Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46675 * 2 1 4 4 C 1.52997 * 109.46989 * 119.99934 * 2 1 3 5 5 C 1.53005 * 109.46954 * 175.00450 * 4 2 1 6 6 C 1.52993 * 109.47201 * 175.23868 * 5 4 2 7 7 H 1.09002 * 109.47360 * 305.19028 * 6 5 4 8 8 C 1.53003 * 109.47272 * 65.18628 * 6 5 4 9 9 N 1.46901 * 109.47228 * 185.18835 * 6 5 4 10 10 C 1.46903 * 110.99826 * 60.04868 * 9 6 5 11 11 C 1.50704 * 109.46859 * 56.60899 * 10 9 6 12 12 H 1.07994 * 120.00371 * 5.31915 * 11 10 9 13 13 C 1.37880 * 119.99292 * 185.32381 * 11 10 9 14 14 N 1.31513 * 119.99412 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00414 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46881 * 90.00515 * 15 13 11 17 17 H 1.48500 * 109.47381 * 210.00423 * 15 13 11 18 18 H 1.48497 * 109.47609 * 330.00514 * 15 13 11 19 19 C 1.46899 * 110.99892 * 184.00047 * 9 6 5 20 20 C 1.50704 * 109.46942 * 173.94900 * 19 9 6 21 21 C 1.38235 * 120.00075 * 276.10610 * 20 19 9 22 22 C 1.38237 * 119.99840 * 179.76552 * 21 20 19 23 23 C 1.38238 * 120.00060 * 0.50579 * 22 21 20 24 24 C 1.38231 * 119.99868 * 359.74808 * 23 22 21 25 25 C 1.38236 * 120.00187 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47345 * 60.00218 * 1 2 3 27 27 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47385 * 300.00013 * 1 2 3 29 29 H 1.08991 * 109.46974 * 240.00427 * 2 1 3 30 30 H 1.09005 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47550 * 300.00074 * 3 2 1 32 32 H 1.09005 * 109.47245 * 60.00445 * 3 2 1 33 33 H 1.09005 * 109.47278 * 294.99839 * 4 2 1 34 34 H 1.08992 * 109.47388 * 55.00223 * 4 2 1 35 35 H 1.09003 * 109.46606 * 295.23865 * 5 4 2 36 36 H 1.08998 * 109.46962 * 55.23723 * 5 4 2 37 37 H 1.09000 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47266 * 299.99972 * 8 6 5 39 39 H 1.09002 * 109.46600 * 60.00493 * 8 6 5 40 40 H 1.08996 * 109.46721 * 176.60614 * 10 9 6 41 41 H 1.08994 * 109.47275 * 296.60749 * 10 9 6 42 42 H 0.97009 * 120.00091 * 179.97438 * 14 13 11 43 43 H 1.08994 * 109.47660 * 293.95113 * 19 9 6 44 44 H 1.09001 * 109.47265 * 53.95790 * 19 9 6 45 45 H 1.08006 * 120.00089 * 359.97438 * 21 20 19 46 46 H 1.08002 * 119.99848 * 180.22949 * 22 21 20 47 47 H 1.08001 * 119.99743 * 179.72447 * 23 22 21 48 48 H 1.08001 * 120.00080 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00117 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0847 -1.4447 2.4894 7 1 3.7219 -0.8622 3.3363 8 6 3.5838 -2.8854 2.6096 9 7 5.5536 -1.4360 2.4825 10 6 6.0714 -0.0659 2.3692 11 6 5.5216 0.7733 3.4938 12 1 4.9244 0.3146 4.2679 13 6 5.7812 2.1269 3.5342 14 7 5.3010 2.8593 4.5153 15 14 6.8146 2.9202 2.1957 16 1 5.9310 3.3748 1.0922 17 1 7.5435 4.0854 2.7582 18 1 7.7910 1.9312 1.6725 19 6 6.0897 -2.1044 3.6757 20 6 7.5889 -2.2078 3.5627 21 6 8.1586 -3.2516 2.8578 22 6 9.5337 -3.3437 2.7501 23 6 10.3394 -2.3978 3.3560 24 6 9.7698 -1.3569 4.0652 25 6 8.3946 -1.2616 4.1681 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.7516 -0.1583 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.8500 -1.4645 0.3481 36 1 3.9955 0.1618 1.0570 37 1 3.9545 -3.3228 3.5366 38 1 2.4938 -2.8919 2.6148 39 1 3.9466 -3.4680 1.7628 40 1 7.1597 -0.0829 2.4270 41 1 5.7648 0.3606 1.4142 42 1 5.4839 3.8116 4.5441 43 1 5.8312 -1.5265 4.5629 44 1 5.6617 -3.1037 3.7555 45 1 7.5292 -3.9933 2.3885 46 1 9.9786 -4.1572 2.1963 47 1 11.4138 -2.4723 3.2755 48 1 10.3992 -0.6181 4.5389 49 1 7.9496 -0.4486 4.7226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256363072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = 4.511592 kcal Electronic energy + Delta-G solvation = -24116.411387 eV Core-core repulsion = 21042.428731 eV Total energy + Delta-G solvation = -3073.982656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.10031 -37.76153 -36.01809 -32.75061 -32.29127 -30.47433 -30.21570 -28.74239 -26.93853 -26.63598 -25.13247 -23.15454 -22.11510 -21.81895 -20.39108 -19.60038 -18.79764 -16.78999 -16.21534 -15.48703 -14.96942 -14.77781 -14.56663 -14.32624 -14.23353 -13.86742 -13.46361 -12.96824 -12.87372 -12.72302 -12.47267 -12.24351 -12.08255 -12.02205 -11.85451 -11.55593 -11.31221 -11.14999 -11.12400 -10.93327 -10.73288 -10.53357 -10.47617 -10.32596 -10.28971 -10.13678 -9.98335 -9.73987 -9.61995 -9.40930 -8.58528 -8.40795 -8.22370 -7.12291 -6.10147 -4.08195 1.83580 1.89589 3.26399 3.35143 3.41026 4.23189 4.40316 4.91106 5.14914 5.19489 5.24480 5.27209 5.33107 5.33886 5.46460 5.61428 5.65085 5.69422 5.82359 5.87935 5.88654 5.95623 6.01095 6.06712 6.09610 6.11519 6.17058 6.20210 6.25591 6.34173 6.41547 6.46853 6.51986 6.54338 6.58185 6.61791 6.65745 6.76040 6.88998 6.96032 6.99516 7.03853 7.07205 7.21065 7.26267 7.50818 7.60922 8.09854 8.17059 8.45988 8.92788 9.54197 11.02590 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.005796 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.272917 B = 4829.993949 C = 6249.398176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.111 4.111 5 C -0.107 4.107 6 C 0.087 3.913 7 H 0.056 0.944 8 C -0.148 4.148 9 N -0.524 5.524 10 C 0.149 3.851 11 C -0.541 4.541 12 H 0.074 0.926 13 C 0.076 3.924 14 N -0.899 5.899 15 Si 0.867 3.133 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.263 1.263 19 C 0.091 3.909 20 C -0.059 4.059 21 C -0.106 4.106 22 C -0.133 4.133 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.097 4.097 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -9.845 -5.506 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.022 4.022 7 H 0.074 0.926 8 C -0.205 4.205 9 N -0.248 5.248 10 C 0.023 3.977 11 C -0.580 4.580 12 H 0.092 0.908 13 C -0.126 4.126 14 N -0.537 5.537 15 Si 0.695 3.305 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.037 4.037 20 C -0.059 4.059 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.116 4.116 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.617 -9.927 -5.851 11.540 hybrid contribution 0.341 1.238 0.050 1.285 sum -0.276 -8.689 -5.800 10.451 Atomic orbital electron populations 1.21841 0.95960 1.01115 1.01365 1.21086 0.94916 0.96650 0.98656 1.21891 1.01928 0.95733 1.01111 1.21647 0.96266 0.99510 0.97458 1.21599 0.94014 1.01935 0.96938 1.21442 0.88267 0.94519 0.97954 0.92597 1.22004 0.99982 0.97356 1.01197 1.62540 1.06395 1.19551 1.36285 1.20250 0.96034 0.84949 0.96515 1.21599 1.33414 0.93108 1.09831 0.90820 1.24881 0.95156 0.97289 0.95269 1.69922 1.45371 1.06569 1.31845 0.86963 0.81445 0.79400 0.82739 1.20189 1.21420 1.18779 1.20995 0.89904 0.98677 0.94083 1.19871 0.95824 0.94082 0.96140 1.20966 0.94418 0.98417 0.98633 1.21004 0.93930 0.99322 1.00835 1.21006 0.99081 0.95727 0.99255 1.21113 0.95234 0.98258 1.00047 1.21360 0.93202 0.98216 0.98774 0.93258 0.93119 0.92785 0.91776 0.91970 0.93627 0.92546 0.91921 0.92610 0.92795 0.90520 0.93220 0.92947 0.92752 0.95051 0.95681 0.92815 0.93105 0.91337 0.86555 0.86940 0.87030 0.86711 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.09 -1.29 2.92 -90.62 -0.26 -1.55 16 3 C -0.15 -2.24 8.95 37.16 0.33 -1.91 16 4 C -0.11 -1.66 4.32 -26.73 -0.12 -1.78 16 5 C -0.11 -1.86 4.45 -26.73 -0.12 -1.98 16 6 C 0.09 1.59 1.79 -67.71 -0.12 1.47 16 7 H 0.06 1.21 6.36 -51.93 -0.33 0.88 16 8 C -0.15 -2.22 8.61 37.16 0.32 -1.90 16 9 N -0.52 -10.45 4.60 -229.52 -1.06 -11.51 16 10 C 0.15 3.46 3.46 -4.97 -0.02 3.45 16 11 C -0.54 -14.23 8.11 -34.44 -0.28 -14.51 16 12 H 0.07 2.12 6.09 -52.49 -0.32 1.80 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 15 Si 0.87 21.25 27.37 -169.99 -4.65 16.59 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.35 6.70 56.52 0.38 -5.97 16 19 C 0.09 1.70 4.61 -4.97 -0.02 1.68 16 20 C -0.06 -1.06 4.56 -104.62 -0.48 -1.54 16 21 C -0.11 -1.70 9.73 -39.58 -0.38 -2.08 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.10 -1.82 8.21 -39.58 -0.33 -2.14 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.75 6.81 -51.93 -0.35 0.40 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.54 4.42 -51.93 -0.23 1.31 16 37 H 0.05 0.72 6.21 -51.93 -0.32 0.40 16 38 H 0.05 0.71 6.68 -51.93 -0.35 0.36 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.77 5.35 -51.93 -0.28 0.49 16 41 H 0.03 0.60 5.51 -51.93 -0.29 0.32 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.05 1.07 6.69 -51.93 -0.35 0.72 16 44 H 0.07 1.13 5.88 -51.93 -0.31 0.83 16 45 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -28.26 369.73 -10.32 -38.58 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.53 Total: 5.87 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -2.42 Total: -29.33 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.28 Total: -37.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.65 Total: 16.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.26 -10.32 -38.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256363072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.093 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds