Wall clock time and date at job start Tue Mar 31 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46897 * 2 1 4 4 H 1.09001 * 109.47598 * 55.44773 * 3 2 1 5 5 C 1.50699 * 109.47493 * 175.45130 * 3 2 1 6 6 H 1.07999 * 120.00228 * 119.98935 * 5 3 2 7 7 C 1.37882 * 119.99580 * 300.00056 * 5 3 2 8 8 N 1.31510 * 120.00406 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99723 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47223 * 59.99557 * 9 7 5 11 11 H 1.48500 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47319 * 299.99375 * 9 7 5 13 13 N 1.46903 * 109.46660 * 295.44684 * 3 2 1 14 14 C 1.46899 * 111.00133 * 154.03090 * 13 3 2 15 15 C 1.52995 * 109.47461 * 185.32963 * 14 13 3 16 16 C 1.53009 * 109.46685 * 299.99540 * 15 14 13 17 17 C 1.52997 * 109.47530 * 59.99539 * 15 14 13 18 18 C 1.53000 * 109.47427 * 180.02562 * 15 14 13 19 19 C 1.50695 * 109.47500 * 181.90750 * 18 15 14 20 20 C 1.38266 * 119.99713 * 87.49246 * 19 18 15 21 21 C 1.38214 * 119.99631 * 179.97438 * 20 19 18 22 22 C 1.38256 * 120.00132 * 0.02562 * 21 20 19 23 23 C 1.38215 * 120.00320 * 359.97438 * 22 21 20 24 24 C 1.38207 * 120.00295 * 267.22680 * 19 18 15 25 25 C 1.50703 * 119.99851 * 359.97438 * 24 19 18 26 26 H 1.08989 * 109.47428 * 305.09983 * 1 2 3 27 27 H 1.08995 * 109.47212 * 65.11245 * 1 2 3 28 28 H 1.09002 * 109.46836 * 185.10519 * 1 2 3 29 29 H 1.08996 * 109.47967 * 239.99308 * 2 1 3 30 30 H 1.09002 * 109.47035 * 119.99115 * 2 1 3 31 31 H 0.96993 * 120.00120 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00051 * 277.97950 * 13 3 2 33 33 H 1.09005 * 109.46907 * 305.32473 * 14 13 3 34 34 H 1.09002 * 109.47291 * 65.31838 * 14 13 3 35 35 H 1.09002 * 109.47082 * 56.78381 * 16 15 14 36 36 H 1.08999 * 109.46838 * 176.78095 * 16 15 14 37 37 H 1.09001 * 109.47193 * 296.78066 * 16 15 14 38 38 H 1.08997 * 109.46977 * 66.42673 * 17 15 14 39 39 H 1.09002 * 109.47023 * 186.42747 * 17 15 14 40 40 H 1.08997 * 109.47126 * 306.42753 * 17 15 14 41 41 H 1.09003 * 109.46769 * 301.90525 * 18 15 14 42 42 H 1.08996 * 109.47267 * 61.90329 * 18 15 14 43 43 H 1.07993 * 119.99875 * 0.02562 * 20 19 18 44 44 H 1.07997 * 119.99869 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.99841 * 179.97438 * 22 21 20 46 46 H 1.07997 * 120.00080 * 179.97438 * 23 22 21 47 47 H 1.08996 * 109.46840 * 88.87647 * 25 24 19 48 48 H 1.09001 * 109.47340 * 208.87924 * 25 24 19 49 49 H 1.08993 * 109.47079 * 328.87674 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6116 1.9794 0.8464 5 6 3.5427 1.4442 0.1127 6 1 4.1422 1.8907 -0.6668 7 6 4.1522 0.8754 1.2109 8 7 3.4223 0.3319 2.1602 9 14 6.0151 0.8768 1.3503 10 1 6.5105 2.2767 1.3498 11 1 6.4173 0.2102 2.6148 12 1 6.5983 0.1449 0.1973 13 7 1.6420 2.1024 -1.2507 14 6 1.5420 3.5568 -1.0698 15 6 0.9992 4.1939 -2.3505 16 6 1.9461 3.8885 -3.5130 17 6 -0.3861 3.6217 -2.6574 18 6 0.8957 5.7088 -2.1624 19 6 0.3172 6.3312 -3.4069 20 6 -1.0535 6.4386 -3.5531 21 6 -1.5840 7.0100 -4.6943 22 6 -0.7442 7.4737 -5.6898 23 6 0.6260 7.3664 -5.5437 24 6 1.1568 6.7998 -4.3997 25 6 2.6510 6.6887 -4.2374 26 1 -0.3634 0.5908 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3633 -1.0236 0.0914 29 1 1.8935 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 3.8511 -0.0679 2.9330 32 1 2.2795 1.8741 -1.9987 33 1 0.8675 3.7744 -0.2417 34 1 2.5290 3.9645 -0.8512 35 1 2.0651 2.8094 -3.6108 36 1 1.5308 4.2933 -4.4359 37 1 2.9170 4.3451 -3.3204 38 1 -1.0882 3.9362 -1.8852 39 1 -0.7240 3.9882 -3.6268 40 1 -0.3331 2.5333 -2.6788 41 1 0.2482 5.9259 -1.3129 42 1 1.8878 6.1206 -1.9777 43 1 -1.7094 6.0768 -2.7752 44 1 -2.6547 7.0935 -4.8087 45 1 -1.1588 7.9198 -6.5817 46 1 1.2820 7.7282 -6.3216 47 1 2.9890 5.7306 -4.6322 48 1 3.1369 7.4981 -4.7824 49 1 2.9077 6.7570 -3.1804 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:22 Heat of formation + Delta-G solvation = -15.836643 kcal Electronic energy + Delta-G solvation = -23896.130712 eV Core-core repulsion = 20821.265691 eV Total energy + Delta-G solvation = -3074.865021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94747 -38.79529 -36.91711 -34.19656 -33.59443 -32.78745 -31.45621 -28.58924 -28.40767 -27.91269 -27.03373 -25.71550 -24.18439 -22.77088 -21.60860 -21.36716 -19.38176 -18.66718 -17.17687 -16.85100 -16.51074 -16.15370 -16.04082 -15.59610 -15.38311 -14.97934 -14.70743 -14.24423 -14.14751 -13.96411 -13.64836 -13.59880 -13.35284 -13.15011 -13.05677 -12.97488 -12.94419 -12.76986 -12.55401 -12.41905 -12.22810 -12.06631 -12.00514 -11.75740 -11.66631 -11.50260 -11.47312 -11.27652 -11.07118 -10.86130 -10.44205 -9.55968 -9.32929 -8.95505 -8.03050 -6.25981 0.55591 0.58372 1.39097 1.39653 1.47083 2.40650 2.93358 3.15677 3.66764 3.92157 3.98110 4.10272 4.17458 4.21546 4.29698 4.34532 4.47985 4.57361 4.62745 4.70993 4.78115 4.78366 4.83238 4.88472 4.95372 4.98208 5.00767 5.01195 5.02625 5.08111 5.19338 5.21085 5.22511 5.31096 5.40623 5.43635 5.44899 5.53495 5.58129 5.66128 5.67260 5.70680 5.72688 5.80810 5.91644 6.14238 6.23878 6.24583 6.43395 6.87642 7.06779 7.45669 8.92382 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003833 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.253407 B = 7302.577304 C = 8196.126163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.083 3.917 15 C -0.040 4.040 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.092 4.092 25 C -0.124 4.124 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.045 0.955 34 H 0.007 0.993 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.135 0.865 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 13.185 -14.496 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.013 0.987 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.047 4.047 15 C -0.041 4.041 16 C -0.194 4.194 17 C -0.179 4.179 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.140 4.140 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.092 4.092 25 C -0.180 4.180 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.152 0.848 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.819 12.976 -14.207 20.769 hybrid contribution 2.013 0.006 0.776 2.158 sum -5.806 12.982 -13.431 19.561 Atomic orbital electron populations 1.21530 0.96446 0.99364 1.00592 1.21342 0.94327 0.98467 0.99849 1.18895 0.91346 0.91427 0.86932 0.98670 1.22164 0.94180 1.37789 1.05640 0.93258 1.25658 1.02004 0.94836 0.95510 1.70000 1.36453 1.38745 1.09844 0.85770 0.81231 0.78178 0.77386 1.20061 1.20999 1.19694 1.60831 1.54252 1.07233 1.07819 1.21756 0.97329 0.89010 0.96628 1.20360 0.96416 0.93081 0.94223 1.22007 0.98627 1.01129 0.97628 1.21698 0.94774 1.01170 1.00211 1.20691 1.01252 0.94082 0.95070 1.19691 0.93635 0.98499 0.95965 1.21210 0.94537 0.99561 0.98661 1.21357 1.00677 0.99093 0.94047 1.21379 0.93514 1.00233 0.99638 1.21259 0.95844 1.00277 0.97435 1.19934 0.96309 0.98566 0.94349 1.21097 0.91178 1.03017 1.02712 0.95276 0.92299 0.93917 0.95418 0.92319 0.92958 0.85420 0.93601 0.97504 0.93243 0.91938 0.92772 0.93602 0.92754 0.92604 0.91413 0.90907 0.85902 0.84625 0.84312 0.84758 0.90466 0.90777 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.73 71.98 0.70 -4.26 16 2 C -0.10 -4.89 5.45 30.59 0.17 -4.72 16 3 C 0.22 11.11 1.98 44.17 0.09 11.20 16 4 H 0.00 -0.26 7.70 -2.39 -0.02 -0.28 16 5 C -0.56 -30.27 8.48 25.60 0.22 -30.06 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.61 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -52.41 11.30 21.45 0.24 -52.17 16 9 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -27.39 4.80 -495.45 -2.38 -29.76 16 14 C 0.08 3.04 4.47 86.30 0.39 3.42 16 15 C -0.04 -1.14 0.62 -52.18 -0.03 -1.17 16 16 C -0.14 -3.67 6.37 71.99 0.46 -3.21 16 17 C -0.12 -3.35 7.37 71.98 0.53 -2.82 16 18 C -0.07 -1.85 4.21 29.85 0.13 -1.72 16 19 C -0.08 -1.80 4.01 -19.87 -0.08 -1.88 16 20 C -0.12 -2.62 7.88 22.27 0.18 -2.45 16 21 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 24 C -0.09 -1.96 4.88 -19.87 -0.10 -2.06 16 25 C -0.12 -2.39 8.24 71.24 0.59 -1.81 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 3.21 5.96 -2.39 -0.01 3.19 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 13.31 6.60 -89.69 -0.59 12.72 16 33 H 0.05 1.78 7.92 -2.38 -0.02 1.76 16 34 H 0.01 0.27 8.12 -2.39 -0.02 0.25 16 35 H 0.05 1.43 6.54 -2.39 -0.02 1.41 16 36 H 0.06 1.55 6.08 -2.39 -0.01 1.53 16 37 H 0.05 1.42 6.67 -2.39 -0.02 1.40 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.38 6.52 -2.39 -0.02 1.36 16 40 H 0.05 1.72 7.41 -2.39 -0.02 1.71 16 41 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.07 1.83 5.86 -2.39 -0.01 1.82 16 43 H 0.12 2.50 7.88 -2.91 -0.02 2.47 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.08 1.50 5.79 -2.39 -0.01 1.49 16 48 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 49 H 0.06 1.34 5.96 -2.39 -0.01 1.32 16 Total: -1.00 -58.53 367.56 4.54 -53.99 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.31 Total: 29.02 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 4.34 Total: -46.56 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.13 Total: -81.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -58.53 4.54 -53.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.153 kcal (2) G-P(sol) polarization free energy of solvation -58.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds