Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.52998 * 109.47012 * 173.44848 * 3 2 1 5 5 H 1.08999 * 109.47165 * 302.39479 * 4 3 2 6 6 C 1.53008 * 109.46970 * 182.39983 * 4 3 2 7 7 C 1.52992 * 109.47281 * 177.76709 * 6 4 3 8 8 C 1.50699 * 109.47035 * 185.00086 * 7 6 4 9 9 C 1.38235 * 120.00084 * 269.72524 * 8 7 6 10 10 C 1.38235 * 119.99774 * 179.77023 * 9 8 7 11 11 C 1.38237 * 120.00182 * 0.50489 * 10 9 8 12 12 C 1.38233 * 119.99801 * 359.74930 * 11 10 9 13 13 C 1.38231 * 119.99876 * 90.00386 * 8 7 6 14 14 N 1.46900 * 109.47557 * 62.40293 * 4 3 2 15 15 C 1.46897 * 110.99596 * 273.22862 * 14 4 3 16 16 C 1.52998 * 109.47194 * 292.97441 * 15 14 4 17 17 C 1.46904 * 110.99951 * 37.17936 * 14 4 3 18 18 C 1.50695 * 109.47171 * 172.97007 * 17 14 4 19 19 H 1.08010 * 119.99937 * 4.80784 * 18 17 14 20 20 C 1.37879 * 120.00101 * 184.80661 * 18 17 14 21 21 N 1.31510 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99831 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47089 * 60.00131 * 22 20 18 24 24 H 1.48501 * 109.46930 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47304 * 300.00007 * 22 20 18 26 26 H 1.09001 * 109.47441 * 60.00468 * 1 2 3 27 27 H 1.09001 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47226 * 300.00207 * 1 2 3 29 29 H 1.08993 * 109.47438 * 239.99390 * 2 1 3 30 30 H 1.09001 * 109.47441 * 119.99532 * 2 1 3 31 31 H 1.09006 * 109.46510 * 293.44202 * 3 2 1 32 32 H 1.08992 * 109.47139 * 53.44507 * 3 2 1 33 33 H 1.08999 * 109.47014 * 297.77212 * 6 4 3 34 34 H 1.09001 * 109.47070 * 57.76357 * 6 4 3 35 35 H 1.08997 * 109.47086 * 305.00109 * 7 6 4 36 36 H 1.09003 * 109.47030 * 65.00179 * 7 6 4 37 37 H 1.07993 * 120.00039 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.99875 * 180.23993 * 10 9 8 39 39 H 1.08001 * 119.99958 * 179.72945 * 11 10 9 40 40 H 1.08000 * 119.99752 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.00508 * 0.02562 * 13 8 7 42 42 H 1.08993 * 109.47433 * 52.98336 * 15 14 4 43 43 H 1.09008 * 109.46845 * 172.97905 * 15 14 4 44 44 H 1.09000 * 109.47341 * 305.33215 * 16 15 14 45 45 H 1.09002 * 109.47026 * 65.33329 * 16 15 14 46 46 H 1.08997 * 109.46967 * 185.32918 * 16 15 14 47 47 H 1.08997 * 109.47264 * 292.97484 * 17 14 4 48 48 H 1.08997 * 109.46723 * 52.97283 * 17 14 4 49 49 H 0.97002 * 119.99949 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5611 1.4456 0.1646 5 1 3.8278 0.9292 1.0867 6 6 4.0646 2.8892 0.2246 7 6 5.5786 2.8925 0.4450 8 6 6.0566 4.3101 0.6267 9 6 6.4530 5.0519 -0.4703 10 6 6.8870 6.3537 -0.3041 11 6 6.9345 6.9104 0.9604 12 6 6.5432 6.1668 2.0580 13 6 6.1043 4.8666 1.8911 14 7 4.1787 0.7588 -0.9777 15 6 4.2593 -0.6887 -0.7407 16 6 5.2428 -0.9651 0.3982 17 6 3.4530 1.0490 -2.2216 18 6 4.2096 0.4730 -3.3906 19 1 5.0949 -0.1219 -3.2207 20 6 3.7718 0.7054 -4.6772 21 7 2.6935 1.4293 -4.8842 22 14 4.7101 -0.0081 -6.1263 23 1 4.7364 -1.4889 -6.0183 24 1 4.0389 0.3836 -7.3918 25 1 6.1005 0.5134 -6.1209 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7756 1.9213 -0.9429 32 1 1.5841 1.9891 0.8254 33 1 3.8328 3.3941 -0.7131 34 1 3.5764 3.4103 1.0482 35 1 5.8174 2.3115 1.3357 36 1 6.0726 2.4506 -0.4203 37 1 6.4196 4.6157 -1.4577 38 1 7.1929 6.9346 -1.1617 39 1 7.2778 7.9261 1.0907 40 1 6.5808 6.6016 3.0459 41 1 5.7993 4.2854 2.7489 42 1 3.2739 -1.0680 -0.4701 43 1 4.6038 -1.1866 -1.6471 44 1 6.2032 -0.5035 0.1690 45 1 4.8511 -0.5476 1.3258 46 1 5.3746 -2.0411 0.5113 47 1 2.4600 0.6021 -2.1757 48 1 3.3605 2.1280 -2.3448 49 1 2.3852 1.5925 -5.7893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254494464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -3.515241 kcal Electronic energy + Delta-G solvation = -23884.623998 eV Core-core repulsion = 20810.293273 eV Total energy + Delta-G solvation = -3074.330725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46984 -39.77625 -35.33597 -34.91391 -34.33557 -32.11340 -31.69186 -30.98284 -28.78311 -27.62085 -25.45749 -24.34800 -23.36924 -23.31610 -22.10498 -21.46101 -20.06089 -18.68058 -17.53558 -16.91955 -16.57511 -16.21756 -16.02690 -15.80130 -15.42282 -15.22648 -14.57092 -14.32389 -14.21992 -14.12561 -13.91082 -13.85380 -13.70220 -13.38787 -13.00452 -12.88625 -12.79389 -12.61079 -12.53208 -12.23882 -12.18866 -12.04203 -11.98780 -11.87869 -11.74238 -11.61623 -11.46434 -11.24116 -11.01555 -10.93003 -10.54056 -9.75405 -9.49445 -8.61135 -8.14689 -6.22388 0.54346 0.56636 1.39070 1.41371 1.48864 2.41658 2.95726 3.17092 3.45765 3.78253 4.03583 4.07258 4.14952 4.23970 4.24638 4.30638 4.35771 4.42892 4.52641 4.58238 4.65656 4.69591 4.75306 4.76504 4.78866 4.86320 4.94386 4.95614 4.99968 5.11805 5.13628 5.20833 5.23378 5.24409 5.29476 5.34359 5.38007 5.47275 5.47612 5.52779 5.54698 5.62743 5.65864 5.68547 5.73025 5.90708 6.18211 6.22065 6.57934 6.87955 6.97629 7.46284 8.95186 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.005122 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.317524 B = 5465.704770 C = 6861.149476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C -0.143 4.143 4 C 0.081 3.919 5 H 0.093 0.907 6 C -0.087 4.087 7 C -0.060 4.060 8 C -0.086 4.086 9 C -0.141 4.141 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.122 4.122 13 C -0.127 4.127 14 N -0.527 5.527 15 C 0.034 3.966 16 C -0.134 4.134 17 C 0.214 3.786 18 C -0.519 4.519 19 H 0.057 0.943 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.957 3.043 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.065 0.935 47 H -0.020 1.020 48 H -0.006 1.006 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 4.169 16.325 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.182 4.182 4 C -0.027 4.027 5 H 0.111 0.889 6 C -0.125 4.125 7 C -0.097 4.097 8 C -0.086 4.086 9 C -0.160 4.160 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.140 4.140 13 C -0.145 4.145 14 N -0.251 5.251 15 C -0.093 4.093 16 C -0.191 4.191 17 C 0.088 3.912 18 C -0.557 4.557 19 H 0.076 0.924 20 C -0.194 4.194 21 N -0.574 5.574 22 Si 0.783 3.217 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.084 0.916 47 H -0.002 1.002 48 H 0.012 0.988 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.488 4.404 16.131 17.313 hybrid contribution -0.687 -0.443 -1.677 1.865 sum 3.802 3.961 14.454 15.461 Atomic orbital electron populations 1.21731 0.95367 1.01779 1.01375 1.21802 0.96417 0.96685 1.01463 1.22201 0.97478 0.97316 1.01187 1.21872 0.91072 0.95054 0.94741 0.88944 1.21405 0.95292 0.95667 1.00135 1.20357 0.95331 0.91691 1.02338 1.20189 0.97975 0.96703 0.93745 1.21235 1.00611 0.95577 0.98536 1.21370 0.99853 0.94920 0.98584 1.21431 1.00618 1.00937 0.92303 1.21480 0.98488 0.94165 0.99857 1.21304 1.00418 0.96230 0.96523 1.62221 1.52198 1.08628 1.02077 1.22364 0.99040 0.89111 0.98806 1.21739 0.98957 1.01139 0.97282 1.19308 0.91303 0.94013 0.86606 1.21558 1.11104 1.31442 0.91631 0.92447 1.25777 0.96025 0.95858 1.01704 1.70079 1.24941 1.40689 1.21724 0.85621 0.78740 0.79025 0.78337 1.19357 1.21093 1.19758 0.94744 0.92076 0.91315 0.93254 0.90700 0.94582 0.90633 0.95369 0.90907 0.90127 0.92335 0.87968 0.85206 0.83868 0.83499 0.84378 0.93735 0.93181 0.93078 0.91944 0.91593 1.00232 0.98759 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -4.04 4.07 30.59 0.12 -3.91 16 3 C -0.14 -4.85 4.16 30.59 0.13 -4.72 16 4 C 0.08 2.72 1.83 44.92 0.08 2.80 16 5 H 0.09 2.64 5.95 -2.39 -0.01 2.63 16 6 C -0.09 -2.84 4.78 30.59 0.15 -2.70 16 7 C -0.06 -1.82 5.14 29.85 0.15 -1.67 16 8 C -0.09 -2.49 5.13 -19.87 -0.10 -2.59 16 9 C -0.14 -4.36 9.70 22.27 0.22 -4.14 16 10 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 11 C -0.14 -2.88 10.05 22.27 0.22 -2.65 16 12 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 13 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 14 N -0.53 -21.55 3.78 -875.53 -3.31 -24.86 16 15 C 0.03 1.27 5.13 86.30 0.44 1.72 16 16 C -0.13 -3.76 9.81 71.98 0.71 -3.06 16 17 C 0.21 11.13 3.26 85.55 0.28 11.41 16 18 C -0.52 -29.47 8.45 25.60 0.22 -29.25 16 19 H 0.06 3.22 6.79 -2.91 -0.02 3.20 16 20 C 0.00 0.23 5.46 84.66 0.46 0.69 16 21 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 22 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.92 4.33 -2.39 -0.01 1.91 16 30 H 0.07 2.04 7.86 -2.39 -0.02 2.02 16 31 H 0.04 1.51 6.26 -2.38 -0.01 1.50 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.12 7.18 -2.39 -0.02 1.11 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 36 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 37 H 0.10 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.04 1.59 4.12 -2.39 -0.01 1.58 16 43 H 0.05 2.13 6.32 -2.38 -0.02 2.12 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H -0.02 -1.10 5.05 -2.39 -0.01 -1.11 16 48 H -0.01 -0.33 6.87 -2.39 -0.02 -0.35 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.88 373.23 4.35 -60.53 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.90 Total: 23.31 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 4.45 Total: -49.58 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.02 Total: -81.53 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.88 4.35 -60.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254494464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.014 kcal (2) G-P(sol) polarization free energy of solvation -64.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds