Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 H 1.08996 * 109.47359 * 185.16615 * 3 2 1 5 5 C 1.50703 * 109.46951 * 305.16532 * 3 2 1 6 6 H 1.08004 * 119.99717 * 119.99717 * 5 3 2 7 7 C 1.37874 * 119.99749 * 299.99837 * 5 3 2 8 8 N 1.31507 * 120.00538 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46911 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47185 * 119.99467 * 9 7 5 12 12 H 1.48498 * 109.47008 * 240.00019 * 9 7 5 13 13 N 1.46896 * 109.46766 * 65.16250 * 3 2 1 14 14 C 1.46903 * 110.99893 * 87.35830 * 13 3 2 15 15 C 1.53001 * 109.47256 * 173.87899 * 14 13 3 16 16 C 1.53005 * 109.47138 * 59.99915 * 15 14 13 17 17 C 1.53005 * 109.47277 * 300.00382 * 15 14 13 18 18 C 1.52991 * 109.47246 * 180.02562 * 15 14 13 19 19 C 1.50703 * 109.47243 * 180.02562 * 18 15 14 20 20 C 1.38236 * 119.99539 * 269.72634 * 19 18 15 21 21 C 1.38245 * 119.99556 * 179.74422 * 20 19 18 22 22 C 1.38234 * 119.99896 * 0.54624 * 21 20 19 23 23 C 1.50699 * 119.99612 * 179.72210 * 22 21 20 24 24 C 1.38230 * 120.00060 * 359.70929 * 22 21 20 25 25 C 1.38231 * 120.00348 * 89.99924 * 19 18 15 26 26 H 1.08997 * 109.46716 * 294.91590 * 1 2 3 27 27 H 1.08997 * 109.47451 * 54.91602 * 1 2 3 28 28 H 1.09002 * 109.47133 * 174.91815 * 1 2 3 29 29 H 1.09003 * 109.46731 * 240.00301 * 2 1 3 30 30 H 1.08998 * 109.47687 * 120.00786 * 2 1 3 31 31 H 0.97004 * 120.00295 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00138 * 323.40570 * 13 3 2 33 33 H 1.09006 * 109.47113 * 53.88122 * 14 13 3 34 34 H 1.08998 * 109.47065 * 293.88105 * 14 13 3 35 35 H 1.08988 * 109.47009 * 179.97438 * 16 15 14 36 36 H 1.09000 * 109.46909 * 300.00461 * 16 15 14 37 37 H 1.09007 * 109.46684 * 59.99935 * 16 15 14 38 38 H 1.09005 * 109.46943 * 300.00226 * 17 15 14 39 39 H 1.09000 * 109.47156 * 59.99302 * 17 15 14 40 40 H 1.08991 * 109.46982 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47373 * 60.00081 * 18 15 14 42 42 H 1.08998 * 109.47352 * 299.99849 * 18 15 14 43 43 H 1.08000 * 120.00403 * 359.97438 * 20 19 18 44 44 H 1.07999 * 119.99455 * 180.27628 * 21 20 19 45 45 H 1.09001 * 109.47427 * 269.97820 * 23 22 21 46 46 H 1.09002 * 109.47025 * 29.98727 * 23 22 21 47 47 H 1.09006 * 109.46507 * 149.98433 * 23 22 21 48 48 H 1.08003 * 120.00208 * 179.97438 * 24 22 21 49 49 H 1.08003 * 119.99980 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4032 0.6922 -2.6676 9 14 0.9128 2.6816 -3.8909 10 1 0.1265 3.8345 -3.3833 11 1 1.9959 3.1735 -4.7797 12 1 0.0208 1.7722 -4.6541 13 7 1.6548 2.0980 1.2569 14 6 2.6607 1.8652 2.3019 15 6 2.3046 2.6845 3.5441 16 6 0.9276 2.2594 4.0579 17 6 2.2779 4.1713 3.1841 18 6 3.3526 2.4425 4.6322 19 6 3.0015 3.2489 5.8559 20 6 3.4915 4.5334 6.0011 21 6 3.1652 5.2751 7.1212 22 6 2.3582 4.7282 8.1012 23 6 2.0077 5.5345 9.3252 24 6 1.8726 3.4419 7.9585 25 6 2.1942 2.7023 6.8358 26 1 -0.3633 0.4329 0.9320 27 1 -0.3634 0.5907 -0.8409 28 1 -0.3633 -1.0236 -0.0910 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.5618 0.3878 -3.5749 32 1 0.7420 1.7923 1.5591 33 1 3.6417 2.1681 1.9358 34 1 2.6797 0.8060 2.5583 35 1 0.6742 2.8426 4.9431 36 1 0.1813 2.4321 3.2825 37 1 0.9466 1.2001 4.3144 38 1 3.2589 4.4742 2.8179 39 1 1.5315 4.3440 2.4086 40 1 2.0238 4.7548 4.0689 41 1 4.3334 2.7457 4.2659 42 1 3.3720 1.3833 4.8888 43 1 4.1262 4.9588 5.2378 44 1 3.5444 6.2801 7.2325 45 1 2.7543 5.3617 10.1003 46 1 1.9881 6.5938 9.0690 47 1 1.0268 5.2311 9.6914 48 1 1.2424 3.0145 8.7244 49 1 1.8147 1.6973 6.7243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = -18.032693 kcal Electronic energy + Delta-G solvation = -23452.302365 eV Core-core repulsion = 20377.342115 eV Total energy + Delta-G solvation = -3074.960249 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76252 -39.04008 -37.20219 -34.39726 -33.36541 -31.79971 -31.66535 -29.27079 -28.36566 -28.04566 -26.63111 -25.35682 -24.56803 -23.42802 -21.68221 -21.11139 -19.66605 -18.09721 -16.90734 -16.81606 -16.40899 -16.28527 -15.90207 -15.83765 -15.16652 -14.99103 -14.56279 -14.46872 -14.27023 -14.18030 -14.14290 -13.68375 -13.39221 -13.24819 -12.94047 -12.84826 -12.74740 -12.61450 -12.55720 -12.42733 -12.41502 -12.13208 -11.92152 -11.77289 -11.67854 -11.54139 -11.46099 -11.38569 -11.22186 -10.83227 -10.41560 -9.70700 -9.23779 -8.81767 -8.03504 -6.11383 0.51540 0.58879 1.41444 1.44428 1.55494 2.46735 2.90533 3.25141 3.65747 3.89104 3.95885 4.08887 4.12867 4.23089 4.23856 4.34133 4.44044 4.54621 4.60048 4.64160 4.69871 4.72993 4.75451 4.86908 4.89481 4.90003 4.94289 4.98165 4.99374 5.05412 5.11835 5.18217 5.23054 5.28901 5.31409 5.39190 5.43485 5.45242 5.54632 5.61609 5.66500 5.71742 5.76388 5.78892 5.86614 5.88258 6.22836 6.36176 6.74855 6.93477 7.03856 7.56607 9.01949 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.003093 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.616432 B = 9051.121260 C = 9381.715103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.007 1.007 5 C -0.494 4.494 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.681 5.681 14 C 0.074 3.926 15 C -0.043 4.043 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.068 4.068 19 C -0.081 4.081 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.120 4.120 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.135 0.865 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 5.581 22.496 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.011 0.989 5 C -0.533 4.533 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.312 5.312 14 C -0.056 4.056 15 C -0.044 4.044 16 C -0.194 4.194 17 C -0.179 4.179 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.168 4.168 24 C -0.147 4.147 25 C -0.138 4.138 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.153 0.847 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.374 6.104 22.167 22.995 hybrid contribution -0.132 -0.798 -1.201 1.448 sum -0.506 5.306 20.966 21.633 Atomic orbital electron populations 1.21473 0.95922 0.99536 1.00828 1.21943 0.96503 1.00121 0.99181 1.18947 0.93316 0.89356 0.87133 0.98913 1.21328 1.29970 1.11145 0.90839 0.93027 1.25590 0.96054 0.95922 1.01032 1.70021 1.40191 1.25253 1.20858 0.85633 0.78180 0.78858 0.79718 1.19368 1.21175 1.20790 1.60670 1.04682 1.62548 1.03330 1.21923 0.95534 0.96211 0.91887 1.20370 0.95551 0.95851 0.92605 1.21869 0.95794 1.00908 1.00838 1.21679 1.01189 0.94592 1.00474 1.20616 0.98408 0.99488 0.92072 1.19810 0.97783 0.94932 0.95601 1.21204 1.00474 0.94230 0.98077 1.21243 0.99043 1.00490 0.94059 1.20218 0.97670 0.95205 0.97286 1.20806 1.02276 0.99318 0.94374 1.21253 1.00890 0.94363 0.98200 1.21204 0.98180 1.00486 0.93910 0.93282 0.93598 0.94004 0.92181 0.95824 0.93318 0.84847 0.93514 0.96622 0.91726 0.93266 0.92680 0.93961 0.93297 0.92483 0.91246 0.90774 0.86018 0.84946 0.90525 0.91042 0.90880 0.84677 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.41 71.98 0.68 -4.36 16 2 C -0.14 -6.50 5.52 30.60 0.17 -6.33 16 3 C 0.22 11.09 2.34 44.17 0.10 11.19 16 4 H -0.01 -0.40 7.66 -2.39 -0.02 -0.42 16 5 C -0.49 -27.08 7.25 25.60 0.19 -26.89 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.65 5.28 84.66 0.45 1.10 16 8 N -0.92 -53.25 11.38 21.44 0.24 -53.01 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.68 -28.24 5.36 -495.44 -2.65 -30.90 16 14 C 0.07 2.62 4.48 86.30 0.39 3.01 16 15 C -0.04 -1.21 0.62 -52.18 -0.03 -1.24 16 16 C -0.14 -3.53 7.55 71.98 0.54 -2.99 16 17 C -0.12 -3.59 7.74 71.98 0.56 -3.03 16 18 C -0.07 -1.62 4.46 29.85 0.13 -1.49 16 19 C -0.08 -1.81 4.00 -19.87 -0.08 -1.89 16 20 C -0.12 -2.62 7.90 22.27 0.18 -2.45 16 21 C -0.13 -2.50 9.70 22.27 0.22 -2.28 16 22 C -0.10 -1.85 5.88 -19.87 -0.12 -1.97 16 23 C -0.11 -1.35 10.01 71.24 0.71 -0.63 16 24 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 25 C -0.12 -2.43 7.88 22.27 0.18 -2.26 16 26 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 27 H 0.04 2.13 6.86 -2.39 -0.02 2.11 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 3.23 6.23 -2.39 -0.01 3.22 16 30 H 0.02 1.02 7.63 -2.39 -0.02 1.00 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.33 13.01 4.93 -89.70 -0.44 12.57 16 33 H 0.05 1.78 7.90 -2.38 -0.02 1.77 16 34 H 0.02 0.55 7.66 -2.39 -0.02 0.53 16 35 H 0.06 1.54 6.17 -2.39 -0.01 1.53 16 36 H 0.05 1.39 6.72 -2.39 -0.02 1.37 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.05 1.65 7.60 -2.39 -0.02 1.64 16 40 H 0.06 1.51 6.19 -2.39 -0.01 1.50 16 41 H 0.07 1.66 8.08 -2.39 -0.02 1.65 16 42 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 43 H 0.12 2.51 8.04 -2.91 -0.02 2.48 16 44 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 47 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 48 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.13 2.31 8.03 -2.91 -0.02 2.29 16 Total: -1.00 -59.83 372.69 4.54 -55.29 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.45 Total: 26.96 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 4.47 Total: -44.65 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.41 Total: -83.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.83 4.54 -55.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.259 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds