Wall clock time and date at job start Tue Mar 31 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47294 * 2 1 4 4 C 1.52998 * 109.47037 * 184.97560 * 3 2 1 5 5 C 1.53002 * 109.46812 * 179.21552 * 4 3 2 6 6 C 1.53002 * 109.46997 * 179.74946 * 5 4 3 7 7 C 1.52995 * 109.47339 * 173.56824 * 6 5 4 8 8 N 1.46893 * 109.47510 * 299.21612 * 4 3 2 9 9 C 1.46908 * 111.00065 * 277.30582 * 8 4 3 10 10 C 1.50694 * 109.46972 * 74.81253 * 9 8 4 11 11 H 1.07994 * 120.00675 * 2.89144 * 10 9 8 12 12 C 1.37878 * 119.99447 * 182.89065 * 10 9 8 13 13 N 1.31516 * 120.00592 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99949 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46966 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47368 * 119.99831 * 14 12 10 17 17 H 1.48500 * 109.47353 * 240.00308 * 14 12 10 18 18 C 1.46901 * 111.00358 * 153.35210 * 8 4 3 19 19 C 1.50707 * 109.46593 * 286.46479 * 18 8 4 20 20 C 1.38228 * 120.00257 * 95.16475 * 19 18 8 21 21 C 1.38231 * 120.00049 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.00250 * 359.97096 * 21 20 19 23 23 C 1.38234 * 119.99927 * 0.28384 * 22 21 20 24 24 C 1.38235 * 119.99907 * 359.50928 * 23 22 21 25 25 H 1.09001 * 109.47155 * 299.99913 * 1 2 3 26 26 H 1.09008 * 109.46981 * 59.99900 * 1 2 3 27 27 H 1.08994 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46661 * 240.00143 * 2 1 3 29 29 H 1.08994 * 109.46710 * 120.00617 * 2 1 3 30 30 H 1.09011 * 109.46912 * 64.98110 * 3 2 1 31 31 H 1.08994 * 109.47572 * 304.98710 * 3 2 1 32 32 H 1.08997 * 109.46671 * 59.21913 * 4 3 2 33 33 H 1.08998 * 109.47145 * 299.74188 * 5 4 3 34 34 H 1.08999 * 109.47516 * 59.74511 * 5 4 3 35 35 H 1.09006 * 109.46680 * 293.56300 * 6 5 4 36 36 H 1.08998 * 109.47477 * 53.55966 * 6 5 4 37 37 H 1.08998 * 109.47537 * 59.99178 * 7 6 5 38 38 H 1.09001 * 109.47190 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47246 * 299.99696 * 7 6 5 40 40 H 1.09000 * 109.47009 * 194.81956 * 9 8 4 41 41 H 1.09004 * 109.46519 * 314.81156 * 9 8 4 42 42 H 0.96998 * 120.00239 * 179.97438 * 13 12 10 43 43 H 1.08996 * 109.47375 * 166.46529 * 18 8 4 44 44 H 1.09001 * 109.46945 * 46.45622 * 18 8 4 45 45 H 1.08002 * 119.99774 * 359.97180 * 20 19 18 46 46 H 1.08003 * 120.00332 * 180.02562 * 21 20 19 47 47 H 1.07997 * 120.00702 * 180.02562 * 22 21 20 48 48 H 1.08004 * 120.00222 * 179.72169 * 23 22 21 49 49 H 1.07999 * 120.00311 * 180.27700 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4442 -0.1251 5 6 4.0733 2.8871 -0.1448 6 6 5.5987 2.8888 -0.2636 7 6 6.0946 4.3248 -0.4445 8 7 4.1510 0.7341 1.0195 9 6 4.2571 1.6172 2.1887 10 6 2.8916 1.8139 2.7950 11 1 2.0384 1.2945 2.3845 12 6 2.7316 2.6572 3.8741 13 7 3.7706 3.2894 4.3745 14 14 1.0391 2.9006 4.6263 15 1 0.0458 2.0822 3.8854 16 1 1.0649 2.4795 6.0501 17 1 0.6609 4.3341 4.5408 18 6 5.4587 0.1627 0.6711 19 6 5.2615 -1.0349 -0.2224 20 6 5.3311 -0.8917 -1.5955 21 6 5.1508 -1.9903 -2.4149 22 6 4.9015 -3.2321 -1.8613 23 6 4.8266 -3.3743 -0.4884 24 6 5.0112 -2.2766 0.3313 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7514 1.9299 0.9313 31 1 1.6057 1.9815 -0.8419 32 1 3.8541 0.9444 -1.0496 33 1 3.6420 3.4127 -0.9967 34 1 3.7801 3.3883 0.7777 35 1 6.0340 2.4655 0.6416 36 1 5.8968 2.2903 -1.1244 37 1 5.7965 4.9234 0.4163 38 1 7.1813 4.3261 -0.5287 39 1 5.6592 4.7483 -1.3497 40 1 4.9206 1.1655 2.9261 41 1 4.6601 2.5818 1.8800 42 1 3.6579 3.8829 5.1334 43 1 5.9753 -0.1437 1.5806 44 1 6.0548 0.9112 0.1490 45 1 5.5264 0.0784 -2.0281 46 1 5.2056 -1.8786 -3.4878 47 1 4.7610 -4.0905 -2.5015 48 1 4.6273 -4.3437 -0.0559 49 1 4.9572 -2.3885 1.4041 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257334984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:22 Heat of formation + Delta-G solvation = 8.019366 kcal Electronic energy + Delta-G solvation = -24788.727228 eV Core-core repulsion = 21714.896681 eV Total energy + Delta-G solvation = -3073.830547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80561 -39.27896 -35.31434 -34.90606 -34.42177 -32.37915 -31.66575 -30.51688 -28.91405 -27.22364 -25.89746 -24.22659 -23.38497 -22.97034 -21.89454 -21.43991 -20.21436 -18.56483 -17.44913 -17.36541 -16.63668 -16.07174 -15.92075 -15.71943 -15.28267 -15.03216 -14.88159 -14.42254 -14.14942 -14.07061 -13.84402 -13.68282 -13.39587 -13.19565 -13.06354 -12.88046 -12.85348 -12.61401 -12.48678 -12.33497 -12.16146 -12.03292 -11.97775 -11.74851 -11.56932 -11.48543 -11.32438 -11.05616 -10.97576 -10.70144 -10.44145 -9.66634 -9.50682 -8.62794 -8.06941 -6.11259 0.59376 0.64297 1.39090 1.42082 1.52901 2.45192 2.97786 3.24588 3.58675 3.91948 4.03202 4.09275 4.15885 4.26846 4.30765 4.38027 4.40099 4.44436 4.47408 4.56038 4.60041 4.73516 4.78638 4.83853 4.88068 4.91283 4.98804 5.01905 5.04585 5.14694 5.17195 5.21769 5.26098 5.28696 5.29705 5.34411 5.40196 5.48710 5.52280 5.67045 5.68549 5.73456 5.73885 5.79242 5.91973 5.95880 6.25415 6.29350 6.61964 6.83970 7.05775 7.55050 9.02111 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.006032 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.652788 B = 4640.608994 C = 5366.372639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.119 4.119 4 C 0.102 3.898 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.145 4.145 8 N -0.519 5.519 9 C 0.194 3.806 10 C -0.494 4.494 11 H 0.075 0.925 12 C 0.003 3.997 13 N -0.936 5.936 14 Si 0.945 3.055 15 H -0.263 1.263 16 H -0.287 1.287 17 H -0.284 1.284 18 C 0.071 3.929 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.118 4.118 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.065 0.935 40 H -0.018 1.018 41 H 0.009 0.991 42 H 0.257 0.743 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.123 0.877 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.134 0.866 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 -7.945 -15.042 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.156 4.156 4 C -0.007 4.007 5 C -0.185 4.185 6 C -0.159 4.159 7 C -0.202 4.202 8 N -0.243 5.243 9 C 0.068 3.932 10 C -0.532 4.532 11 H 0.093 0.907 12 C -0.194 4.194 13 N -0.578 5.578 14 Si 0.772 3.228 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.210 1.210 18 C -0.056 4.056 19 C -0.071 4.071 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.137 4.137 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.000 1.000 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.141 0.859 46 H 0.160 0.840 47 H 0.161 0.839 48 H 0.152 0.848 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.423 -8.211 -14.769 16.958 hybrid contribution -0.107 1.168 1.195 1.675 sum 1.316 -7.043 -13.573 15.348 Atomic orbital electron populations 1.21758 0.96174 1.01332 1.01110 1.21150 0.94816 0.96610 1.00781 1.21854 0.94640 0.97230 1.01917 1.21557 0.94801 0.91326 0.92976 1.22184 0.95813 0.98983 1.01501 1.21765 0.95680 0.97664 1.00838 1.21724 1.01090 0.96130 1.01257 1.62192 1.21051 1.35919 1.05104 1.19709 0.95773 0.90714 0.86955 1.21716 0.95253 1.23759 1.12504 0.90679 1.25691 0.99523 0.96397 0.97795 1.70086 1.31126 1.31014 1.25595 0.85686 0.81262 0.77666 0.78204 1.18741 1.21296 1.21025 1.21446 0.92038 0.94585 0.97565 1.19845 0.98763 0.94337 0.94163 1.21158 1.01087 0.99404 0.92608 1.21366 0.99631 0.92518 1.00533 1.21393 1.00164 0.98191 0.94942 1.21344 1.00085 0.98685 0.94273 1.21096 0.99830 0.93013 0.99767 0.94456 0.92092 0.92409 0.93048 0.93467 0.91438 0.92486 0.90578 0.91502 0.93101 0.93426 0.90980 0.94713 0.91890 0.91596 1.00026 0.97378 0.93397 0.92903 0.92096 0.85911 0.83977 0.83879 0.84779 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.91 71.98 0.71 -3.64 16 2 C -0.10 -3.27 5.51 30.59 0.17 -3.11 16 3 C -0.12 -4.34 4.24 30.59 0.13 -4.21 16 4 C 0.10 3.65 1.88 44.92 0.08 3.74 16 5 C -0.15 -5.25 4.15 30.60 0.13 -5.13 16 6 C -0.12 -3.93 3.92 30.59 0.12 -3.81 16 7 C -0.14 -4.16 9.91 71.98 0.71 -3.44 16 8 N -0.52 -21.03 3.65 -880.06 -3.21 -24.24 16 9 C 0.19 9.78 3.81 85.55 0.33 10.11 16 10 C -0.49 -26.70 7.36 25.60 0.19 -26.51 16 11 H 0.08 4.02 5.31 -2.91 -0.02 4.00 16 12 C 0.00 0.15 5.46 84.65 0.46 0.62 16 13 N -0.94 -55.79 13.29 21.45 0.28 -55.50 16 14 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 18 C 0.07 2.53 4.55 85.56 0.39 2.92 16 19 C -0.07 -2.16 5.05 -19.86 -0.10 -2.26 16 20 C -0.12 -3.21 8.29 22.27 0.18 -3.03 16 21 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 22 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 23 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 24 C -0.12 -3.54 9.72 22.27 0.22 -3.32 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.88 7.65 -2.39 -0.02 1.87 16 30 H 0.07 2.96 4.80 -2.38 -0.01 2.95 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.47 5.58 -2.39 -0.01 2.45 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 2.29 5.96 -2.39 -0.01 2.28 16 35 H 0.05 1.78 4.77 -2.38 -0.01 1.77 16 36 H 0.07 1.98 7.55 -2.39 -0.02 1.96 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H -0.02 -1.04 7.65 -2.39 -0.02 -1.06 16 41 H 0.01 0.46 4.08 -2.38 -0.01 0.45 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.05 2.03 7.63 -2.39 -0.02 2.01 16 44 H 0.06 2.04 4.01 -2.39 -0.01 2.03 16 45 H 0.12 2.91 7.63 -2.91 -0.02 2.88 16 46 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 47 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 48 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 49 H 0.11 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -60.98 368.12 4.39 -56.58 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.90 Total: 25.41 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 4.39 Total: -48.83 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.93 Total: -79.75 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -60.98 4.39 -56.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257334984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.601 kcal (2) G-P(sol) polarization free energy of solvation -60.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds