Wall clock time and date at job start Tue Mar 31 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 H 1.08996 * 109.47359 * 185.16615 * 3 2 1 5 5 C 1.50703 * 109.46951 * 305.16532 * 3 2 1 6 6 H 1.08004 * 119.99717 * 119.99717 * 5 3 2 7 7 C 1.37874 * 119.99749 * 299.99837 * 5 3 2 8 8 N 1.31507 * 120.00538 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46911 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47185 * 119.99467 * 9 7 5 12 12 H 1.48498 * 109.47008 * 240.00019 * 9 7 5 13 13 N 1.46896 * 109.46766 * 65.16250 * 3 2 1 14 14 C 1.46903 * 110.99893 * 87.35830 * 13 3 2 15 15 C 1.53001 * 109.47256 * 173.87899 * 14 13 3 16 16 C 1.53005 * 109.47138 * 59.99915 * 15 14 13 17 17 C 1.53005 * 109.47277 * 300.00382 * 15 14 13 18 18 C 1.52991 * 109.47246 * 180.02562 * 15 14 13 19 19 C 1.50703 * 109.47243 * 180.02562 * 18 15 14 20 20 C 1.38236 * 119.99539 * 269.72634 * 19 18 15 21 21 C 1.38245 * 119.99556 * 179.74422 * 20 19 18 22 22 C 1.38234 * 119.99896 * 0.54624 * 21 20 19 23 23 C 1.50699 * 119.99612 * 179.72210 * 22 21 20 24 24 C 1.38230 * 120.00060 * 359.70929 * 22 21 20 25 25 C 1.38231 * 120.00348 * 89.99924 * 19 18 15 26 26 H 1.08997 * 109.46716 * 294.91590 * 1 2 3 27 27 H 1.08997 * 109.47451 * 54.91602 * 1 2 3 28 28 H 1.09002 * 109.47133 * 174.91815 * 1 2 3 29 29 H 1.09003 * 109.46731 * 240.00301 * 2 1 3 30 30 H 1.08998 * 109.47687 * 120.00786 * 2 1 3 31 31 H 0.97004 * 120.00295 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00138 * 323.40570 * 13 3 2 33 33 H 1.09006 * 109.47113 * 53.88122 * 14 13 3 34 34 H 1.08998 * 109.47065 * 293.88105 * 14 13 3 35 35 H 1.08988 * 109.47009 * 179.97438 * 16 15 14 36 36 H 1.09000 * 109.46909 * 300.00461 * 16 15 14 37 37 H 1.09007 * 109.46684 * 59.99935 * 16 15 14 38 38 H 1.09005 * 109.46943 * 300.00226 * 17 15 14 39 39 H 1.09000 * 109.47156 * 59.99302 * 17 15 14 40 40 H 1.08991 * 109.46982 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47373 * 60.00081 * 18 15 14 42 42 H 1.08998 * 109.47352 * 299.99849 * 18 15 14 43 43 H 1.08000 * 120.00403 * 359.97438 * 20 19 18 44 44 H 1.07999 * 119.99455 * 180.27628 * 21 20 19 45 45 H 1.09001 * 109.47427 * 269.97820 * 23 22 21 46 46 H 1.09002 * 109.47025 * 29.98727 * 23 22 21 47 47 H 1.09006 * 109.46507 * 149.98433 * 23 22 21 48 48 H 1.08003 * 120.00208 * 179.97438 * 24 22 21 49 49 H 1.08003 * 119.99980 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4032 0.6922 -2.6676 9 14 0.9128 2.6816 -3.8909 10 1 0.1265 3.8345 -3.3833 11 1 1.9959 3.1735 -4.7797 12 1 0.0208 1.7722 -4.6541 13 7 1.6548 2.0980 1.2569 14 6 2.6607 1.8652 2.3019 15 6 2.3046 2.6845 3.5441 16 6 0.9276 2.2594 4.0579 17 6 2.2779 4.1713 3.1841 18 6 3.3526 2.4425 4.6322 19 6 3.0015 3.2489 5.8559 20 6 3.4915 4.5334 6.0011 21 6 3.1652 5.2751 7.1212 22 6 2.3582 4.7282 8.1012 23 6 2.0077 5.5345 9.3252 24 6 1.8726 3.4419 7.9585 25 6 2.1942 2.7023 6.8358 26 1 -0.3633 0.4329 0.9320 27 1 -0.3634 0.5907 -0.8409 28 1 -0.3633 -1.0236 -0.0910 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.5618 0.3878 -3.5749 32 1 0.7420 1.7923 1.5591 33 1 3.6417 2.1681 1.9358 34 1 2.6797 0.8060 2.5583 35 1 0.6742 2.8426 4.9431 36 1 0.1813 2.4321 3.2825 37 1 0.9466 1.2001 4.3144 38 1 3.2589 4.4742 2.8179 39 1 1.5315 4.3440 2.4086 40 1 2.0238 4.7548 4.0689 41 1 4.3334 2.7457 4.2659 42 1 3.3720 1.3833 4.8888 43 1 4.1262 4.9588 5.2378 44 1 3.5444 6.2801 7.2325 45 1 2.7543 5.3617 10.1003 46 1 1.9881 6.5938 9.0690 47 1 1.0268 5.2311 9.6914 48 1 1.2424 3.0145 8.7244 49 1 1.8147 1.6973 6.7243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:16 Heat of formation + Delta-G solvation = -5.827505 kcal Electronic energy + Delta-G solvation = -23451.773108 eV Core-core repulsion = 20377.342115 eV Total energy + Delta-G solvation = -3074.430993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.85448 -37.72004 -35.62610 -33.07848 -31.74742 -31.00360 -30.06685 -28.32718 -26.89718 -26.51202 -25.45204 -23.72412 -23.01208 -22.62478 -20.78294 -19.25701 -18.42587 -16.17146 -15.96099 -15.51505 -15.20913 -14.95607 -14.67968 -14.37500 -13.91523 -13.77457 -13.46585 -13.28287 -13.18308 -12.69953 -12.58398 -12.41856 -12.34473 -12.00725 -11.82016 -11.62061 -11.42146 -11.27679 -11.19833 -10.93553 -10.86508 -10.77520 -10.48339 -10.46493 -10.31190 -10.18841 -9.87332 -9.62951 -9.50874 -8.90796 -8.89648 -8.41077 -8.30677 -7.09566 -5.93613 -3.94601 1.32940 1.39452 3.33397 3.41656 3.46700 3.72419 4.47550 4.72561 4.74683 4.89005 4.99440 5.06158 5.21029 5.26846 5.37701 5.38153 5.40655 5.47836 5.58399 5.62835 5.65663 5.79483 5.86055 5.97913 6.06150 6.08570 6.15046 6.21014 6.26565 6.37789 6.38900 6.40962 6.41941 6.47724 6.55023 6.57644 6.60843 6.67334 6.79491 6.91568 6.94340 7.02287 7.32698 7.35731 7.55683 7.74752 7.94751 8.35162 8.64040 8.69838 9.11892 9.69074 11.13422 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.003093 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.616432 B = 9051.121260 C = 9381.715103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.681 5.681 14 C 0.072 3.928 15 C -0.052 4.052 16 C -0.143 4.143 17 C -0.130 4.130 18 C -0.075 4.075 19 C -0.068 4.068 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.113 4.113 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.091 0.909 30 H 0.009 0.991 31 H 0.257 0.743 32 H 0.326 0.674 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 5.044 20.566 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.059 4.059 15 C -0.053 4.053 16 C -0.200 4.200 17 C -0.187 4.187 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.099 4.099 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.131 4.131 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.646 5.560 20.221 20.981 hybrid contribution -0.489 -0.653 -0.679 1.061 sum 0.158 4.907 19.542 20.149 Atomic orbital electron populations 1.21592 0.97761 0.98574 1.00728 1.22095 0.94942 1.01261 1.00110 1.19202 0.95787 0.88480 0.85814 0.95200 1.21128 1.30159 1.11326 0.89676 0.92031 1.24917 0.95641 0.95191 0.98727 1.69892 1.39234 1.24137 1.20465 0.86549 0.78949 0.79907 0.82658 1.19773 1.21266 1.21311 1.60792 1.03714 1.62978 1.03724 1.21899 0.97053 0.95482 0.91432 1.20480 0.94232 0.96997 0.93555 1.21929 0.96964 1.00167 1.00940 1.21767 1.02278 0.93900 1.00741 1.20731 0.99319 0.98871 0.92357 1.19871 0.96653 0.94690 0.95549 1.21078 1.00160 0.94098 0.97467 1.20990 0.98950 0.99751 0.94253 1.19848 0.98475 0.94991 0.96636 1.20759 1.01509 0.99301 0.95301 1.20969 1.00798 0.94206 0.98042 1.21046 0.98294 0.99968 0.93756 0.95449 0.91259 0.95883 0.89038 0.97214 0.93269 0.85559 0.91921 0.96790 0.92791 0.92010 0.93551 0.93455 0.90985 0.93824 0.91042 0.91358 0.86072 0.86469 0.91525 0.91759 0.91797 0.86529 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.41 37.16 0.35 -2.42 16 2 C -0.14 -3.39 5.52 -26.73 -0.15 -3.54 16 3 C 0.22 5.27 2.34 -68.86 -0.16 5.11 16 4 H 0.03 0.82 7.66 -51.93 -0.40 0.42 16 5 C -0.48 -13.05 7.25 -34.44 -0.25 -13.30 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -25.41 11.38 55.43 0.63 -24.78 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.02 5.36 -107.95 -0.58 -14.60 16 14 C 0.07 1.26 4.48 -3.82 -0.02 1.24 16 15 C -0.05 -0.75 0.62 -154.51 -0.10 -0.84 16 16 C -0.14 -1.96 7.55 37.16 0.28 -1.67 16 17 C -0.13 -1.92 7.74 37.16 0.29 -1.64 16 18 C -0.07 -0.93 4.46 -27.89 -0.12 -1.06 16 19 C -0.07 -0.80 4.00 -104.62 -0.42 -1.22 16 20 C -0.11 -1.25 7.90 -39.58 -0.31 -1.57 16 21 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 22 C -0.10 -1.01 5.88 -104.63 -0.62 -1.62 16 23 C -0.11 -0.84 10.01 36.01 0.36 -0.47 16 24 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 25 C -0.11 -1.26 7.88 -39.58 -0.31 -1.57 16 26 H 0.03 0.52 6.62 -51.93 -0.34 0.18 16 27 H 0.07 1.63 6.86 -51.93 -0.36 1.27 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.42 6.23 -51.93 -0.32 2.10 16 30 H 0.01 0.20 7.63 -51.93 -0.40 -0.19 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.47 4.93 -39.29 -0.19 6.28 16 33 H 0.06 1.16 7.90 -51.93 -0.41 0.75 16 34 H 0.01 0.25 7.66 -51.93 -0.40 -0.15 16 35 H 0.05 0.70 6.17 -51.94 -0.32 0.38 16 36 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 37 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16 40 H 0.04 0.60 6.19 -51.93 -0.32 0.28 16 41 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 47 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 48 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 49 H 0.12 1.22 8.03 -52.48 -0.42 0.80 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -27.84 372.69 -10.20 -38.04 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.81 Total: 5.77 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -2.04 Total: -26.44 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.05 Total: -39.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.84 -10.20 -38.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.212 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds