Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46675 * 2 1 4 4 C 1.52997 * 109.46989 * 119.99934 * 2 1 3 5 5 C 1.53005 * 109.46954 * 175.00450 * 4 2 1 6 6 C 1.52993 * 109.47201 * 175.23868 * 5 4 2 7 7 H 1.09002 * 109.47360 * 305.19028 * 6 5 4 8 8 C 1.53003 * 109.47272 * 65.18628 * 6 5 4 9 9 N 1.46901 * 109.47228 * 185.18835 * 6 5 4 10 10 C 1.46903 * 110.99826 * 60.04868 * 9 6 5 11 11 C 1.50704 * 109.46859 * 56.60899 * 10 9 6 12 12 H 1.07994 * 120.00371 * 5.31915 * 11 10 9 13 13 C 1.37880 * 119.99292 * 185.32381 * 11 10 9 14 14 N 1.31513 * 119.99412 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00414 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46881 * 90.00515 * 15 13 11 17 17 H 1.48500 * 109.47381 * 210.00423 * 15 13 11 18 18 H 1.48497 * 109.47609 * 330.00514 * 15 13 11 19 19 C 1.46899 * 110.99892 * 184.00047 * 9 6 5 20 20 C 1.50704 * 109.46942 * 173.94900 * 19 9 6 21 21 C 1.38235 * 120.00075 * 276.10610 * 20 19 9 22 22 C 1.38237 * 119.99840 * 179.76552 * 21 20 19 23 23 C 1.38238 * 120.00060 * 0.50579 * 22 21 20 24 24 C 1.38231 * 119.99868 * 359.74808 * 23 22 21 25 25 C 1.38236 * 120.00187 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47345 * 60.00218 * 1 2 3 27 27 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47385 * 300.00013 * 1 2 3 29 29 H 1.08991 * 109.46974 * 240.00427 * 2 1 3 30 30 H 1.09005 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47550 * 300.00074 * 3 2 1 32 32 H 1.09005 * 109.47245 * 60.00445 * 3 2 1 33 33 H 1.09005 * 109.47278 * 294.99839 * 4 2 1 34 34 H 1.08992 * 109.47388 * 55.00223 * 4 2 1 35 35 H 1.09003 * 109.46606 * 295.23865 * 5 4 2 36 36 H 1.08998 * 109.46962 * 55.23723 * 5 4 2 37 37 H 1.09000 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47266 * 299.99972 * 8 6 5 39 39 H 1.09002 * 109.46600 * 60.00493 * 8 6 5 40 40 H 1.08996 * 109.46721 * 176.60614 * 10 9 6 41 41 H 1.08994 * 109.47275 * 296.60749 * 10 9 6 42 42 H 0.97009 * 120.00091 * 179.97438 * 14 13 11 43 43 H 1.08994 * 109.47660 * 293.95113 * 19 9 6 44 44 H 1.09001 * 109.47265 * 53.95790 * 19 9 6 45 45 H 1.08006 * 120.00089 * 359.97438 * 21 20 19 46 46 H 1.08002 * 119.99848 * 180.22949 * 22 21 20 47 47 H 1.08001 * 119.99743 * 179.72447 * 23 22 21 48 48 H 1.08001 * 120.00080 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00117 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0847 -1.4447 2.4894 7 1 3.7219 -0.8622 3.3363 8 6 3.5838 -2.8854 2.6096 9 7 5.5536 -1.4360 2.4825 10 6 6.0714 -0.0659 2.3692 11 6 5.5216 0.7733 3.4938 12 1 4.9244 0.3146 4.2679 13 6 5.7812 2.1269 3.5342 14 7 5.3010 2.8593 4.5153 15 14 6.8146 2.9202 2.1957 16 1 5.9310 3.3748 1.0922 17 1 7.5435 4.0854 2.7582 18 1 7.7910 1.9312 1.6725 19 6 6.0897 -2.1044 3.6757 20 6 7.5889 -2.2078 3.5627 21 6 8.1586 -3.2516 2.8578 22 6 9.5337 -3.3437 2.7501 23 6 10.3394 -2.3978 3.3560 24 6 9.7698 -1.3569 4.0652 25 6 8.3946 -1.2616 4.1681 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.7516 -0.1583 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.8500 -1.4645 0.3481 36 1 3.9955 0.1618 1.0570 37 1 3.9545 -3.3228 3.5366 38 1 2.4938 -2.8919 2.6148 39 1 3.9466 -3.4680 1.7628 40 1 7.1597 -0.0829 2.4270 41 1 5.7648 0.3606 1.4142 42 1 5.4839 3.8116 4.5441 43 1 5.8312 -1.5265 4.5629 44 1 5.6617 -3.1037 3.7555 45 1 7.5292 -3.9933 2.3885 46 1 9.9786 -4.1572 2.1963 47 1 11.4138 -2.4723 3.2755 48 1 10.3992 -0.6181 4.5389 49 1 7.9496 -0.4486 4.7226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256363072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = -9.839468 kcal Electronic energy + Delta-G solvation = -24117.033696 eV Core-core repulsion = 21042.428731 eV Total energy + Delta-G solvation = -3074.604964 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51087 -39.14467 -37.31543 -34.73632 -33.75176 -31.93075 -31.59122 -30.20435 -28.33639 -27.96676 -26.67394 -24.60038 -23.64097 -23.27035 -21.72677 -20.79912 -20.50464 -18.77458 -17.54390 -16.94582 -16.54350 -16.25001 -15.96014 -15.91142 -15.64223 -15.33104 -14.75650 -14.44159 -14.27987 -14.15521 -13.96078 -13.62456 -13.44104 -13.34429 -13.12042 -13.02022 -12.96764 -12.74798 -12.52824 -12.36825 -12.24310 -11.93807 -11.88087 -11.76850 -11.71631 -11.67307 -11.51941 -11.36364 -11.12911 -10.98294 -10.74698 -9.69020 -9.54233 -8.88463 -8.30359 -6.30877 0.55912 0.61848 1.27389 1.30148 1.41145 2.30740 2.92029 3.06151 3.44296 3.91547 4.01285 4.05792 4.10937 4.12255 4.26619 4.32095 4.36431 4.39342 4.52793 4.60678 4.69204 4.72620 4.77562 4.80017 4.85947 4.89753 4.92126 4.93574 5.03219 5.04036 5.09410 5.12800 5.20259 5.21342 5.26234 5.27905 5.31193 5.31940 5.43730 5.45560 5.54569 5.63416 5.66684 5.70210 5.72210 5.91305 6.15657 6.24368 6.40583 6.52287 6.74518 7.34361 8.85912 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.005796 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.272917 B = 4829.993949 C = 6249.398176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.102 4.102 6 C 0.084 3.916 7 H 0.012 0.988 8 C -0.137 4.137 9 N -0.516 5.516 10 C 0.164 3.836 11 C -0.523 4.523 12 H 0.034 0.966 13 C 0.021 3.979 14 N -0.945 5.945 15 Si 0.927 3.073 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.254 1.254 19 C 0.097 3.903 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.126 4.126 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.012 0.988 44 H 0.095 0.905 45 H 0.136 0.864 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.126 0.874 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -12.524 -8.359 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.024 4.024 7 H 0.030 0.970 8 C -0.195 4.195 9 N -0.238 5.238 10 C 0.036 3.964 11 C -0.562 4.562 12 H 0.053 0.947 13 C -0.177 4.177 14 N -0.586 5.586 15 Si 0.751 3.249 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.178 1.178 19 C -0.031 4.031 20 C -0.080 4.080 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.145 4.145 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.113 0.887 45 H 0.154 0.846 46 H 0.169 0.831 47 H 0.165 0.835 48 H 0.144 0.856 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.306 -12.625 -8.709 15.340 hybrid contribution 0.063 1.994 1.015 2.238 sum 0.369 -10.631 -7.694 13.128 Atomic orbital electron populations 1.21802 0.94088 1.02297 1.01682 1.21083 0.96439 0.95256 0.98208 1.21895 1.00401 0.97230 1.01192 1.21599 0.94594 1.00689 0.97352 1.21540 0.95574 1.00162 0.96660 1.21528 0.87234 0.96699 0.96972 0.97014 1.21911 1.01102 0.94445 1.02003 1.62586 1.07361 1.17139 1.36746 1.19973 0.95301 0.86384 0.94692 1.21708 1.31740 0.93316 1.09463 0.94736 1.25648 0.96587 0.98015 0.97435 1.70061 1.47581 1.06873 1.34097 0.86004 0.80107 0.78563 0.80179 1.19260 1.21117 1.17772 1.20977 0.91240 0.98977 0.91875 1.19859 0.94999 0.95378 0.97765 1.21194 0.95691 0.97738 0.97925 1.21457 0.93182 0.99799 0.99798 1.21415 1.01002 0.94433 0.97591 1.21319 0.94179 0.99506 1.00542 1.21194 0.94769 0.98205 1.00331 0.91870 0.91501 0.93610 0.90349 0.94302 0.91588 0.94397 0.94425 0.90205 0.91194 0.93838 0.92989 0.91130 0.91059 0.95829 0.95947 0.92839 0.97005 0.88711 0.84570 0.83131 0.83536 0.85570 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -2.36 2.92 -10.80 -0.03 -2.39 16 3 C -0.15 -4.51 8.95 71.98 0.64 -3.87 16 4 C -0.10 -3.08 4.32 30.59 0.13 -2.95 16 5 C -0.10 -3.53 4.45 30.59 0.14 -3.40 16 6 C 0.08 3.16 1.79 44.91 0.08 3.24 16 7 H 0.01 0.55 6.36 -2.39 -0.02 0.53 16 8 C -0.14 -3.90 8.61 71.98 0.62 -3.28 16 9 N -0.52 -20.96 4.60 -880.07 -4.05 -25.01 16 10 C 0.16 7.90 3.46 85.56 0.30 8.20 16 11 C -0.52 -29.46 8.11 25.60 0.21 -29.26 16 12 H 0.03 2.18 6.09 -2.91 -0.02 2.16 16 13 C 0.02 1.22 5.47 84.66 0.46 1.69 16 14 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 15 Si 0.93 45.27 27.37 68.60 1.88 47.15 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 18 H -0.25 -11.91 6.70 99.48 0.67 -11.25 16 19 C 0.10 3.73 4.61 85.56 0.39 4.13 16 20 C -0.08 -2.90 4.56 -19.86 -0.09 -2.99 16 21 C -0.11 -3.16 9.73 22.27 0.22 -2.94 16 22 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 24 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 25 C -0.13 -4.92 8.21 22.27 0.18 -4.73 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.33 6.47 -2.38 -0.02 1.31 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.97 6.81 -2.39 -0.02 1.95 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.80 4.42 -2.39 -0.01 1.79 16 37 H 0.05 1.44 6.21 -2.39 -0.01 1.43 16 38 H 0.07 1.76 6.68 -2.39 -0.02 1.74 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.02 1.19 5.35 -2.39 -0.01 1.18 16 41 H 0.02 1.10 5.51 -2.39 -0.01 1.09 16 42 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.01 0.54 6.69 -2.39 -0.02 0.52 16 44 H 0.09 3.10 5.88 -2.39 -0.01 3.08 16 45 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 47 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 48 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 49 H 0.09 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -66.04 369.73 3.57 -62.48 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.86 Total: 25.29 kcal Atomic # 6 Polarization: -55.66 SS G_CDS: 4.58 Total: -51.07 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.75 Total: -83.85 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -66.04 3.57 -62.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256363072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.637 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds