Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.52991 * 109.47293 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47379 * 184.43720 * 4 3 2 6 6 H 1.09003 * 109.47109 * 305.97812 * 5 4 3 7 7 C 1.52993 * 109.47530 * 185.97704 * 5 4 3 8 8 C 1.53003 * 109.47573 * 175.91478 * 7 5 4 9 9 N 1.46901 * 109.47152 * 65.97322 * 5 4 3 10 10 C 1.46892 * 111.00305 * 204.71781 * 9 5 4 11 11 C 1.50709 * 109.46964 * 77.88534 * 10 9 5 12 12 H 1.07999 * 119.99714 * 5.02775 * 11 10 9 13 13 C 1.37879 * 119.99839 * 185.03607 * 11 10 9 14 14 N 1.31509 * 120.00282 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99771 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46938 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47321 * 119.99736 * 15 13 11 18 18 H 1.48505 * 109.46618 * 239.99880 * 15 13 11 19 19 C 1.46901 * 110.99862 * 80.76554 * 9 5 4 20 20 C 1.50704 * 109.47340 * 197.36856 * 19 9 5 21 21 C 1.38227 * 120.00096 * 264.71771 * 20 19 9 22 22 C 1.38238 * 120.00141 * 179.76566 * 21 20 19 23 23 C 1.38239 * 119.99503 * 0.50263 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.75174 * 23 22 21 25 25 C 1.38231 * 119.99640 * 84.98920 * 20 19 9 26 26 H 1.08998 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47029 * 299.99647 * 1 2 3 28 28 H 1.08996 * 109.47269 * 59.99692 * 1 2 3 29 29 H 1.09000 * 109.47029 * 240.00353 * 2 1 3 30 30 H 1.08996 * 109.47269 * 120.00308 * 2 1 3 31 31 H 1.09007 * 109.47122 * 60.00042 * 3 2 1 32 32 H 1.09000 * 109.47611 * 300.00636 * 3 2 1 33 33 H 1.08997 * 109.47250 * 64.43667 * 4 3 2 34 34 H 1.08998 * 109.47286 * 304.43677 * 4 3 2 35 35 H 1.09001 * 109.47087 * 55.91310 * 7 5 4 36 36 H 1.09009 * 109.46994 * 295.91674 * 7 5 4 37 37 H 1.09004 * 109.46734 * 311.59615 * 8 7 5 38 38 H 1.08998 * 109.47360 * 191.59123 * 8 7 5 39 39 H 1.09002 * 109.46884 * 71.59420 * 8 7 5 40 40 H 1.09000 * 109.47360 * 197.88293 * 10 9 5 41 41 H 1.08998 * 109.47319 * 317.88654 * 10 9 5 42 42 H 0.96997 * 120.00072 * 180.02562 * 14 13 11 43 43 H 1.09003 * 109.47172 * 317.37338 * 19 9 5 44 44 H 1.08997 * 109.46951 * 77.37028 * 19 9 5 45 45 H 1.07999 * 120.00014 * 359.97438 * 21 20 19 46 46 H 1.07991 * 120.00189 * 180.23197 * 22 21 20 47 47 H 1.07997 * 119.99454 * 179.72284 * 23 22 21 48 48 H 1.07998 * 120.00126 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00477 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8806 0.1122 6 1 3.6323 3.4871 -0.6751 7 6 5.6026 2.8949 -0.0367 8 6 6.1026 4.3409 -0.0271 9 7 3.7110 3.4307 1.4235 10 6 3.6362 4.8970 1.3772 11 6 2.3415 5.3136 0.7279 12 1 1.6084 4.5679 0.4579 13 6 2.0931 6.6467 0.4785 14 7 2.9856 7.5547 0.8077 15 14 0.4880 7.1631 -0.3256 16 1 -0.3402 5.9603 -0.5947 17 1 -0.2484 8.0787 0.5824 18 1 0.7772 7.8608 -1.6043 19 6 4.6469 2.9840 2.4640 20 6 4.0268 3.1942 3.8213 21 6 4.3040 4.3436 4.5374 22 6 3.7314 4.5386 5.7803 23 6 2.8896 3.5794 6.3117 24 6 2.6165 2.4275 5.5978 25 6 3.1851 2.2350 4.3526 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9989 -0.9262 34 1 3.9330 0.8614 0.8484 35 1 5.8800 2.4207 -0.9781 36 1 6.0538 2.3489 0.7920 37 1 5.5049 4.9365 -0.7172 38 1 7.1475 4.3661 -0.3363 39 1 6.0115 4.7501 0.9791 40 1 3.6789 5.2952 2.3909 41 1 4.4743 5.2855 0.7986 42 1 2.8107 8.4926 0.6326 43 1 4.8667 1.9254 2.3248 44 1 5.5701 3.5590 2.3934 45 1 4.9654 5.0908 4.1243 46 1 3.9450 5.4383 6.3381 47 1 2.4458 3.7297 7.2847 48 1 1.9592 1.6780 6.0131 49 1 2.9722 1.3347 3.7952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257417479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -5.244720 kcal Electronic energy + Delta-G solvation = -24413.148070 eV Core-core repulsion = 21338.742349 eV Total energy + Delta-G solvation = -3074.405721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62248 -39.21522 -36.16449 -34.78564 -33.70657 -31.77176 -31.70757 -31.38710 -29.02425 -27.13624 -25.98174 -23.70427 -23.40855 -22.95491 -22.14798 -21.55750 -20.22001 -18.41505 -17.74445 -17.05976 -16.57037 -16.13466 -15.89355 -15.78370 -15.37951 -15.29355 -14.69810 -14.47946 -14.16314 -14.05315 -13.83170 -13.54776 -13.45310 -13.29239 -13.21132 -12.94095 -12.87093 -12.70912 -12.49918 -12.39578 -11.97121 -11.92335 -11.81566 -11.77129 -11.73721 -11.61718 -11.26768 -11.25236 -11.11987 -10.97684 -10.48189 -9.66567 -9.48785 -8.63228 -8.08919 -6.15101 0.59323 0.64061 1.36212 1.38261 1.50011 2.42836 2.95969 3.21815 3.59674 3.84077 4.04510 4.08506 4.21921 4.25848 4.28939 4.31624 4.36491 4.36781 4.45683 4.53688 4.61349 4.67440 4.78345 4.82578 4.83862 4.90081 4.92176 5.03131 5.04056 5.12516 5.14726 5.23287 5.25237 5.27260 5.29070 5.35556 5.39148 5.48682 5.52422 5.58925 5.63893 5.69272 5.71527 5.78919 5.80668 5.90635 6.25440 6.27917 6.62629 6.83174 7.02909 7.51824 8.98888 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.007336 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.699290 B = 3816.121450 C = 4898.593370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.092 4.092 5 C 0.085 3.915 6 H 0.051 0.949 7 C -0.143 4.143 8 C -0.146 4.146 9 N -0.518 5.518 10 C 0.183 3.817 11 C -0.499 4.499 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.094 3.906 20 C -0.077 4.077 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.109 4.109 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.002 0.998 41 H 0.010 0.990 42 H 0.258 0.742 43 H 0.091 0.909 44 H 0.028 0.972 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -14.760 4.004 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.146 4.146 4 C -0.130 4.130 5 C -0.023 4.023 6 H 0.069 0.931 7 C -0.182 4.182 8 C -0.203 4.203 9 N -0.241 5.241 10 C 0.057 3.943 11 C -0.538 4.538 12 H 0.070 0.930 13 C -0.194 4.194 14 N -0.575 5.575 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.207 1.207 19 C -0.034 4.034 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.127 4.127 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.161 0.839 48 H 0.163 0.837 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.818 -14.761 4.098 15.427 hybrid contribution -0.004 1.719 -0.701 1.857 sum 1.814 -13.042 3.396 13.599 Atomic orbital electron populations 1.21765 0.96268 1.01705 1.01160 1.21487 0.95611 0.96063 1.02093 1.21419 0.95734 0.96491 1.00936 1.21492 0.95469 0.94386 1.01643 1.21744 0.93000 0.96302 0.91288 0.93083 1.22195 0.96726 0.96314 1.02948 1.21928 1.00305 0.97340 1.00757 1.62148 1.47405 1.10878 1.03712 1.19900 0.95836 0.83279 0.95314 1.21514 1.03317 0.91607 1.37348 0.93032 1.25674 0.99666 0.96939 0.97094 1.70067 1.36281 1.01083 1.50092 0.85644 0.80562 0.78175 0.78141 1.19228 1.20993 1.20706 1.21084 0.92933 1.00507 0.88832 1.19976 0.97887 0.94519 0.95406 1.21125 1.01078 0.96899 0.95645 1.21302 0.98305 0.99920 0.95720 1.21378 0.98429 0.94142 1.00960 1.21425 0.99967 0.98310 0.94791 1.21137 0.96367 0.99380 0.95817 0.91496 0.93773 0.93601 0.91498 0.91596 0.93077 0.94586 0.90985 0.91425 0.90398 0.90640 0.94877 0.91906 0.94062 0.98007 0.97199 0.93292 0.89078 0.95367 0.88386 0.85420 0.83902 0.83723 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -2.71 5.93 30.59 0.18 -2.53 16 3 C -0.11 -3.32 5.16 30.59 0.16 -3.16 16 4 C -0.09 -2.61 4.76 30.59 0.15 -2.46 16 5 C 0.09 3.03 1.78 44.91 0.08 3.11 16 6 H 0.05 2.20 7.32 -2.39 -0.02 2.18 16 7 C -0.14 -4.36 4.89 30.59 0.15 -4.21 16 8 C -0.15 -5.21 8.10 71.98 0.58 -4.62 16 9 N -0.52 -20.92 3.62 -880.06 -3.18 -24.10 16 10 C 0.18 9.34 3.97 85.56 0.34 9.68 16 11 C -0.50 -28.30 8.64 25.60 0.22 -28.08 16 12 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 13 C 0.00 0.18 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 15 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 C 0.09 3.26 3.51 85.56 0.30 3.56 16 20 C -0.08 -2.74 5.02 -19.87 -0.10 -2.84 16 21 C -0.13 -4.76 8.25 22.27 0.18 -4.58 16 22 C -0.13 -4.31 10.05 22.27 0.22 -4.09 16 23 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 24 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.11 -3.35 9.72 22.27 0.22 -3.14 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.89 7.67 -2.38 -0.02 1.87 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.73 6.98 -2.39 -0.02 1.72 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.06 6.10 -2.38 -0.01 2.05 16 37 H 0.03 1.36 7.46 -2.38 -0.02 1.34 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.64 4.85 -2.39 -0.01 1.63 16 40 H 0.00 0.11 5.71 -2.39 -0.01 0.09 16 41 H 0.01 0.56 3.93 -2.39 -0.01 0.55 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.09 2.67 6.16 -2.39 -0.01 2.66 16 44 H 0.03 1.02 5.69 -2.39 -0.01 1.01 16 45 H 0.10 3.87 7.75 -2.91 -0.02 3.85 16 46 H 0.13 3.60 8.06 -2.92 -0.02 3.57 16 47 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 48 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 49 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -64.20 374.25 4.32 -59.88 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.89 Total: 24.79 kcal Atomic # 6 Polarization: -56.45 SS G_CDS: 4.31 Total: -52.14 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.90 Total: -80.32 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -64.20 4.32 -59.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257417479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.631 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds