Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47324 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47292 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47251 * 184.99120 * 5 4 3 7 7 H 1.08995 * 109.47108 * 55.56243 * 6 5 4 8 8 C 1.53002 * 109.47195 * 175.56724 * 6 5 4 9 9 N 1.46900 * 109.46977 * 295.56700 * 6 5 4 10 10 C 1.46903 * 110.99858 * 168.74882 * 9 6 5 11 11 C 1.50707 * 109.46893 * 292.34651 * 10 9 6 12 12 H 1.07992 * 119.99978 * 4.67204 * 11 10 9 13 13 C 1.37869 * 119.99926 * 184.66832 * 11 10 9 14 14 N 1.31516 * 120.00314 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00018 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47300 * 90.00043 * 15 13 11 17 17 H 1.48501 * 109.46907 * 210.00053 * 15 13 11 18 18 H 1.48494 * 109.47231 * 329.99903 * 15 13 11 19 19 C 1.46902 * 110.99898 * 292.69762 * 9 6 5 20 20 C 1.50699 * 109.47087 * 164.51551 * 19 9 6 21 21 C 1.38238 * 119.99567 * 275.08679 * 20 19 9 22 22 C 1.38244 * 119.99685 * 179.76928 * 21 20 19 23 23 C 1.38235 * 119.99871 * 0.50244 * 22 21 20 24 24 C 1.38229 * 120.00010 * 359.75096 * 23 22 21 25 25 C 1.38231 * 120.00327 * 95.36218 * 20 19 9 26 26 H 1.09001 * 109.47691 * 299.99987 * 1 2 3 27 27 H 1.08999 * 109.47242 * 59.99968 * 1 2 3 28 28 H 1.09001 * 109.47609 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46817 * 239.99751 * 2 1 3 30 30 H 1.09004 * 109.46574 * 120.00200 * 2 1 3 31 31 H 1.09004 * 109.47221 * 59.99363 * 3 2 1 32 32 H 1.09003 * 109.47462 * 300.00212 * 3 2 1 33 33 H 1.08996 * 109.47221 * 59.99479 * 4 3 2 34 34 H 1.09000 * 109.46792 * 299.99751 * 4 3 2 35 35 H 1.09001 * 109.46947 * 64.99532 * 5 4 3 36 36 H 1.08997 * 109.46891 * 304.99085 * 5 4 3 37 37 H 1.08992 * 109.46999 * 59.99788 * 8 6 5 38 38 H 1.09000 * 109.46766 * 299.99985 * 8 6 5 39 39 H 1.09000 * 109.47050 * 180.02562 * 8 6 5 40 40 H 1.08997 * 109.47437 * 52.34813 * 10 9 6 41 41 H 1.09005 * 109.47308 * 172.35003 * 10 9 6 42 42 H 0.96998 * 120.00359 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.47056 * 284.51235 * 19 9 6 44 44 H 1.08996 * 109.47221 * 44.51566 * 19 9 6 45 45 H 1.07999 * 120.00595 * 359.97438 * 21 20 19 46 46 H 1.07995 * 119.99677 * 180.23484 * 22 21 20 47 47 H 1.07998 * 119.99950 * 179.72739 * 23 22 21 48 48 H 1.07998 * 119.99936 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.00029 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6049 2.8866 -0.1249 7 1 5.8971 2.3302 -1.0154 8 6 6.1058 4.3280 -0.2367 9 7 6.1941 2.2542 1.0629 10 6 7.6268 1.9959 0.8657 11 6 7.8053 0.9345 -0.1891 12 1 6.9464 0.5498 -0.7188 13 6 9.0651 0.4546 -0.4780 14 7 9.2210 -0.4713 -1.3988 15 14 10.5507 1.1196 0.4388 16 1 10.7888 0.3016 1.6550 17 1 11.7447 1.0565 -0.4419 18 1 10.2996 2.5294 0.8318 19 6 5.9668 3.0718 2.2621 20 6 6.2331 2.2436 3.4926 21 6 5.2371 1.4382 4.0125 22 6 5.4828 0.6748 5.1385 23 6 6.7212 0.7247 5.7506 24 6 7.7155 1.5340 5.2338 25 6 7.4715 2.2935 4.1047 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8890 34 1 3.9329 0.9287 0.8909 35 1 3.7912 3.3728 0.9310 36 1 3.6459 3.4233 -0.8424 37 1 5.8135 4.8843 0.6538 38 1 5.6685 4.7972 -1.1180 39 1 7.1921 4.3292 -0.3261 40 1 8.1207 2.9132 0.5454 41 1 8.0668 1.6545 1.8028 42 1 10.1074 -0.8086 -1.6023 43 1 6.6387 3.9300 2.2494 44 1 4.9338 3.4192 2.2745 45 1 4.2680 1.4029 3.5371 46 1 4.7058 0.0428 5.5424 47 1 6.9118 0.1317 6.6328 48 1 8.6829 1.5733 5.7122 49 1 8.2483 2.9257 3.7009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257507994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = 0.856029 kcal Electronic energy + Delta-G solvation = -23912.112661 eV Core-core repulsion = 20837.971488 eV Total energy + Delta-G solvation = -3074.141173 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.24319 -37.74319 -35.59030 -32.86111 -32.41228 -30.99631 -30.54070 -29.40090 -27.51631 -26.13758 -24.62971 -22.54936 -22.11989 -21.27472 -20.93203 -20.60858 -18.62535 -16.65596 -16.47120 -15.87882 -15.16890 -14.96229 -14.62896 -14.33354 -14.03814 -13.76627 -13.42149 -13.28291 -13.08417 -12.96278 -12.66746 -12.38695 -12.30186 -12.14688 -11.95604 -11.60562 -11.54117 -11.38114 -11.11380 -10.79814 -10.71667 -10.63833 -10.60309 -10.56350 -10.29323 -10.16657 -10.00984 -9.83426 -9.75399 -9.17308 -8.57653 -8.48556 -8.34616 -7.27212 -6.01166 -3.96636 1.71709 1.76391 3.30196 3.37307 3.38486 4.10274 4.45224 4.88404 4.95522 5.11312 5.17163 5.22179 5.26557 5.31224 5.34661 5.43225 5.46184 5.56053 5.62401 5.70022 5.79733 5.83530 5.86616 5.91355 5.93390 5.96785 5.99275 6.05240 6.15317 6.24011 6.26133 6.31911 6.35035 6.39476 6.43078 6.44192 6.57372 6.66994 6.79075 6.81951 6.88224 6.96814 7.01553 7.02932 7.10607 7.35793 7.67744 7.97483 8.12285 8.70716 9.08015 9.61645 11.12147 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009697 B = 0.006166 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.892022 B = 4540.227331 C = 6024.215125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.107 4.107 6 C 0.084 3.916 7 H 0.098 0.902 8 C -0.183 4.183 9 N -0.508 5.508 10 C 0.158 3.842 11 C -0.501 4.501 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.269 1.269 19 C 0.084 3.916 20 C -0.058 4.058 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.112 4.112 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.059 0.941 40 H -0.012 1.012 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 6.263 8.832 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.025 4.025 7 H 0.116 0.884 8 C -0.242 4.242 9 N -0.231 5.231 10 C 0.032 3.968 11 C -0.539 4.539 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.697 3.303 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.044 4.044 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.005 0.995 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.730 5.702 8.793 15.730 hybrid contribution 1.502 0.951 0.288 1.800 sum -10.228 6.653 9.081 15.210 Atomic orbital electron populations 1.21782 0.96582 1.01132 1.01349 1.21534 0.95014 0.97539 1.02265 1.21646 0.96881 0.96066 1.00987 1.21465 0.92980 0.96823 1.03490 1.21647 0.95271 0.97060 1.00463 1.21705 0.93007 0.92342 0.95413 0.88394 1.22456 1.02151 0.98793 1.00781 1.62179 1.17454 1.43221 1.00240 1.20246 0.83537 0.95697 0.97351 1.21012 0.94407 1.19791 1.18694 0.90169 1.24860 0.98519 0.94785 0.95051 1.69889 1.22891 1.28973 1.32367 0.86945 0.83168 0.79955 0.80223 1.20163 1.21361 1.19395 1.21105 1.00536 0.93372 0.89388 1.19837 0.93441 0.97232 0.95350 1.20943 0.99224 0.95980 0.95490 1.21062 0.97030 0.99588 0.96586 1.21013 0.93860 0.99614 1.00278 1.21042 0.98849 0.97454 0.96815 1.21069 0.96504 0.99812 0.95661 0.93089 0.93084 0.93152 0.92024 0.92007 0.92790 0.92820 0.92058 0.90664 0.92842 0.92750 0.93447 0.93009 0.92238 0.99469 0.95353 0.92814 0.94940 0.90657 0.86277 0.86626 0.86777 0.86687 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.49 5.93 -26.74 -0.16 -1.65 16 3 C -0.12 -1.45 5.21 -26.74 -0.14 -1.59 16 4 C -0.11 -1.65 5.04 -26.73 -0.13 -1.79 16 5 C -0.11 -1.56 4.64 -26.73 -0.12 -1.68 16 6 C 0.08 1.50 2.18 -67.71 -0.15 1.35 16 7 H 0.10 2.06 6.66 -51.93 -0.35 1.72 16 8 C -0.18 -2.96 8.48 37.16 0.32 -2.64 16 9 N -0.51 -9.98 3.89 -229.52 -0.89 -10.88 16 10 C 0.16 3.73 3.52 -4.97 -0.02 3.71 16 11 C -0.50 -13.99 9.02 -34.44 -0.31 -14.30 16 12 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 15 Si 0.87 21.71 27.38 -169.99 -4.65 17.06 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.45 6.68 56.52 0.38 -6.07 16 19 C 0.08 1.40 3.81 -4.98 -0.02 1.38 16 20 C -0.06 -0.98 4.93 -104.62 -0.52 -1.49 16 21 C -0.10 -1.51 9.72 -39.58 -0.38 -1.90 16 22 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 24 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.11 -1.88 8.23 -39.58 -0.33 -2.20 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.26 7.88 -51.93 -0.41 0.85 16 35 H 0.05 0.73 6.18 -51.93 -0.32 0.41 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.69 6.67 -51.93 -0.35 0.35 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.08 6.60 -51.93 -0.34 0.73 16 40 H -0.01 -0.29 5.80 -51.93 -0.30 -0.60 16 41 H 0.03 0.69 5.19 -51.93 -0.27 0.42 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.03 0.54 7.03 -51.93 -0.36 0.18 16 44 H 0.08 1.12 5.93 -51.93 -0.31 0.81 16 45 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 49 H 0.11 1.90 8.00 -52.49 -0.42 1.48 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -29.82 377.64 -10.86 -40.68 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.89 Total: 3.00 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -2.88 Total: -28.68 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.12 Total: -37.76 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.65 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.82 -10.86 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257507994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.536 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds