785 * 305.16874 * 6 4 3 34 34 H 1.08997 * 109.46916 * 65.16521 * 6 4 3 35 35 H 1.08993 * 109.47608 * 304.92474 * 7 6 4 36 36 H 1.09002 * 109.47216 * 64.93386 * 7 6 4 37 37 H 1.07991 * 120.00070 * 359.97438 * 9 8 7 38 38 H 1.08002 * 119.99566 * 180.22762 * 10 9 8 39 39 H 1.08003 * 120.00436 * 179.72213 * 11 10 9 40 40 H 1.07996 * 120.00235 * 179.97438 * 12 11 10 41 41 H 1.08004 * 119.99409 * 0.02562 * 13 8 7 42 42 H 1.09000 * 109.46754 * 316.89441 * 15 14 4 43 43 H 1.08992 * 109.47042 * 196.89326 * 15 14 4 44 44 H 1.09001 * 109.47809 * 294.91607 * 16 15 14 45 45 H 1.09005 * 109.47437 * 54.91636 * 16 15 14 46 46 H 1.09008 * 109.47041 * 174.91096 * 16 15 14 47 47 H 1.09005 * 109.47315 * 310.10423 * 17 14 4 48 48 H 1.09000 * 109.47148 * 70.11142 * 17 14 4 49 49 H 0.97006 * 119.99442 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5634 1.4449 -0.1414 5 1 3.8465 0.8835 -1.0317 6 6 4.0616 2.8861 -0.2673 7 6 5.5676 2.8831 -0.5374 8 6 6.0799 4.3004 -0.5412 9 6 6.1093 5.0217 -1.7202 10 6 6.5747 6.3233 -1.7226 11 6 7.0205 6.9002 -0.5483 12 6 6.9961 6.1773 0.6297 13 6 6.5257 4.8774 0.6332 14 7 4.1661 0.8202 1.0437 15 6 4.2519 -0.6376 0.8841 16 6 5.4194 -0.9813 -0.0430 17 6 3.4230 1.1738 2.2606 18 6 4.2012 0.7280 3.4717 19 1 5.1528 0.2321 3.3496 20 6 3.6989 0.9542 4.7356 21 7 2.5403 1.5586 4.8842 22 14 4.6638 0.4024 6.2368 23 1 5.9866 1.0771 6.2505 24 1 3.9126 0.7596 7.4669 25 1 4.8591 -1.0688 6.1864 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7611 1.9265 0.9361 32 1 1.5966 1.9846 -0.8353 33 1 3.5455 3.3782 -1.0916 34 1 3.8598 3.4226 0.6598 35 1 6.0755 2.3154 0.2420 36 1 5.7619 2.4240 -1.5067 37 1 5.7655 4.5693 -2.6386 38 1 6.5943 6.8880 -2.6431 39 1 7.3884 7.9156 -0.5511 40 1 7.3447 6.6279 1.5472 41 1 6.5073 4.3123 1.5534 42 1 3.3232 -1.0111 0.4527 43 1 4.4124 -1.1008 1.8576 44 1 5.2164 -0.5947 -1.0417 45 1 6.3341 -0.5305 0.3421 46 1 5.5397 -2.0637 -0.0899 47 1 3.2798 2.2537 2.2980 48 1 2.4520 0.6785 2.2501 49 1 2.1870 1.7181 5.7734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254494463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = -6.208666 kcal Electronic energy + Delta-G solvation = -23906.781145 eV Core-core repulsion = 20832.333624 eV Total energy + Delta-G solvation = -3074.447521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43667 -39.74485 -35.34781 -34.91649 -34.34067 -32.14187 -31.68710 -30.92839 -28.79248 -27.63315 -25.43603 -24.41797 -23.36862 -23.25124 -22.05334 -21.45041 -20.12762 -18.69010 -17.53549 -16.88754 -16.59578 -16.17759 -16.01223 -15.76692 -15.45322 -15.18202 -14.56126 -14.36381 -14.20266 -14.14131 -13.87858 -13.84405 -13.70869 -13.43494 -13.01179 -12.87798 -12.81864 -12.59403 -12.51607 -12.28905 -12.18000 -12.02068 -11.99825 -11.89302 -11.71860 -11.59913 -11.47877 -11.23893 -11.03940 -10.96620 -10.54225 -9.75059 -9.49097 -8.63988 -8.14482 -6.22589 0.54704 0.57005 1.38903 1.41099 1.48705 2.41488 2.96003 3.17272 3.44149 3.77988 4.04634 4.07187 4.15129 4.24010 4.24744 4.31041 4.35967 4.43210 4.52287 4.57962 4.67242 4.70181 4.75233 4.76846 4.79336 4.86798 4.94713 4.96101 5.00255 5.10175 5.13046 5.21217 5.22821 5.25219 5.29181 5.34030 5.38659 5.45816 5.46340 5.52262 5.54418 5.62424 5.65872 5.69059 5.73386 5.91467 6.19600 6.22576 6.56782 6.87208 6.97666 7.46309 8.94907 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005370 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.188037 B = 5212.559335 C = 6700.712186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.145 4.145 4 C 0.084 3.916 5 H 0.090 0.910 6 C -0.087 4.087 7 C -0.063 4.063 8 C -0.085 4.085 9 C -0.127 4.127 10 C -0.123 4.123 11 C -0.135 4.135 12 C -0.131 4.131 13 C -0.140 4.140 14 N -0.527 5.527 15 C 0.035 3.965 16 C -0.131 4.131 17 C 0.217 3.783 18 C -0.517 4.517 19 H 0.056 0.944 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.957 3.043 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.269 1.269 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.064 0.936 47 H -0.007 1.007 48 H -0.022 1.022 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 3.701 -15.919 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.183 4.183 4 C -0.025 4.025 5 H 0.108 0.892 6 C -0.125 4.125 7 C -0.101 4.101 8 C -0.085 4.085 9 C -0.145 4.145 10 C -0.140 4.140 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.158 4.158 14 N -0.251 5.251 15 C -0.092 4.092 16 C -0.188 4.188 17 C 0.091 3.909 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.574 5.574 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.194 1.194 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.011 0.989 48 H -0.005 1.005 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.890 3.930 -15.734 16.939 hybrid contribution -0.704 -0.388 1.680 1.862 sum 4.187 3.543 -14.054 15.087 Atomic orbital electron populations 1.21731 0.95384 1.01796 1.01358 1.21758 0.96417 0.96641 1.01412 1.22229 0.97434 0.97368 1.01310 1.21822 0.91180 0.95571 0.93940 0.89222 1.21414 0.95385 0.95640 1.00109 1.20420 0.95279 0.91835 1.02546 1.20182 0.97814 0.96961 0.93584 1.21314 1.00415 0.95041 0.97708 1.21477 0.98367 0.95180 0.99017 1.21422 1.00599 1.00765 0.92521 1.21364 0.99924 0.94238 0.99336 1.21235 1.00265 0.96339 0.98002 1.62192 1.52081 1.08885 1.01963 1.22356 0.98554 0.88774 0.99564 1.21687 0.97656 1.00682 0.98795 1.19270 0.91119 0.93550 0.86959 1.21526 1.05407 1.37089 0.91548 0.92573 1.25776 0.95953 0.95632 1.01994 1.70083 1.20013 1.43937 1.23394 0.85622 0.78653 0.78959 0.78505 1.19762 1.21073 1.19379 0.94814 0.91321 0.92020 0.90586 0.93450 0.94493 0.90607 0.90843 0.95325 0.91827 0.89956 0.84277 0.83481 0.83920 0.85388 0.88079 0.93300 0.93386 0.92046 0.93480 0.91713 0.98913 1.00475 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.13 -3.95 4.13 30.60 0.13 -3.83 16 3 C -0.14 -4.90 4.16 30.60 0.13 -4.77 16 4 C 0.08 2.79 1.80 44.92 0.08 2.87 16 5 H 0.09 2.57 6.59 -2.39 -0.02 2.55 16 6 C -0.09 -2.84 4.77 30.59 0.15 -2.69 16 7 C -0.06 -1.90 5.29 29.85 0.16 -1.74 16 8 C -0.09 -2.50 5.13 -19.86 -0.10 -2.60 16 9 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 10 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 11 C -0.14 -2.99 10.05 22.27 0.22 -2.77 16 12 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 13 C -0.14 -4.46 9.70 22.27 0.22 -4.24 16 14 N -0.53 -21.55 3.64 -875.51 -3.18 -24.73 16 15 C 0.04 1.31 4.90 86.30 0.42 1.73 16 16 C -0.13 -3.79 9.98 71.98 0.72 -3.07 16 17 C 0.22 11.32 3.19 85.56 0.27 11.59 16 18 C -0.52 -29.42 8.22 25.60 0.21 -29.21 16 19 H 0.06 3.17 7.34 -2.91 -0.02 3.15 16 20 C 0.00 0.24 5.46 84.66 0.46 0.70 16 21 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 22 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.08 2.03 7.87 -2.39 -0.02 2.01 16 30 H 0.05 1.81 4.54 -2.39 -0.01 1.80 16 31 H 0.04 1.56 6.07 -2.38 -0.01 1.54 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.03 1.14 7.10 -2.39 -0.02 1.12 16 35 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 36 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 37 H 0.14 2.61 8.06 -2.92 -0.02 2.59 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.10 3.62 8.06 -2.91 -0.02 3.59 16 42 H 0.05 1.70 4.23 -2.39 -0.01 1.69 16 43 H 0.05 2.08 6.58 -2.39 -0.02 2.06 16 44 H 0.06 1.54 6.98 -2.39 -0.02 1.52 16 45 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.06 1.61 8.14 -2.38 -0.02 1.60 16 47 H -0.01 -0.42 6.66 -2.38 -0.02 -0.44 16 48 H -0.02 -1.25 5.42 -2.39 -0.01 -1.26 16 49 H 0.26 15.12 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -64.97 374.92 4.46 -60.51 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.89 Total: 23.37 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 4.44 Total: -49.81 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.90 Total: -81.38 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.97 4.46 -60.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254494463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.302 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds