Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 C 1.53006 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46992 * 173.90338 * 4 3 2 6 6 C 1.46904 * 111.00233 * 72.94737 * 5 4 3 7 7 C 1.50702 * 109.47025 * 283.41987 * 6 5 4 8 8 H 1.08000 * 119.99849 * 357.93267 * 7 6 5 9 9 C 1.37875 * 120.00067 * 177.93091 * 7 6 5 10 10 N 1.31511 * 120.00073 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99876 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47683 * 89.99712 * 11 9 7 13 13 H 1.48502 * 109.46920 * 209.99593 * 11 9 7 14 14 H 1.48501 * 109.47274 * 329.99506 * 11 9 7 15 15 C 1.46903 * 111.00046 * 196.89640 * 5 4 3 16 16 H 1.08994 * 109.47283 * 186.04555 * 15 5 4 17 17 C 1.52996 * 109.47437 * 306.05156 * 15 5 4 18 18 C 1.53001 * 109.46719 * 66.04943 * 15 5 4 19 19 C 1.50700 * 109.47277 * 65.00156 * 18 15 5 20 20 C 1.38228 * 120.00098 * 89.99853 * 19 18 15 21 21 C 1.38240 * 120.00019 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00004 * 359.97438 * 21 20 19 23 23 C 1.50690 * 119.99939 * 180.02562 * 22 21 20 24 24 C 1.38235 * 119.99715 * 0.02562 * 22 21 20 25 25 C 1.38230 * 120.00108 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47034 * 300.00364 * 1 2 3 27 27 H 1.09001 * 109.46886 * 60.00256 * 1 2 3 28 28 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47034 * 239.99635 * 2 1 3 30 30 H 1.09001 * 109.46886 * 119.99744 * 2 1 3 31 31 H 1.08996 * 109.47584 * 59.99973 * 3 2 1 32 32 H 1.09001 * 109.47151 * 299.99582 * 3 2 1 33 33 H 1.09002 * 109.47155 * 53.90388 * 4 3 2 34 34 H 1.09002 * 109.46980 * 293.90446 * 4 3 2 35 35 H 1.08999 * 109.46635 * 43.41689 * 6 5 4 36 36 H 1.08996 * 109.47647 * 163.41658 * 6 5 4 37 37 H 0.97004 * 120.00407 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.46995 * 59.99236 * 17 15 5 39 39 H 1.08994 * 109.47416 * 179.97438 * 17 15 5 40 40 H 1.09006 * 109.46972 * 300.00042 * 17 15 5 41 41 H 1.09002 * 109.47272 * 305.00206 * 18 15 5 42 42 H 1.09000 * 109.47133 * 184.99996 * 18 15 5 43 43 H 1.08000 * 120.00487 * 0.26037 * 20 19 18 44 44 H 1.08004 * 120.00113 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47400 * 89.99857 * 23 22 21 46 46 H 1.09001 * 109.47328 * 209.99895 * 23 22 21 47 47 H 1.09004 * 109.47413 * 329.99118 * 23 22 21 48 48 H 1.07998 * 119.99871 * 179.97438 * 24 22 21 49 49 H 1.08006 * 119.99858 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8196 -0.1464 6 6 3.8555 3.5859 1.0901 7 6 2.4048 3.9777 1.2045 8 1 1.7111 3.7154 0.4194 9 6 1.9632 4.6709 2.3115 10 7 0.6973 5.0132 2.4111 11 14 3.1631 5.1251 3.6691 12 1 3.7563 6.4556 3.3809 13 1 2.4453 5.1741 4.9682 14 1 4.2417 4.1066 3.7377 15 6 5.4726 2.8359 -0.5485 16 1 5.8393 3.8623 -0.5461 17 6 6.2925 1.9990 0.4355 18 6 5.6094 2.2488 -1.9547 19 6 4.9035 3.1414 -2.9426 20 6 5.5904 4.1719 -3.5567 21 6 4.9430 4.9904 -4.4633 22 6 3.6088 4.7780 -4.7562 23 6 2.9032 5.6699 -5.7449 24 6 2.9219 3.7475 -4.1421 25 6 3.5693 2.9291 -3.2356 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.8369 -0.8295 34 1 3.9330 1.0262 0.9404 35 1 4.1352 2.9736 1.9474 36 1 4.4736 4.4835 1.0677 37 1 0.3864 5.5005 3.1901 38 1 5.9258 0.9726 0.4331 39 1 7.3407 2.0107 0.1370 40 1 6.1950 2.4172 1.4374 41 1 5.1620 1.2551 -1.9787 42 1 6.6648 2.1786 -2.2181 43 1 6.6340 4.3347 -3.3316 44 1 5.4796 5.7958 -4.9427 45 1 3.0016 5.2513 -6.7465 46 1 1.8476 5.7398 -5.4824 47 1 3.3500 6.6638 -5.7210 48 1 1.8795 3.5818 -4.3706 49 1 3.0325 2.1242 -2.7555 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255791540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = 5.569233 kcal Electronic energy + Delta-G solvation = -24183.485631 eV Core-core repulsion = 21109.548838 eV Total energy + Delta-G solvation = -3073.936793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.34116 -37.88055 -34.61084 -33.37239 -32.42704 -30.78034 -30.49267 -28.58702 -27.99499 -26.48947 -24.61570 -22.98732 -22.29020 -21.53546 -20.51557 -20.29843 -18.77708 -16.64562 -15.79926 -15.59281 -15.02268 -14.68465 -14.55193 -14.47285 -13.86585 -13.61954 -13.32974 -13.07419 -13.03146 -12.90687 -12.86976 -12.43562 -12.22103 -11.91869 -11.80782 -11.72643 -11.57837 -11.33274 -11.31187 -10.87399 -10.69831 -10.56860 -10.51247 -10.47113 -10.37599 -10.02634 -9.97121 -9.94162 -9.52704 -8.99067 -8.47974 -8.46152 -8.02709 -7.23589 -5.98877 -3.92740 1.75253 1.85372 3.30360 3.37963 3.39700 4.14935 4.46441 4.71618 5.08524 5.13803 5.23256 5.31167 5.35757 5.39916 5.48296 5.56478 5.60156 5.63964 5.71392 5.76380 5.76678 5.80729 5.83973 5.91614 5.98380 6.09262 6.10718 6.12745 6.23884 6.29254 6.30809 6.41586 6.46347 6.48930 6.51193 6.58494 6.61278 6.70947 6.82592 6.88422 6.96586 7.00132 7.10717 7.15331 7.44676 7.52201 7.72208 8.00920 8.17612 8.74684 9.12914 9.63682 11.13353 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.005604 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.178916 B = 4995.101541 C = 5324.824409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.069 3.931 5 N -0.513 5.513 6 C 0.162 3.838 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.867 3.133 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.082 3.918 16 H 0.076 0.924 17 C -0.184 4.184 18 C -0.073 4.073 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.079 4.079 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.021 0.979 35 H -0.010 1.010 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.115 0.885 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -6.129 -11.565 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.059 4.059 5 N -0.236 5.236 6 C 0.036 3.964 7 C -0.537 4.537 8 H 0.110 0.890 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.695 3.305 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.027 4.027 16 H 0.094 0.906 17 C -0.243 4.243 18 C -0.110 4.110 19 C -0.063 4.063 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.167 4.167 24 C -0.137 4.137 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.008 0.992 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.133 0.867 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.373 -5.793 -11.813 15.082 hybrid contribution 1.082 0.075 1.660 1.983 sum 8.455 -5.718 -10.152 14.396 Atomic orbital electron populations 1.21718 0.96317 1.00209 1.02262 1.21537 0.95654 0.98520 1.00298 1.21990 0.94360 0.94317 1.05406 1.21993 0.96289 0.89679 0.97968 1.62145 1.13717 1.12216 1.35536 1.20218 0.98380 0.92256 0.85576 1.21228 0.92526 1.34222 1.05764 0.88965 1.24885 0.94807 0.95805 0.97894 1.69884 1.14209 1.40315 1.29643 0.86990 0.81913 0.79287 0.82306 1.20420 1.21412 1.19429 1.21714 0.89686 0.98903 0.92404 0.90596 1.22504 0.99967 1.01037 1.00781 1.20723 0.98973 0.98062 0.93269 1.19635 0.94354 0.96284 0.96025 1.20906 0.99464 0.95860 0.97651 1.20837 0.94336 0.99869 0.99395 1.19787 0.94296 0.97003 0.98782 1.20736 1.00290 0.98276 0.97416 1.20975 0.99392 0.95697 0.97662 1.20970 0.93792 0.99406 0.95521 0.92359 0.93009 0.93941 0.93519 0.93065 0.87622 0.92083 0.92978 0.96073 0.99187 0.96543 0.92875 0.92571 0.93074 0.92498 0.91060 0.91601 0.86933 0.86989 0.91866 0.91722 0.92007 0.86692 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.12 -2.33 3.96 -26.73 -0.11 -2.44 16 4 C 0.07 1.23 3.62 -3.82 -0.01 1.22 16 5 N -0.51 -10.08 3.80 -228.08 -0.87 -10.95 16 6 C 0.16 3.82 3.15 -4.97 -0.02 3.80 16 7 C -0.50 -13.61 7.57 -34.44 -0.26 -13.87 16 8 H 0.09 2.70 6.17 -52.49 -0.32 2.38 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 11 Si 0.87 21.51 27.51 -169.99 -4.68 16.83 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.27 -6.47 6.48 56.52 0.37 -6.10 16 15 C 0.08 1.36 2.28 -67.71 -0.15 1.20 16 16 H 0.08 1.33 7.82 -51.93 -0.41 0.93 16 17 C -0.18 -2.73 8.53 37.16 0.32 -2.41 16 18 C -0.07 -1.02 4.77 -27.88 -0.13 -1.15 16 19 C -0.06 -0.96 4.95 -104.63 -0.52 -1.48 16 20 C -0.12 -1.74 9.70 -39.58 -0.38 -2.12 16 21 C -0.13 -1.77 9.70 -39.58 -0.38 -2.15 16 22 C -0.10 -1.41 5.88 -104.63 -0.62 -2.02 16 23 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 24 C -0.12 -1.82 9.70 -39.59 -0.38 -2.21 16 25 C -0.08 -1.26 9.31 -39.58 -0.37 -1.63 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.11 2.44 5.49 -51.93 -0.29 2.16 16 32 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 33 H 0.05 0.82 5.85 -51.93 -0.30 0.52 16 34 H 0.02 0.39 6.93 -51.93 -0.36 0.03 16 35 H -0.01 -0.23 6.15 -51.93 -0.32 -0.55 16 36 H 0.02 0.40 7.25 -51.93 -0.38 0.03 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 0.80 6.71 -51.93 -0.35 0.45 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.94 7.19 -51.93 -0.37 0.56 16 41 H 0.07 0.97 6.04 -51.93 -0.31 0.66 16 42 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 47 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 48 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.12 1.96 7.68 -52.48 -0.40 1.56 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -29.29 375.09 -10.53 -39.82 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.87 Total: 3.29 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -2.55 Total: -28.26 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.09 Total: -37.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.68 Total: 16.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.29 -10.53 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255791540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.391 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds