Wall clock time and date at job start Tue Mar 31 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47294 * 2 1 4 4 C 1.52998 * 109.47037 * 184.97560 * 3 2 1 5 5 C 1.53002 * 109.46812 * 179.21552 * 4 3 2 6 6 C 1.53002 * 109.46997 * 179.74946 * 5 4 3 7 7 C 1.52995 * 109.47339 * 173.56824 * 6 5 4 8 8 N 1.46893 * 109.47510 * 299.21612 * 4 3 2 9 9 C 1.46908 * 111.00065 * 277.30582 * 8 4 3 10 10 C 1.50694 * 109.46972 * 74.81253 * 9 8 4 11 11 H 1.07994 * 120.00675 * 2.89144 * 10 9 8 12 12 C 1.37878 * 119.99447 * 182.89065 * 10 9 8 13 13 N 1.31516 * 120.00592 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99949 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46966 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47368 * 119.99831 * 14 12 10 17 17 H 1.48500 * 109.47353 * 240.00308 * 14 12 10 18 18 C 1.46901 * 111.00358 * 153.35210 * 8 4 3 19 19 C 1.50707 * 109.46593 * 286.46479 * 18 8 4 20 20 C 1.38228 * 120.00257 * 95.16475 * 19 18 8 21 21 C 1.38231 * 120.00049 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.00250 * 359.97096 * 21 20 19 23 23 C 1.38234 * 119.99927 * 0.28384 * 22 21 20 24 24 C 1.38235 * 119.99907 * 359.50928 * 23 22 21 25 25 H 1.09001 * 109.47155 * 299.99913 * 1 2 3 26 26 H 1.09008 * 109.46981 * 59.99900 * 1 2 3 27 27 H 1.08994 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46661 * 240.00143 * 2 1 3 29 29 H 1.08994 * 109.46710 * 120.00617 * 2 1 3 30 30 H 1.09011 * 109.46912 * 64.98110 * 3 2 1 31 31 H 1.08994 * 109.47572 * 304.98710 * 3 2 1 32 32 H 1.08997 * 109.46671 * 59.21913 * 4 3 2 33 33 H 1.08998 * 109.47145 * 299.74188 * 5 4 3 34 34 H 1.08999 * 109.47516 * 59.74511 * 5 4 3 35 35 H 1.09006 * 109.46680 * 293.56300 * 6 5 4 36 36 H 1.08998 * 109.47477 * 53.55966 * 6 5 4 37 37 H 1.08998 * 109.47537 * 59.99178 * 7 6 5 38 38 H 1.09001 * 109.47190 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47246 * 299.99696 * 7 6 5 40 40 H 1.09000 * 109.47009 * 194.81956 * 9 8 4 41 41 H 1.09004 * 109.46519 * 314.81156 * 9 8 4 42 42 H 0.96998 * 120.00239 * 179.97438 * 13 12 10 43 43 H 1.08996 * 109.47375 * 166.46529 * 18 8 4 44 44 H 1.09001 * 109.46945 * 46.45622 * 18 8 4 45 45 H 1.08002 * 119.99774 * 359.97180 * 20 19 18 46 46 H 1.08003 * 120.00332 * 180.02562 * 21 20 19 47 47 H 1.07997 * 120.00702 * 180.02562 * 22 21 20 48 48 H 1.08004 * 120.00222 * 179.72169 * 23 22 21 49 49 H 1.07999 * 120.00311 * 180.27700 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4442 -0.1251 5 6 4.0733 2.8871 -0.1448 6 6 5.5987 2.8888 -0.2636 7 6 6.0946 4.3248 -0.4445 8 7 4.1510 0.7341 1.0195 9 6 4.2571 1.6172 2.1887 10 6 2.8916 1.8139 2.7950 11 1 2.0384 1.2945 2.3845 12 6 2.7316 2.6572 3.8741 13 7 3.7706 3.2894 4.3745 14 14 1.0391 2.9006 4.6263 15 1 0.0458 2.0822 3.8854 16 1 1.0649 2.4795 6.0501 17 1 0.6609 4.3341 4.5408 18 6 5.4587 0.1627 0.6711 19 6 5.2615 -1.0349 -0.2224 20 6 5.3311 -0.8917 -1.5955 21 6 5.1508 -1.9903 -2.4149 22 6 4.9015 -3.2321 -1.8613 23 6 4.8266 -3.3743 -0.4884 24 6 5.0112 -2.2766 0.3313 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7514 1.9299 0.9313 31 1 1.6057 1.9815 -0.8419 32 1 3.8541 0.9444 -1.0496 33 1 3.6420 3.4127 -0.9967 34 1 3.7801 3.3883 0.7777 35 1 6.0340 2.4655 0.6416 36 1 5.8968 2.2903 -1.1244 37 1 5.7965 4.9234 0.4163 38 1 7.1813 4.3261 -0.5287 39 1 5.6592 4.7483 -1.3497 40 1 4.9206 1.1655 2.9261 41 1 4.6601 2.5818 1.8800 42 1 3.6579 3.8829 5.1334 43 1 5.9753 -0.1437 1.5806 44 1 6.0548 0.9112 0.1490 45 1 5.5264 0.0784 -2.0281 46 1 5.2056 -1.8786 -3.4878 47 1 4.7610 -4.0905 -2.5015 48 1 4.6273 -4.3437 -0.0559 49 1 4.9572 -2.3885 1.4041 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257334984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:23 Heat of formation + Delta-G solvation = 19.590856 kcal Electronic energy + Delta-G solvation = -24788.225451 eV Core-core repulsion = 21714.896681 eV Total energy + Delta-G solvation = -3073.328770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.46916 -38.00402 -33.91117 -33.28923 -32.68264 -31.03052 -30.61728 -29.05408 -27.14904 -25.86342 -24.39371 -22.57721 -22.26514 -21.57518 -20.61823 -20.07359 -18.65825 -16.71877 -16.24940 -15.81581 -15.00443 -14.84260 -14.55662 -14.15603 -13.82028 -13.71052 -13.50411 -13.11979 -13.00758 -12.63273 -12.38420 -12.22760 -12.16059 -11.78282 -11.57936 -11.37894 -11.11541 -11.06962 -10.88580 -10.86468 -10.79299 -10.62972 -10.43928 -10.33237 -10.08927 -10.04027 -9.83378 -9.54837 -9.29375 -8.88849 -8.60979 -8.42078 -8.32271 -6.99938 -5.98053 -3.96362 1.66535 1.69973 3.31713 3.40389 3.44313 4.07074 4.46553 5.05105 5.14534 5.18951 5.27691 5.31942 5.36783 5.40091 5.50779 5.62372 5.72956 5.75143 5.78654 5.81689 5.87916 5.98314 6.02357 6.12406 6.19498 6.19774 6.29614 6.33005 6.36721 6.42519 6.44542 6.50761 6.54011 6.61845 6.70420 6.74566 6.76970 6.77595 6.92345 7.01314 7.04774 7.21969 7.28427 7.31689 7.43828 7.52714 7.94769 8.20521 8.31786 8.63450 9.11946 9.66040 11.11965 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.006032 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.652788 B = 4640.608994 C = 5366.372639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.120 4.120 4 C 0.100 3.900 5 C -0.153 4.153 6 C -0.127 4.127 7 C -0.149 4.149 8 N -0.517 5.517 9 C 0.177 3.823 10 C -0.497 4.497 11 H 0.076 0.924 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.886 3.114 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.287 1.287 18 C 0.067 3.933 19 C -0.053 4.053 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.098 4.098 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.258 0.742 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -6.695 -11.833 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.157 4.157 4 C -0.009 4.009 5 C -0.191 4.191 6 C -0.164 4.164 7 C -0.206 4.206 8 N -0.241 5.241 9 C 0.052 3.948 10 C -0.536 4.536 11 H 0.093 0.907 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.715 3.285 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.060 4.060 19 C -0.054 4.054 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.117 4.117 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.238 -6.947 -11.547 13.660 hybrid contribution -0.398 0.859 0.273 0.986 sum 1.840 -6.087 -11.273 12.943 Atomic orbital electron populations 1.21799 0.97740 1.00260 1.00984 1.21281 0.93475 0.97722 1.01810 1.21912 0.94231 0.96617 1.02980 1.21508 0.95051 0.91247 0.93135 1.22299 0.94404 0.99420 1.03025 1.21842 0.97114 0.96320 1.01158 1.21762 0.99871 0.97579 1.01405 1.62304 1.19358 1.36929 1.05506 1.20075 0.97691 0.90911 0.86075 1.21413 0.94407 1.24784 1.12947 0.90658 1.24962 0.96376 0.96252 0.97047 1.69961 1.29208 1.29911 1.24889 0.86616 0.84965 0.77727 0.79217 1.19592 1.21251 1.21314 1.21499 0.93318 0.93496 0.97718 1.20020 0.96616 0.95175 0.93590 1.21038 1.00996 0.98209 0.93381 1.21014 1.01055 0.93069 0.99180 1.20997 1.01878 0.97156 0.95117 1.21094 1.00790 0.98573 0.93713 1.21063 0.98492 0.92147 0.99987 0.92910 0.93936 0.93909 0.94105 0.90517 0.88030 0.94443 0.92529 0.93418 0.88746 0.90873 0.93296 0.92450 0.93591 0.93503 0.96349 0.96208 0.93228 0.90941 0.92980 0.86770 0.86866 0.86937 0.86710 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.11 -1.86 5.51 -26.73 -0.15 -2.01 16 3 C -0.12 -2.23 4.24 -26.73 -0.11 -2.34 16 4 C 0.10 1.80 1.88 -67.72 -0.13 1.68 16 5 C -0.15 -2.75 4.15 -26.73 -0.11 -2.86 16 6 C -0.13 -2.07 3.92 -26.73 -0.10 -2.17 16 7 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 8 N -0.52 -10.12 3.65 -229.52 -0.84 -10.96 16 9 C 0.18 4.20 3.81 -4.97 -0.02 4.18 16 10 C -0.50 -12.87 7.36 -34.44 -0.25 -13.12 16 11 H 0.08 1.94 5.31 -52.49 -0.28 1.67 16 12 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 13 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 14 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.07 1.16 4.55 -4.97 -0.02 1.14 16 19 C -0.05 -0.83 5.05 -104.62 -0.53 -1.36 16 20 C -0.12 -1.67 8.29 -39.59 -0.33 -2.00 16 21 C -0.13 -1.60 10.05 -39.59 -0.40 -1.99 16 22 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.10 -1.48 9.72 -39.58 -0.38 -1.86 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 30 H 0.10 2.19 4.80 -51.92 -0.25 1.95 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.98 5.58 -51.93 -0.29 0.69 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.05 5.96 -51.93 -0.31 1.74 16 35 H 0.07 1.32 4.77 -51.93 -0.25 1.07 16 36 H 0.05 0.72 7.55 -51.93 -0.39 0.33 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.02 0.48 7.65 -51.93 -0.40 0.09 16 41 H 0.02 0.50 4.08 -51.93 -0.21 0.29 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.29 7.63 -51.93 -0.40 0.89 16 44 H 0.05 0.86 4.01 -51.93 -0.21 0.65 16 45 H 0.11 1.53 7.63 -52.49 -0.40 1.13 16 46 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 47 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 49 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -27.04 368.12 -10.68 -37.72 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.41 Total: 5.80 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.69 Total: -29.29 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.10 Total: -35.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.04 -10.68 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257334984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.310 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds