Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 C 1.53006 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46992 * 173.90338 * 4 3 2 6 6 C 1.46904 * 111.00233 * 72.94737 * 5 4 3 7 7 C 1.50702 * 109.47025 * 283.41987 * 6 5 4 8 8 H 1.08000 * 119.99849 * 357.93267 * 7 6 5 9 9 C 1.37875 * 120.00067 * 177.93091 * 7 6 5 10 10 N 1.31511 * 120.00073 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99876 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47683 * 89.99712 * 11 9 7 13 13 H 1.48502 * 109.46920 * 209.99593 * 11 9 7 14 14 H 1.48501 * 109.47274 * 329.99506 * 11 9 7 15 15 C 1.46903 * 111.00046 * 196.89640 * 5 4 3 16 16 H 1.08994 * 109.47283 * 186.04555 * 15 5 4 17 17 C 1.52996 * 109.47437 * 306.05156 * 15 5 4 18 18 C 1.53001 * 109.46719 * 66.04943 * 15 5 4 19 19 C 1.50700 * 109.47277 * 65.00156 * 18 15 5 20 20 C 1.38228 * 120.00098 * 89.99853 * 19 18 15 21 21 C 1.38240 * 120.00019 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00004 * 359.97438 * 21 20 19 23 23 C 1.50690 * 119.99939 * 180.02562 * 22 21 20 24 24 C 1.38235 * 119.99715 * 0.02562 * 22 21 20 25 25 C 1.38230 * 120.00108 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47034 * 300.00364 * 1 2 3 27 27 H 1.09001 * 109.46886 * 60.00256 * 1 2 3 28 28 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47034 * 239.99635 * 2 1 3 30 30 H 1.09001 * 109.46886 * 119.99744 * 2 1 3 31 31 H 1.08996 * 109.47584 * 59.99973 * 3 2 1 32 32 H 1.09001 * 109.47151 * 299.99582 * 3 2 1 33 33 H 1.09002 * 109.47155 * 53.90388 * 4 3 2 34 34 H 1.09002 * 109.46980 * 293.90446 * 4 3 2 35 35 H 1.08999 * 109.46635 * 43.41689 * 6 5 4 36 36 H 1.08996 * 109.47647 * 163.41658 * 6 5 4 37 37 H 0.97004 * 120.00407 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.46995 * 59.99236 * 17 15 5 39 39 H 1.08994 * 109.47416 * 179.97438 * 17 15 5 40 40 H 1.09006 * 109.46972 * 300.00042 * 17 15 5 41 41 H 1.09002 * 109.47272 * 305.00206 * 18 15 5 42 42 H 1.09000 * 109.47133 * 184.99996 * 18 15 5 43 43 H 1.08000 * 120.00487 * 0.26037 * 20 19 18 44 44 H 1.08004 * 120.00113 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47400 * 89.99857 * 23 22 21 46 46 H 1.09001 * 109.47328 * 209.99895 * 23 22 21 47 47 H 1.09004 * 109.47413 * 329.99118 * 23 22 21 48 48 H 1.07998 * 119.99871 * 179.97438 * 24 22 21 49 49 H 1.08006 * 119.99858 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8196 -0.1464 6 6 3.8555 3.5859 1.0901 7 6 2.4048 3.9777 1.2045 8 1 1.7111 3.7154 0.4194 9 6 1.9632 4.6709 2.3115 10 7 0.6973 5.0132 2.4111 11 14 3.1631 5.1251 3.6691 12 1 3.7563 6.4556 3.3809 13 1 2.4453 5.1741 4.9682 14 1 4.2417 4.1066 3.7377 15 6 5.4726 2.8359 -0.5485 16 1 5.8393 3.8623 -0.5461 17 6 6.2925 1.9990 0.4355 18 6 5.6094 2.2488 -1.9547 19 6 4.9035 3.1414 -2.9426 20 6 5.5904 4.1719 -3.5567 21 6 4.9430 4.9904 -4.4633 22 6 3.6088 4.7780 -4.7562 23 6 2.9032 5.6699 -5.7449 24 6 2.9219 3.7475 -4.1421 25 6 3.5693 2.9291 -3.2356 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.8369 -0.8295 34 1 3.9330 1.0262 0.9404 35 1 4.1352 2.9736 1.9474 36 1 4.4736 4.4835 1.0677 37 1 0.3864 5.5005 3.1901 38 1 5.9258 0.9726 0.4331 39 1 7.3407 2.0107 0.1370 40 1 6.1950 2.4172 1.4374 41 1 5.1620 1.2551 -1.9787 42 1 6.6648 2.1786 -2.2181 43 1 6.6340 4.3347 -3.3316 44 1 5.4796 5.7958 -4.9427 45 1 3.0016 5.2513 -6.7465 46 1 1.8476 5.7398 -5.4824 47 1 3.3500 6.6638 -5.7210 48 1 1.8795 3.5818 -4.3706 49 1 3.0325 2.1242 -2.7555 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255791540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -8.676040 kcal Electronic energy + Delta-G solvation = -24184.103352 eV Core-core repulsion = 21109.548838 eV Total energy + Delta-G solvation = -3074.554514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54573 -39.25790 -35.95306 -34.97912 -34.11650 -32.17652 -31.62260 -30.17378 -29.18330 -28.14458 -25.73360 -24.48324 -23.43006 -23.20609 -21.94096 -21.52647 -20.22914 -18.68486 -17.00314 -16.94807 -16.46812 -16.24215 -15.85765 -15.80835 -15.40317 -14.99091 -14.62102 -14.44745 -14.37210 -14.14414 -14.08196 -14.02406 -13.42422 -13.34701 -13.14245 -13.03769 -12.91304 -12.76058 -12.56719 -12.40217 -12.23575 -12.02527 -11.96571 -11.80110 -11.65211 -11.57751 -11.46146 -11.40955 -11.18779 -10.95222 -10.60188 -9.62253 -9.15027 -8.80122 -8.19063 -6.16232 0.62814 0.71436 1.32228 1.33497 1.42487 2.37161 3.01345 3.12902 3.26236 3.95818 4.04237 4.12373 4.18521 4.20869 4.30657 4.32947 4.37138 4.46362 4.49798 4.52303 4.56809 4.71351 4.76843 4.77690 4.86756 4.87744 4.91041 4.95172 4.98553 5.02944 5.05679 5.08171 5.09880 5.11923 5.22152 5.26970 5.33183 5.39942 5.41896 5.47594 5.58359 5.65939 5.70961 5.85591 5.89814 5.95787 6.15800 6.34432 6.58219 6.81066 6.90058 7.43439 8.96279 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.005604 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.178916 B = 4995.101541 C = 5324.824409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.114 4.114 4 C 0.075 3.925 5 N -0.525 5.525 6 C 0.175 3.825 7 C -0.491 4.491 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.930 3.070 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.255 1.255 15 C 0.080 3.920 16 H 0.064 0.936 17 C -0.177 4.177 18 C -0.063 4.063 19 C -0.078 4.078 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.141 4.141 25 C -0.098 4.098 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.018 0.982 35 H -0.014 1.014 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.117 0.883 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 -7.073 -12.510 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.152 4.152 4 C -0.053 4.053 5 N -0.248 5.248 6 C 0.048 3.952 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.756 3.244 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.179 1.179 15 C -0.029 4.029 16 H 0.082 0.918 17 C -0.236 4.236 18 C -0.100 4.100 19 C -0.078 4.078 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.108 4.108 23 C -0.165 4.165 24 C -0.159 4.159 25 C -0.116 4.116 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.004 0.996 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.135 0.865 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.111 -6.753 -12.774 17.635 hybrid contribution 0.188 0.366 1.828 1.874 sum 10.299 -6.387 -10.946 16.330 Atomic orbital electron populations 1.21708 0.96140 1.01621 1.00924 1.21482 0.95823 0.96183 1.01820 1.21773 0.95440 0.96027 1.01944 1.21979 0.95227 0.89147 0.98919 1.62014 1.16635 1.12937 1.33244 1.19916 0.95439 0.92489 0.87390 1.21450 0.94098 1.32912 1.04495 0.92357 1.25681 0.96378 0.96227 1.00599 1.70037 1.16315 1.42024 1.30645 0.85967 0.79948 0.79359 0.79166 1.19846 1.21220 1.17881 1.21794 0.87651 0.99051 0.94379 0.91807 1.22422 1.01511 1.00662 0.98990 1.20682 1.00690 0.97614 0.91041 1.19840 0.94170 0.97123 0.96686 1.21235 1.00581 0.95345 0.97276 1.21202 0.94371 1.00358 0.99269 1.20164 0.94829 0.96853 0.98957 1.20775 0.99869 0.98356 0.97545 1.21184 0.99881 0.96523 0.98315 1.21045 0.94560 0.99756 0.96238 0.94793 0.93324 0.91074 0.90891 0.92389 0.92531 0.93990 0.90014 0.96365 0.99631 0.97104 0.92973 0.91866 0.90089 0.94532 0.90552 0.88646 0.84733 0.84625 0.90062 0.91986 0.90899 0.86459 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.91 71.98 0.71 -3.70 16 2 C -0.12 -3.51 5.93 30.60 0.18 -3.33 16 3 C -0.11 -4.44 3.96 30.60 0.12 -4.32 16 4 C 0.07 2.64 3.62 86.31 0.31 2.95 16 5 N -0.53 -20.53 3.80 -875.50 -3.32 -23.85 16 6 C 0.17 8.32 3.15 85.56 0.27 8.58 16 7 C -0.49 -27.83 7.57 25.60 0.19 -27.64 16 8 H 0.06 3.64 6.17 -2.91 -0.02 3.62 16 9 C 0.01 0.44 5.47 84.65 0.46 0.90 16 10 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 11 Si 0.93 45.04 27.51 68.60 1.89 46.93 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.25 -11.61 6.48 99.48 0.64 -10.97 16 15 C 0.08 2.48 2.28 44.91 0.10 2.58 16 16 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 17 C -0.18 -4.75 8.53 71.98 0.61 -4.13 16 18 C -0.06 -1.59 4.77 29.85 0.14 -1.45 16 19 C -0.08 -2.28 4.95 -19.87 -0.10 -2.38 16 20 C -0.13 -3.37 9.70 22.27 0.22 -3.15 16 21 C -0.13 -3.49 9.70 22.27 0.22 -3.28 16 22 C -0.11 -2.98 5.88 -19.87 -0.12 -3.10 16 23 C -0.11 -2.31 10.01 71.23 0.71 -1.60 16 24 C -0.14 -4.35 9.70 22.27 0.22 -4.13 16 25 C -0.10 -3.14 9.31 22.27 0.21 -2.93 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.77 5.49 -2.39 -0.01 2.76 16 32 H 0.04 1.76 7.66 -2.39 -0.02 1.74 16 33 H 0.08 2.41 5.85 -2.39 -0.01 2.39 16 34 H 0.02 0.66 6.93 -2.39 -0.02 0.64 16 35 H -0.01 -0.67 6.15 -2.39 -0.01 -0.69 16 36 H 0.01 0.53 7.25 -2.39 -0.02 0.51 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.06 1.60 6.71 -2.39 -0.02 1.59 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.12 7.19 -2.38 -0.02 1.10 16 41 H 0.08 1.85 6.04 -2.39 -0.01 1.84 16 42 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 43 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 47 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 48 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 49 H 0.11 3.67 7.68 -2.91 -0.02 3.65 16 Total: -1.00 -66.16 375.09 4.15 -62.01 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.82 Total: 24.29 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 4.47 Total: -50.11 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -3.02 Total: -83.12 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.89 Total: 46.93 kcal Total: -66.16 4.15 -62.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255791540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.331 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds