Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.52998 * 109.47012 * 173.44848 * 3 2 1 5 5 H 1.08999 * 109.47165 * 302.39479 * 4 3 2 6 6 C 1.53008 * 109.46970 * 182.39983 * 4 3 2 7 7 C 1.52992 * 109.47281 * 177.76709 * 6 4 3 8 8 C 1.50699 * 109.47035 * 185.00086 * 7 6 4 9 9 C 1.38235 * 120.00084 * 269.72524 * 8 7 6 10 10 C 1.38235 * 119.99774 * 179.77023 * 9 8 7 11 11 C 1.38237 * 120.00182 * 0.50489 * 10 9 8 12 12 C 1.38233 * 119.99801 * 359.74930 * 11 10 9 13 13 C 1.38231 * 119.99876 * 90.00386 * 8 7 6 14 14 N 1.46900 * 109.47557 * 62.40293 * 4 3 2 15 15 C 1.46897 * 110.99596 * 273.22862 * 14 4 3 16 16 C 1.52998 * 109.47194 * 292.97441 * 15 14 4 17 17 C 1.46904 * 110.99951 * 37.17936 * 14 4 3 18 18 C 1.50695 * 109.47171 * 172.97007 * 17 14 4 19 19 H 1.08010 * 119.99937 * 4.80784 * 18 17 14 20 20 C 1.37879 * 120.00101 * 184.80661 * 18 17 14 21 21 N 1.31510 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99831 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47089 * 60.00131 * 22 20 18 24 24 H 1.48501 * 109.46930 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47304 * 300.00007 * 22 20 18 26 26 H 1.09001 * 109.47441 * 60.00468 * 1 2 3 27 27 H 1.09001 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47226 * 300.00207 * 1 2 3 29 29 H 1.08993 * 109.47438 * 239.99390 * 2 1 3 30 30 H 1.09001 * 109.47441 * 119.99532 * 2 1 3 31 31 H 1.09006 * 109.46510 * 293.44202 * 3 2 1 32 32 H 1.08992 * 109.47139 * 53.44507 * 3 2 1 33 33 H 1.08999 * 109.47014 * 297.77212 * 6 4 3 34 34 H 1.09001 * 109.47070 * 57.76357 * 6 4 3 35 35 H 1.08997 * 109.47086 * 305.00109 * 7 6 4 36 36 H 1.09003 * 109.47030 * 65.00179 * 7 6 4 37 37 H 1.07993 * 120.00039 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.99875 * 180.23993 * 10 9 8 39 39 H 1.08001 * 119.99958 * 179.72945 * 11 10 9 40 40 H 1.08000 * 119.99752 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.00508 * 0.02562 * 13 8 7 42 42 H 1.08993 * 109.47433 * 52.98336 * 15 14 4 43 43 H 1.09008 * 109.46845 * 172.97905 * 15 14 4 44 44 H 1.09000 * 109.47341 * 305.33215 * 16 15 14 45 45 H 1.09002 * 109.47026 * 65.33329 * 16 15 14 46 46 H 1.08997 * 109.46967 * 185.32918 * 16 15 14 47 47 H 1.08997 * 109.47264 * 292.97484 * 17 14 4 48 48 H 1.08997 * 109.46723 * 52.97283 * 17 14 4 49 49 H 0.97002 * 119.99949 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5611 1.4456 0.1646 5 1 3.8278 0.9292 1.0867 6 6 4.0646 2.8892 0.2246 7 6 5.5786 2.8925 0.4450 8 6 6.0566 4.3101 0.6267 9 6 6.4530 5.0519 -0.4703 10 6 6.8870 6.3537 -0.3041 11 6 6.9345 6.9104 0.9604 12 6 6.5432 6.1668 2.0580 13 6 6.1043 4.8666 1.8911 14 7 4.1787 0.7588 -0.9777 15 6 4.2593 -0.6887 -0.7407 16 6 5.2428 -0.9651 0.3982 17 6 3.4530 1.0490 -2.2216 18 6 4.2096 0.4730 -3.3906 19 1 5.0949 -0.1219 -3.2207 20 6 3.7718 0.7054 -4.6772 21 7 2.6935 1.4293 -4.8842 22 14 4.7101 -0.0081 -6.1263 23 1 4.7364 -1.4889 -6.0183 24 1 4.0389 0.3836 -7.3918 25 1 6.1005 0.5134 -6.1209 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7756 1.9213 -0.9429 32 1 1.5841 1.9891 0.8254 33 1 3.8328 3.3941 -0.7131 34 1 3.5764 3.4103 1.0482 35 1 5.8174 2.3115 1.3357 36 1 6.0726 2.4506 -0.4203 37 1 6.4196 4.6157 -1.4577 38 1 7.1929 6.9346 -1.1617 39 1 7.2778 7.9261 1.0907 40 1 6.5808 6.6016 3.0459 41 1 5.7993 4.2854 2.7489 42 1 3.2739 -1.0680 -0.4701 43 1 4.6038 -1.1866 -1.6471 44 1 6.2032 -0.5035 0.1690 45 1 4.8511 -0.5476 1.3258 46 1 5.3746 -2.0411 0.5113 47 1 2.4600 0.6021 -2.1757 48 1 3.3605 2.1280 -2.3448 49 1 2.3852 1.5925 -5.7893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254494464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = 9.237190 kcal Electronic energy + Delta-G solvation = -23884.071012 eV Core-core repulsion = 20810.293273 eV Total energy + Delta-G solvation = -3073.777738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.23938 -38.47670 -33.91291 -33.46919 -32.48489 -30.85890 -30.70270 -29.37770 -27.43320 -25.85932 -24.19425 -22.52003 -22.36569 -21.95838 -20.82320 -20.25271 -18.51012 -16.74705 -16.53469 -15.29567 -15.01304 -14.89017 -14.75589 -14.35727 -13.92487 -13.86354 -13.29125 -13.17340 -13.04884 -12.73981 -12.62461 -12.45561 -12.06698 -11.93421 -11.75941 -11.44146 -11.27532 -11.01476 -10.97968 -10.91147 -10.74935 -10.63208 -10.58489 -10.43214 -10.26827 -10.14717 -10.05147 -9.75005 -9.44239 -9.03572 -8.75131 -8.45279 -8.37606 -6.96695 -5.98767 -3.98769 1.55222 1.57489 3.34453 3.38978 3.41750 3.97275 4.45488 4.97482 4.99929 5.04871 5.13100 5.25038 5.34933 5.37543 5.44031 5.55401 5.60632 5.68264 5.70762 5.79931 5.84780 5.90392 5.95857 6.04208 6.05567 6.10204 6.19372 6.22940 6.24641 6.30147 6.33100 6.43159 6.47489 6.56453 6.63382 6.65668 6.70154 6.77030 6.78983 6.79450 6.87521 6.91582 7.02692 7.21909 7.43288 7.50659 7.85472 8.19092 8.35603 8.66808 9.08988 9.64821 11.11799 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.005122 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.317524 B = 5465.704770 C = 6861.149476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.148 4.148 4 C 0.080 3.920 5 H 0.066 0.934 6 C -0.094 4.094 7 C -0.071 4.071 8 C -0.069 4.069 9 C -0.114 4.114 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.124 4.124 13 C -0.124 4.124 14 N -0.524 5.524 15 C 0.037 3.963 16 C -0.145 4.145 17 C 0.190 3.810 18 C -0.506 4.506 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.898 5.898 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.044 0.956 47 H -0.001 1.001 48 H 0.031 0.969 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 4.191 13.394 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.187 4.187 4 C -0.029 4.029 5 H 0.084 0.916 6 C -0.132 4.132 7 C -0.109 4.109 8 C -0.069 4.069 9 C -0.132 4.132 10 C -0.138 4.138 11 C -0.154 4.154 12 C -0.142 4.142 13 C -0.142 4.142 14 N -0.248 5.248 15 C -0.091 4.091 16 C -0.203 4.203 17 C 0.065 3.935 18 C -0.545 4.545 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.538 5.538 22 Si 0.720 3.280 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.049 0.951 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.643 4.436 13.186 14.381 hybrid contribution -0.425 -0.503 -0.820 1.052 sum 3.218 3.933 12.366 13.369 Atomic orbital electron populations 1.21763 0.96674 1.00847 1.01330 1.21882 0.95200 0.97583 1.02131 1.22275 0.97295 0.96703 1.02412 1.21751 0.91148 0.94765 0.95225 0.91625 1.21474 0.94110 0.96318 1.01335 1.20533 0.96619 0.90712 1.03004 1.20202 0.96754 0.97078 0.92828 1.21234 0.98560 0.94200 0.99171 1.21156 0.99973 0.95583 0.97084 1.21051 1.01675 0.99646 0.93006 1.21068 1.00030 0.94717 0.98411 1.21055 1.00804 0.95407 0.96943 1.62324 1.52643 1.07204 1.02656 1.22330 0.97636 0.90529 0.98619 1.21842 1.00502 0.99619 0.98338 1.19796 0.92082 0.96907 0.84731 1.21192 1.11189 1.31738 0.90376 0.92170 1.24939 0.95165 0.95472 0.98833 1.69940 1.23341 1.39293 1.21208 0.86657 0.80080 0.79404 0.81817 1.20415 1.21483 1.20285 0.92623 0.93413 0.93571 0.89897 0.93035 0.90480 0.93194 0.91514 0.93128 0.92100 0.89117 0.85580 0.86423 0.86726 0.86683 0.86487 0.94434 0.90137 0.92403 0.93854 0.93689 0.98311 0.95067 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.13 -2.12 4.07 -26.73 -0.11 -2.23 16 3 C -0.15 -2.50 4.16 -26.73 -0.11 -2.61 16 4 C 0.08 1.35 1.83 -67.71 -0.12 1.23 16 5 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 6 C -0.09 -1.52 4.78 -26.73 -0.13 -1.65 16 7 C -0.07 -1.08 5.14 -27.89 -0.14 -1.22 16 8 C -0.07 -0.99 5.13 -104.63 -0.54 -1.53 16 9 C -0.11 -1.67 9.70 -39.58 -0.38 -2.06 16 10 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 11 C -0.14 -1.61 10.05 -39.58 -0.40 -2.01 16 12 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 13 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 14 N -0.52 -10.34 3.78 -228.09 -0.86 -11.20 16 15 C 0.04 0.68 5.13 -3.83 -0.02 0.66 16 16 C -0.15 -2.20 9.81 37.16 0.36 -1.83 16 17 C 0.19 4.62 3.26 -4.98 -0.02 4.60 16 18 C -0.51 -13.69 8.45 -34.44 -0.29 -13.98 16 19 H 0.06 1.62 6.79 -52.48 -0.36 1.27 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.57 4.33 -51.93 -0.22 1.35 16 30 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 31 H 0.08 1.53 6.26 -51.93 -0.33 1.20 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.09 1.57 7.76 -51.93 -0.40 1.17 16 37 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.04 0.68 4.12 -51.93 -0.21 0.46 16 43 H 0.08 1.67 6.32 -51.92 -0.33 1.34 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.61 6.47 -51.93 -0.34 0.27 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.00 -0.02 5.05 -51.93 -0.26 -0.28 16 48 H 0.03 0.84 6.87 -51.93 -0.36 0.48 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -28.14 373.23 -10.85 -38.99 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.53 Total: 4.33 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.80 Total: -28.75 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.13 Total: -36.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.14 -10.85 -38.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254494464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.228 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds