Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46698 * 2 1 4 4 H 1.09005 * 109.46727 * 175.07224 * 3 2 1 5 5 C 1.50702 * 109.47558 * 55.06967 * 3 2 1 6 6 H 1.07997 * 120.00135 * 245.73854 * 5 3 2 7 7 C 1.37885 * 119.99593 * 65.73383 * 5 3 2 8 8 N 1.31511 * 120.00009 * 5.53397 * 7 5 3 9 9 Si 1.86798 * 119.99809 * 185.52775 * 7 5 3 10 10 H 1.48496 * 109.47216 * 270.00365 * 9 7 5 11 11 H 1.48505 * 109.46821 * 30.00538 * 9 7 5 12 12 H 1.48494 * 109.47105 * 150.00029 * 9 7 5 13 13 N 1.46897 * 109.47205 * 295.06597 * 3 2 1 14 14 C 1.46899 * 111.00450 * 279.82122 * 13 3 2 15 15 C 1.52998 * 109.47196 * 185.11368 * 14 13 3 16 16 C 1.53003 * 109.47020 * 299.99646 * 15 14 13 17 17 C 1.52994 * 109.47420 * 59.99735 * 15 14 13 18 18 C 1.52997 * 109.47056 * 180.02562 * 15 14 13 19 19 C 1.50699 * 109.47252 * 176.47349 * 18 15 14 20 20 C 1.38258 * 120.00138 * 88.49592 * 19 18 15 21 21 C 1.38215 * 120.00395 * 180.02562 * 20 19 18 22 22 C 1.38259 * 119.99844 * 359.97438 * 21 20 19 23 23 C 1.38214 * 119.99704 * 359.97395 * 22 21 20 24 24 C 1.38221 * 120.00291 * 268.22260 * 19 18 15 25 25 C 1.50695 * 119.99424 * 0.02562 * 24 19 18 26 26 H 1.08994 * 109.47449 * 305.01068 * 1 2 3 27 27 H 1.09002 * 109.47484 * 65.01222 * 1 2 3 28 28 H 1.09000 * 109.47123 * 185.00868 * 1 2 3 29 29 H 1.09003 * 109.47049 * 240.00218 * 2 1 3 30 30 H 1.08994 * 109.47148 * 119.99679 * 2 1 3 31 31 H 0.97004 * 120.00035 * 355.14931 * 8 7 5 32 32 H 1.00901 * 110.99733 * 43.78024 * 13 3 2 33 33 H 1.08993 * 109.46959 * 305.11104 * 14 13 3 34 34 H 1.09002 * 109.46961 * 65.11297 * 14 13 3 35 35 H 1.08999 * 109.47358 * 60.24898 * 16 15 14 36 36 H 1.08997 * 109.47494 * 180.24824 * 16 15 14 37 37 H 1.09006 * 109.47330 * 300.25084 * 16 15 14 38 38 H 1.08996 * 109.47280 * 65.06603 * 17 15 14 39 39 H 1.09001 * 109.47492 * 185.06261 * 17 15 14 40 40 H 1.08994 * 109.47542 * 305.06018 * 17 15 14 41 41 H 1.08998 * 109.47453 * 296.47192 * 18 15 14 42 42 H 1.08997 * 109.47600 * 56.47726 * 18 15 14 43 43 H 1.08001 * 119.99830 * 359.97438 * 20 19 18 44 44 H 1.07996 * 120.00236 * 179.97438 * 21 20 19 45 45 H 1.07994 * 119.99890 * 179.97438 * 22 21 20 46 46 H 1.08006 * 119.99784 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47363 * 88.78524 * 25 24 19 48 48 H 1.09008 * 109.46948 * 208.78317 * 25 24 19 49 49 H 1.08993 * 109.47833 * 328.77917 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1264 1.4438 0.0883 5 6 1.4403 2.1874 1.1648 6 1 0.7563 3.0044 0.9890 7 6 1.7651 1.8256 2.4552 8 7 2.6791 0.9048 2.6696 9 14 0.9067 2.6436 3.8985 10 1 1.6694 3.8498 4.3092 11 1 -0.4673 3.0395 3.4976 12 1 0.8355 1.6919 5.0362 13 7 1.6499 2.0998 -1.2545 14 6 2.5595 1.7305 -2.3473 15 6 2.2005 2.5295 -3.6017 16 6 0.7594 2.2173 -4.0102 17 6 2.3351 4.0253 -3.3095 18 6 3.1475 2.1445 -4.7400 19 6 2.7400 2.8665 -5.9984 20 6 3.2489 4.1230 -6.2701 21 6 2.8748 4.7856 -7.4240 22 6 1.9921 4.1915 -8.3069 23 6 1.4843 2.9350 -8.0359 24 6 1.8620 2.2703 -6.8839 25 6 1.3117 0.8985 -6.5905 26 1 -0.3634 0.5896 0.8416 27 1 -0.3634 0.4341 -0.9315 28 1 -0.3633 -1.0237 0.0897 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0743 0.4302 1.9216 32 1 0.6930 1.8857 -1.4925 33 1 3.5860 1.9529 -2.0563 34 1 2.4635 0.6648 -2.5555 35 1 0.0840 2.4954 -3.2011 36 1 0.5051 2.7832 -4.9064 37 1 0.6624 1.1509 -4.2141 38 1 3.3791 4.2633 -3.1063 39 1 1.9938 4.5964 -4.1730 40 1 1.7282 4.2820 -2.4413 41 1 4.1671 2.4239 -4.4748 42 1 3.0972 1.0684 -4.9062 43 1 3.9381 4.5872 -5.5802 44 1 3.2720 5.7672 -7.6360 45 1 1.6995 4.7094 -9.2083 46 1 0.7944 2.4711 -8.7254 47 1 0.3989 0.9913 -6.0020 48 1 1.0894 0.3881 -7.5278 49 1 2.0486 0.3236 -6.0298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -2.087871 kcal Electronic energy + Delta-G solvation = -23964.359084 eV Core-core repulsion = 20890.090254 eV Total energy + Delta-G solvation = -3074.268830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.11370 -37.73692 -35.78918 -33.05312 -32.31053 -31.19893 -29.89080 -27.75695 -26.84488 -26.29634 -26.04910 -23.88966 -23.48990 -22.00396 -20.83991 -19.45904 -18.37035 -16.78807 -16.42037 -15.69833 -15.22529 -15.04702 -14.77698 -14.12037 -13.83684 -13.63889 -13.46443 -13.22831 -13.13456 -12.90077 -12.74073 -12.52156 -12.37647 -12.10870 -11.92432 -11.63144 -11.41109 -11.30019 -11.11064 -11.06782 -10.91541 -10.73695 -10.49617 -10.40485 -10.27710 -10.10470 -10.00233 -9.95640 -9.79744 -8.79733 -8.60709 -8.51453 -8.18834 -7.22478 -6.25955 -3.95298 1.32159 1.35196 3.47248 3.50088 3.65772 3.70694 4.56041 4.69839 4.75132 4.89204 4.93960 5.07171 5.13221 5.22423 5.30466 5.41047 5.43296 5.51071 5.51287 5.63751 5.71882 5.74991 5.80987 5.94660 6.01972 6.05071 6.08697 6.10400 6.15982 6.18420 6.18792 6.31709 6.35545 6.38663 6.43669 6.46558 6.51695 6.63687 6.70001 6.73926 6.86578 6.99423 7.03216 7.10691 7.27091 7.33564 7.98929 8.33007 8.53910 8.69444 8.97915 9.73274 11.10306 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.003467 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.438412 B = 8073.991134 C = 8480.866544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C 0.204 3.796 4 H 0.025 0.975 5 C -0.568 4.568 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.069 3.931 15 C -0.050 4.050 16 C -0.146 4.146 17 C -0.131 4.131 18 C -0.078 4.078 19 C -0.065 4.065 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.081 4.081 25 C -0.125 4.125 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.269 0.731 32 H 0.328 0.672 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 2.601 -20.260 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.192 4.192 3 C 0.095 3.905 4 H 0.042 0.958 5 C -0.607 4.607 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.061 4.061 15 C -0.050 4.050 16 C -0.203 4.203 17 C -0.189 4.189 18 C -0.116 4.116 19 C -0.065 4.065 20 C -0.129 4.129 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.081 4.081 25 C -0.181 4.181 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.265 3.265 -18.441 18.771 hybrid contribution -0.155 -1.013 -1.938 2.193 sum -1.420 2.251 -20.380 20.553 Atomic orbital electron populations 1.21584 0.96855 0.99007 1.01331 1.22256 0.96091 1.01617 0.99273 1.19322 0.95486 0.88247 0.87405 0.95764 1.21839 1.29835 1.17942 0.91081 0.92747 1.25692 0.95870 0.97125 1.00018 1.70773 1.24658 1.24649 1.35603 0.83550 0.75553 0.75685 0.75461 1.21633 1.21522 1.21292 1.60737 1.04962 1.62147 1.02470 1.21920 0.97868 0.95191 0.91169 1.20455 0.94502 0.96849 0.93191 1.22118 0.96310 1.00685 1.01212 1.21785 1.01597 0.93975 1.01514 1.20793 0.99465 0.99645 0.91682 1.19724 0.96424 0.94740 0.95602 1.21074 1.00227 0.94606 0.96961 1.21089 0.98685 0.99865 0.94883 1.21048 0.98253 0.95667 0.99561 1.20975 1.00545 0.95374 0.97196 1.19743 0.97256 0.96711 0.94399 1.21120 1.01776 0.93222 1.01987 0.90904 0.94952 0.95463 0.96147 0.91661 0.91925 0.85329 0.92020 0.96693 0.92227 0.92636 0.92988 0.93566 0.93770 0.90720 0.91153 0.90937 0.86107 0.86458 0.86561 0.86505 0.90250 0.92207 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.38 37.16 0.35 -2.35 16 2 C -0.15 -3.45 5.45 -26.73 -0.15 -3.59 16 3 C 0.20 4.94 1.95 -68.87 -0.13 4.81 16 4 H 0.02 0.66 7.31 -51.93 -0.38 0.28 16 5 C -0.57 -15.42 7.19 -34.44 -0.25 -15.67 16 6 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 7 C 0.02 0.45 5.29 -17.82 -0.09 0.36 16 8 N -0.92 -27.15 13.21 55.43 0.73 -26.42 16 9 Si 1.07 25.17 29.91 -169.99 -5.08 20.09 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.67 -13.73 5.27 -107.95 -0.57 -14.30 16 14 C 0.07 1.19 4.43 -3.83 -0.02 1.17 16 15 C -0.05 -0.70 0.62 -154.51 -0.10 -0.79 16 16 C -0.15 -1.96 6.29 37.16 0.23 -1.72 16 17 C -0.13 -1.94 7.66 37.15 0.28 -1.65 16 18 C -0.08 -0.96 4.20 -27.89 -0.12 -1.08 16 19 C -0.06 -0.77 3.98 -104.62 -0.42 -1.18 16 20 C -0.11 -1.26 7.98 -39.58 -0.32 -1.58 16 21 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 24 C -0.08 -0.90 4.71 -104.63 -0.49 -1.39 16 25 C -0.12 -1.22 8.29 36.00 0.30 -0.92 16 26 H 0.07 1.66 6.88 -51.93 -0.36 1.30 16 27 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 30 H 0.06 1.63 6.18 -51.93 -0.32 1.31 16 31 H 0.27 7.89 5.62 -40.82 -0.23 7.66 16 32 H 0.33 6.47 5.01 -39.29 -0.20 6.27 16 33 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 34 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 35 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 36 H 0.05 0.71 5.90 -51.93 -0.31 0.41 16 37 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.60 6.51 -51.93 -0.34 0.26 16 40 H 0.07 1.27 7.45 -51.93 -0.39 0.89 16 41 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 42 H 0.07 0.86 5.90 -51.93 -0.31 0.55 16 43 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 47 H 0.08 0.78 5.68 -51.93 -0.30 0.48 16 48 H 0.06 0.50 8.08 -51.92 -0.42 0.08 16 49 H 0.07 0.70 5.97 -51.93 -0.31 0.39 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -28.83 359.75 -9.78 -38.60 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.19 Total: 7.23 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -2.09 Total: -30.62 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.16 Total: -40.72 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.83 -9.78 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.515 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds