Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46897 * 2 1 4 4 H 1.09001 * 109.47598 * 55.44773 * 3 2 1 5 5 C 1.50699 * 109.47493 * 175.45130 * 3 2 1 6 6 H 1.07999 * 120.00228 * 119.98935 * 5 3 2 7 7 C 1.37882 * 119.99580 * 300.00056 * 5 3 2 8 8 N 1.31510 * 120.00406 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99723 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47223 * 59.99557 * 9 7 5 11 11 H 1.48500 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47319 * 299.99375 * 9 7 5 13 13 N 1.46903 * 109.46660 * 295.44684 * 3 2 1 14 14 C 1.46899 * 111.00133 * 154.03090 * 13 3 2 15 15 C 1.52995 * 109.47461 * 185.32963 * 14 13 3 16 16 C 1.53009 * 109.46685 * 299.99540 * 15 14 13 17 17 C 1.52997 * 109.47530 * 59.99539 * 15 14 13 18 18 C 1.53000 * 109.47427 * 180.02562 * 15 14 13 19 19 C 1.50695 * 109.47500 * 181.90750 * 18 15 14 20 20 C 1.38266 * 119.99713 * 87.49246 * 19 18 15 21 21 C 1.38214 * 119.99631 * 179.97438 * 20 19 18 22 22 C 1.38256 * 120.00132 * 0.02562 * 21 20 19 23 23 C 1.38215 * 120.00320 * 359.97438 * 22 21 20 24 24 C 1.38207 * 120.00295 * 267.22680 * 19 18 15 25 25 C 1.50703 * 119.99851 * 359.97438 * 24 19 18 26 26 H 1.08989 * 109.47428 * 305.09983 * 1 2 3 27 27 H 1.08995 * 109.47212 * 65.11245 * 1 2 3 28 28 H 1.09002 * 109.46836 * 185.10519 * 1 2 3 29 29 H 1.08996 * 109.47967 * 239.99308 * 2 1 3 30 30 H 1.09002 * 109.47035 * 119.99115 * 2 1 3 31 31 H 0.96993 * 120.00120 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00051 * 277.97950 * 13 3 2 33 33 H 1.09005 * 109.46907 * 305.32473 * 14 13 3 34 34 H 1.09002 * 109.47291 * 65.31838 * 14 13 3 35 35 H 1.09002 * 109.47082 * 56.78381 * 16 15 14 36 36 H 1.08999 * 109.46838 * 176.78095 * 16 15 14 37 37 H 1.09001 * 109.47193 * 296.78066 * 16 15 14 38 38 H 1.08997 * 109.46977 * 66.42673 * 17 15 14 39 39 H 1.09002 * 109.47023 * 186.42747 * 17 15 14 40 40 H 1.08997 * 109.47126 * 306.42753 * 17 15 14 41 41 H 1.09003 * 109.46769 * 301.90525 * 18 15 14 42 42 H 1.08996 * 109.47267 * 61.90329 * 18 15 14 43 43 H 1.07993 * 119.99875 * 0.02562 * 20 19 18 44 44 H 1.07997 * 119.99869 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.99841 * 179.97438 * 22 21 20 46 46 H 1.07997 * 120.00080 * 179.97438 * 23 22 21 47 47 H 1.08996 * 109.46840 * 88.87647 * 25 24 19 48 48 H 1.09001 * 109.47340 * 208.87924 * 25 24 19 49 49 H 1.08993 * 109.47079 * 328.87674 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6116 1.9794 0.8464 5 6 3.5427 1.4442 0.1127 6 1 4.1422 1.8907 -0.6668 7 6 4.1522 0.8754 1.2109 8 7 3.4223 0.3319 2.1602 9 14 6.0151 0.8768 1.3503 10 1 6.5105 2.2767 1.3498 11 1 6.4173 0.2102 2.6148 12 1 6.5983 0.1449 0.1973 13 7 1.6420 2.1024 -1.2507 14 6 1.5420 3.5568 -1.0698 15 6 0.9992 4.1939 -2.3505 16 6 1.9461 3.8885 -3.5130 17 6 -0.3861 3.6217 -2.6574 18 6 0.8957 5.7088 -2.1624 19 6 0.3172 6.3312 -3.4069 20 6 -1.0535 6.4386 -3.5531 21 6 -1.5840 7.0100 -4.6943 22 6 -0.7442 7.4737 -5.6898 23 6 0.6260 7.3664 -5.5437 24 6 1.1568 6.7998 -4.3997 25 6 2.6510 6.6887 -4.2374 26 1 -0.3634 0.5908 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3633 -1.0236 0.0914 29 1 1.8935 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 3.8511 -0.0679 2.9330 32 1 2.2795 1.8741 -1.9987 33 1 0.8675 3.7744 -0.2417 34 1 2.5290 3.9645 -0.8512 35 1 2.0651 2.8094 -3.6108 36 1 1.5308 4.2933 -4.4359 37 1 2.9170 4.3451 -3.3204 38 1 -1.0882 3.9362 -1.8852 39 1 -0.7240 3.9882 -3.6268 40 1 -0.3331 2.5333 -2.6788 41 1 0.2482 5.9259 -1.3129 42 1 1.8878 6.1206 -1.9777 43 1 -1.7094 6.0768 -2.7752 44 1 -2.6547 7.0935 -4.8087 45 1 -1.1588 7.9198 -6.5817 46 1 1.2820 7.7282 -6.3216 47 1 2.9890 5.7306 -4.6322 48 1 3.1369 7.4981 -4.7824 49 1 2.9077 6.7570 -3.1804 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -4.108862 kcal Electronic energy + Delta-G solvation = -23895.622157 eV Core-core repulsion = 20821.265691 eV Total energy + Delta-G solvation = -3074.356467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01247 -37.46196 -35.28751 -32.94057 -32.17170 -31.33324 -30.09431 -27.64772 -26.80625 -26.53947 -26.03763 -24.10950 -22.47392 -21.88083 -20.66507 -19.46150 -18.15788 -16.65437 -16.33839 -15.61621 -15.12388 -15.04489 -14.58897 -14.24988 -13.98362 -13.56669 -13.19727 -13.17015 -12.93531 -12.70181 -12.67319 -12.31126 -12.11818 -12.00061 -11.75138 -11.38885 -11.23453 -11.18263 -11.14323 -11.03244 -10.89500 -10.79839 -10.66298 -10.39964 -10.24231 -10.13992 -10.00551 -9.55792 -9.34845 -9.02061 -8.72847 -8.46341 -8.35750 -7.16325 -5.97505 -4.10635 1.38670 1.41236 3.28155 3.33604 3.35763 3.77130 4.40274 4.78428 4.82014 4.96160 5.00895 5.17181 5.22539 5.28504 5.32079 5.41266 5.50658 5.61175 5.65394 5.71673 5.80371 5.88809 5.92458 6.05683 6.12700 6.14441 6.19776 6.26607 6.36051 6.42108 6.47046 6.49852 6.52155 6.53437 6.56327 6.70500 6.71842 6.74547 6.84770 6.92279 7.06032 7.18251 7.20640 7.48535 7.63033 7.80088 8.12850 8.19686 8.38199 8.72072 9.03257 9.56879 11.02190 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003833 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.253407 B = 7302.577304 C = 8196.126163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.079 3.921 15 C -0.051 4.051 16 C -0.144 4.144 17 C -0.130 4.130 18 C -0.079 4.079 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.081 4.081 25 C -0.125 4.125 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 12.181 -12.589 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.315 5.315 14 C -0.052 4.052 15 C -0.052 4.052 16 C -0.201 4.201 17 C -0.187 4.187 18 C -0.117 4.117 19 C -0.063 4.063 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.081 4.081 25 C -0.181 4.181 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.588 11.964 -12.285 18.752 hybrid contribution 1.980 0.266 0.207 2.008 sum -5.608 12.230 -12.078 18.080 Atomic orbital electron populations 1.21677 0.99042 0.98147 1.00335 1.21486 0.92029 0.99352 1.01525 1.19120 0.92550 0.91108 0.86436 0.95215 1.21844 0.92851 1.38007 1.05634 0.93015 1.24927 0.97809 0.95048 0.95714 1.69865 1.34884 1.38147 1.09468 0.86743 0.86256 0.78139 0.77341 1.20451 1.21266 1.20316 1.60895 1.54880 1.06055 1.09659 1.21748 0.98374 0.90266 0.94781 1.20495 0.96354 0.92126 0.96175 1.22070 0.98612 1.01892 0.97507 1.21793 0.94988 1.02401 0.99531 1.20805 1.01130 0.95425 0.94303 1.19751 0.93135 0.97321 0.96130 1.21072 0.94695 0.99113 0.97963 1.21075 0.99442 0.99663 0.94457 1.21035 0.93626 1.00989 0.98998 1.20975 0.95140 1.00651 0.97360 1.19759 0.95907 0.98358 0.94068 1.21104 0.91514 1.02512 1.02951 0.94543 0.93461 0.95823 0.95219 0.89326 0.92877 0.85670 0.92384 0.95705 0.92137 0.93052 0.92961 0.93741 0.93899 0.90982 0.91208 0.90811 0.86145 0.86547 0.86649 0.86565 0.90293 0.92276 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.24 1.98 -68.86 -0.14 5.11 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.54 -14.50 8.48 -34.44 -0.29 -14.79 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.95 11.30 55.43 0.63 -24.32 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -13.77 4.80 -107.95 -0.52 -14.29 16 14 C 0.08 1.41 4.47 -3.83 -0.02 1.39 16 15 C -0.05 -0.73 0.62 -154.51 -0.10 -0.83 16 16 C -0.14 -1.99 6.37 37.16 0.24 -1.75 16 17 C -0.13 -1.85 7.37 37.16 0.27 -1.58 16 18 C -0.08 -1.01 4.21 -27.89 -0.12 -1.13 16 19 C -0.06 -0.77 4.01 -104.63 -0.42 -1.19 16 20 C -0.11 -1.28 7.88 -39.58 -0.31 -1.59 16 21 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 22 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 24 C -0.08 -0.94 4.88 -104.62 -0.51 -1.45 16 25 C -0.12 -1.30 8.24 36.01 0.30 -1.00 16 26 H 0.04 0.75 8.14 -51.94 -0.42 0.33 16 27 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.37 5.96 -51.93 -0.31 2.06 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.33 6.58 6.60 -39.29 -0.26 6.32 16 33 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 36 H 0.05 0.67 6.08 -51.93 -0.32 0.36 16 37 H 0.05 0.70 6.67 -51.93 -0.35 0.36 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 40 H 0.07 1.14 7.41 -51.93 -0.38 0.76 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.07 0.93 5.86 -51.93 -0.30 0.63 16 43 H 0.12 1.30 7.88 -52.49 -0.41 0.89 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.08 0.83 5.79 -51.93 -0.30 0.53 16 48 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 49 H 0.07 0.77 5.96 -51.93 -0.31 0.46 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -27.32 367.56 -10.13 -37.45 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.60 Total: 6.88 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -2.15 Total: -27.29 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.11 Total: -38.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.32 -10.13 -37.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.343 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds