Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.52991 * 109.47293 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47379 * 184.43720 * 4 3 2 6 6 H 1.09003 * 109.47109 * 305.97812 * 5 4 3 7 7 C 1.52993 * 109.47530 * 185.97704 * 5 4 3 8 8 C 1.53003 * 109.47573 * 175.91478 * 7 5 4 9 9 N 1.46901 * 109.47152 * 65.97322 * 5 4 3 10 10 C 1.46892 * 111.00305 * 204.71781 * 9 5 4 11 11 C 1.50709 * 109.46964 * 77.88534 * 10 9 5 12 12 H 1.07999 * 119.99714 * 5.02775 * 11 10 9 13 13 C 1.37879 * 119.99839 * 185.03607 * 11 10 9 14 14 N 1.31509 * 120.00282 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99771 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46938 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47321 * 119.99736 * 15 13 11 18 18 H 1.48505 * 109.46618 * 239.99880 * 15 13 11 19 19 C 1.46901 * 110.99862 * 80.76554 * 9 5 4 20 20 C 1.50704 * 109.47340 * 197.36856 * 19 9 5 21 21 C 1.38227 * 120.00096 * 264.71771 * 20 19 9 22 22 C 1.38238 * 120.00141 * 179.76566 * 21 20 19 23 23 C 1.38239 * 119.99503 * 0.50263 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.75174 * 23 22 21 25 25 C 1.38231 * 119.99640 * 84.98920 * 20 19 9 26 26 H 1.08998 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47029 * 299.99647 * 1 2 3 28 28 H 1.08996 * 109.47269 * 59.99692 * 1 2 3 29 29 H 1.09000 * 109.47029 * 240.00353 * 2 1 3 30 30 H 1.08996 * 109.47269 * 120.00308 * 2 1 3 31 31 H 1.09007 * 109.47122 * 60.00042 * 3 2 1 32 32 H 1.09000 * 109.47611 * 300.00636 * 3 2 1 33 33 H 1.08997 * 109.47250 * 64.43667 * 4 3 2 34 34 H 1.08998 * 109.47286 * 304.43677 * 4 3 2 35 35 H 1.09001 * 109.47087 * 55.91310 * 7 5 4 36 36 H 1.09009 * 109.46994 * 295.91674 * 7 5 4 37 37 H 1.09004 * 109.46734 * 311.59615 * 8 7 5 38 38 H 1.08998 * 109.47360 * 191.59123 * 8 7 5 39 39 H 1.09002 * 109.46884 * 71.59420 * 8 7 5 40 40 H 1.09000 * 109.47360 * 197.88293 * 10 9 5 41 41 H 1.08998 * 109.47319 * 317.88654 * 10 9 5 42 42 H 0.96997 * 120.00072 * 180.02562 * 14 13 11 43 43 H 1.09003 * 109.47172 * 317.37338 * 19 9 5 44 44 H 1.08997 * 109.46951 * 77.37028 * 19 9 5 45 45 H 1.07999 * 120.00014 * 359.97438 * 21 20 19 46 46 H 1.07991 * 120.00189 * 180.23197 * 22 21 20 47 47 H 1.07997 * 119.99454 * 179.72284 * 23 22 21 48 48 H 1.07998 * 120.00126 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00477 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8806 0.1122 6 1 3.6323 3.4871 -0.6751 7 6 5.6026 2.8949 -0.0367 8 6 6.1026 4.3409 -0.0271 9 7 3.7110 3.4307 1.4235 10 6 3.6362 4.8970 1.3772 11 6 2.3415 5.3136 0.7279 12 1 1.6084 4.5679 0.4579 13 6 2.0931 6.6467 0.4785 14 7 2.9856 7.5547 0.8077 15 14 0.4880 7.1631 -0.3256 16 1 -0.3402 5.9603 -0.5947 17 1 -0.2484 8.0787 0.5824 18 1 0.7772 7.8608 -1.6043 19 6 4.6469 2.9840 2.4640 20 6 4.0268 3.1942 3.8213 21 6 4.3040 4.3436 4.5374 22 6 3.7314 4.5386 5.7803 23 6 2.8896 3.5794 6.3117 24 6 2.6165 2.4275 5.5978 25 6 3.1851 2.2350 4.3526 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9989 -0.9262 34 1 3.9330 0.8614 0.8484 35 1 5.8800 2.4207 -0.9781 36 1 6.0538 2.3489 0.7920 37 1 5.5049 4.9365 -0.7172 38 1 7.1475 4.3661 -0.3363 39 1 6.0115 4.7501 0.9791 40 1 3.6789 5.2952 2.3909 41 1 4.4743 5.2855 0.7986 42 1 2.8107 8.4926 0.6326 43 1 4.8667 1.9254 2.3248 44 1 5.5701 3.5590 2.3934 45 1 4.9654 5.0908 4.1243 46 1 3.9450 5.4383 6.3381 47 1 2.4458 3.7297 7.2847 48 1 1.9592 1.6780 6.0131 49 1 2.9722 1.3347 3.7952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257417479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = 7.490402 kcal Electronic energy + Delta-G solvation = -24412.595833 eV Core-core repulsion = 21338.742349 eV Total energy + Delta-G solvation = -3073.853485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.24022 -37.87349 -34.94174 -32.77592 -32.31566 -30.45939 -30.35671 -30.01388 -27.25864 -25.83538 -24.25487 -22.36575 -22.14948 -21.36313 -20.81818 -20.36905 -18.76733 -16.43337 -16.33841 -15.70400 -14.93502 -14.77101 -14.42051 -14.35639 -13.98150 -13.85071 -13.40556 -13.20067 -12.93230 -12.57687 -12.39149 -12.16425 -11.97951 -11.85909 -11.64784 -11.57908 -11.38008 -11.11944 -10.91429 -10.76550 -10.63463 -10.58103 -10.51189 -10.40360 -10.22636 -10.02956 -9.91599 -9.82306 -9.59947 -9.10381 -8.43884 -8.30247 -8.20184 -6.99716 -5.93917 -3.92295 1.85271 1.89853 3.33983 3.42035 3.46883 4.23308 4.50365 5.05551 5.10250 5.29642 5.32539 5.34332 5.41449 5.43943 5.49063 5.54725 5.57765 5.63980 5.72464 5.81538 5.85979 5.97476 6.02029 6.08374 6.08729 6.12078 6.15966 6.20479 6.29174 6.37086 6.40476 6.46851 6.47393 6.51666 6.53290 6.62944 6.72028 6.87709 6.92273 6.95715 6.96949 7.08029 7.18172 7.37387 7.50260 7.53638 7.93829 8.24562 8.32798 8.66410 9.16084 9.70375 11.16080 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.007336 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.699290 B = 3816.121450 C = 4898.593370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.102 4.102 5 C 0.088 3.912 6 H 0.089 0.911 7 C -0.151 4.151 8 C -0.153 4.153 9 N -0.516 5.516 10 C 0.167 3.833 11 C -0.492 4.492 12 H 0.061 0.939 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.287 1.287 19 C 0.088 3.912 20 C -0.056 4.056 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.101 4.101 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.036 0.964 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -12.073 3.671 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.021 4.021 6 H 0.107 0.893 7 C -0.190 4.190 8 C -0.210 4.210 9 N -0.240 5.240 10 C 0.042 3.958 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.039 4.039 20 C -0.057 4.057 21 C -0.121 4.121 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.119 4.119 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.385 -12.055 3.769 12.853 hybrid contribution -0.189 0.889 -0.639 1.111 sum 2.196 -11.166 3.130 11.802 Atomic orbital electron populations 1.21760 0.96487 1.00583 1.02005 1.21548 0.95413 0.98200 1.00825 1.21505 0.95151 0.94871 1.03428 1.21554 0.96094 0.96442 0.99891 1.21726 0.91616 0.95264 0.93529 0.89329 1.22259 0.98397 0.97353 1.01007 1.22049 0.99279 0.96608 1.03039 1.62257 1.45875 1.13901 1.01961 1.20275 0.97632 0.80227 0.97662 1.21226 1.02458 0.91652 1.37758 0.92050 1.24928 0.96607 0.96761 0.96343 1.69950 1.34538 1.00884 1.48792 0.86586 0.84216 0.78558 0.78945 1.19741 1.21272 1.21342 1.21076 0.93849 0.99528 0.89476 1.19856 0.96674 0.93887 0.95240 1.21088 1.00056 0.96685 0.94318 1.21038 0.98083 0.98777 0.96163 1.20986 0.99411 0.94772 0.99804 1.21014 1.00411 0.97742 0.95460 1.20902 0.96730 0.99291 0.94994 0.93637 0.92625 0.92980 0.93081 0.92711 0.89918 0.92693 0.93252 0.92954 0.92781 0.92403 0.91658 0.94389 0.91741 0.95384 0.95802 0.93289 0.91533 0.94592 0.86425 0.86745 0.86987 0.86902 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.59 5.93 -26.73 -0.16 -1.75 16 3 C -0.11 -1.76 5.16 -26.74 -0.14 -1.90 16 4 C -0.10 -1.54 4.76 -26.73 -0.13 -1.66 16 5 C 0.09 1.56 1.78 -67.71 -0.12 1.44 16 6 H 0.09 1.83 7.32 -51.93 -0.38 1.45 16 7 C -0.15 -2.39 4.89 -26.73 -0.13 -2.52 16 8 C -0.15 -2.66 8.10 37.16 0.30 -2.36 16 9 N -0.52 -10.18 3.62 -229.52 -0.83 -11.01 16 10 C 0.17 4.04 3.97 -4.98 -0.02 4.02 16 11 C -0.49 -13.40 8.64 -34.44 -0.30 -13.69 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C 0.09 1.53 3.51 -4.97 -0.02 1.52 16 20 C -0.06 -0.99 5.02 -104.63 -0.53 -1.51 16 21 C -0.10 -1.83 8.25 -39.59 -0.33 -2.16 16 22 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 25 C -0.10 -1.62 9.72 -39.58 -0.38 -2.01 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.52 7.67 -51.93 -0.40 1.12 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.76 6.98 -51.93 -0.36 0.39 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.86 6.10 -51.92 -0.32 0.54 16 37 H 0.06 1.28 7.46 -51.93 -0.39 0.90 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.22 4.85 -51.93 -0.25 0.97 16 40 H 0.03 0.74 5.71 -51.93 -0.30 0.44 16 41 H 0.02 0.61 3.93 -51.93 -0.20 0.41 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 44 H 0.04 0.63 5.69 -51.93 -0.30 0.34 16 45 H 0.12 2.12 7.75 -52.49 -0.41 1.72 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 48 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -28.47 374.25 -11.00 -39.47 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.66 Total: 4.39 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.87 Total: -29.70 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.09 Total: -36.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.47 -11.00 -39.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257417479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.962 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds