Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47324 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47292 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47251 * 184.99120 * 5 4 3 7 7 H 1.08995 * 109.47108 * 55.56243 * 6 5 4 8 8 C 1.53002 * 109.47195 * 175.56724 * 6 5 4 9 9 N 1.46900 * 109.46977 * 295.56700 * 6 5 4 10 10 C 1.46903 * 110.99858 * 168.74882 * 9 6 5 11 11 C 1.50707 * 109.46893 * 292.34651 * 10 9 6 12 12 H 1.07992 * 119.99978 * 4.67204 * 11 10 9 13 13 C 1.37869 * 119.99926 * 184.66832 * 11 10 9 14 14 N 1.31516 * 120.00314 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00018 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47300 * 90.00043 * 15 13 11 17 17 H 1.48501 * 109.46907 * 210.00053 * 15 13 11 18 18 H 1.48494 * 109.47231 * 329.99903 * 15 13 11 19 19 C 1.46902 * 110.99898 * 292.69762 * 9 6 5 20 20 C 1.50699 * 109.47087 * 164.51551 * 19 9 6 21 21 C 1.38238 * 119.99567 * 275.08679 * 20 19 9 22 22 C 1.38244 * 119.99685 * 179.76928 * 21 20 19 23 23 C 1.38235 * 119.99871 * 0.50244 * 22 21 20 24 24 C 1.38229 * 120.00010 * 359.75096 * 23 22 21 25 25 C 1.38231 * 120.00327 * 95.36218 * 20 19 9 26 26 H 1.09001 * 109.47691 * 299.99987 * 1 2 3 27 27 H 1.08999 * 109.47242 * 59.99968 * 1 2 3 28 28 H 1.09001 * 109.47609 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46817 * 239.99751 * 2 1 3 30 30 H 1.09004 * 109.46574 * 120.00200 * 2 1 3 31 31 H 1.09004 * 109.47221 * 59.99363 * 3 2 1 32 32 H 1.09003 * 109.47462 * 300.00212 * 3 2 1 33 33 H 1.08996 * 109.47221 * 59.99479 * 4 3 2 34 34 H 1.09000 * 109.46792 * 299.99751 * 4 3 2 35 35 H 1.09001 * 109.46947 * 64.99532 * 5 4 3 36 36 H 1.08997 * 109.46891 * 304.99085 * 5 4 3 37 37 H 1.08992 * 109.46999 * 59.99788 * 8 6 5 38 38 H 1.09000 * 109.46766 * 299.99985 * 8 6 5 39 39 H 1.09000 * 109.47050 * 180.02562 * 8 6 5 40 40 H 1.08997 * 109.47437 * 52.34813 * 10 9 6 41 41 H 1.09005 * 109.47308 * 172.35003 * 10 9 6 42 42 H 0.96998 * 120.00359 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.47056 * 284.51235 * 19 9 6 44 44 H 1.08996 * 109.47221 * 44.51566 * 19 9 6 45 45 H 1.07999 * 120.00595 * 359.97438 * 21 20 19 46 46 H 1.07995 * 119.99677 * 180.23484 * 22 21 20 47 47 H 1.07998 * 119.99950 * 179.72739 * 23 22 21 48 48 H 1.07998 * 119.99936 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.00029 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6049 2.8866 -0.1249 7 1 5.8971 2.3302 -1.0154 8 6 6.1058 4.3280 -0.2367 9 7 6.1941 2.2542 1.0629 10 6 7.6268 1.9959 0.8657 11 6 7.8053 0.9345 -0.1891 12 1 6.9464 0.5498 -0.7188 13 6 9.0651 0.4546 -0.4780 14 7 9.2210 -0.4713 -1.3988 15 14 10.5507 1.1196 0.4388 16 1 10.7888 0.3016 1.6550 17 1 11.7447 1.0565 -0.4419 18 1 10.2996 2.5294 0.8318 19 6 5.9668 3.0718 2.2621 20 6 6.2331 2.2436 3.4926 21 6 5.2371 1.4382 4.0125 22 6 5.4828 0.6748 5.1385 23 6 6.7212 0.7247 5.7506 24 6 7.7155 1.5340 5.2338 25 6 7.4715 2.2935 4.1047 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8890 34 1 3.9329 0.9287 0.8909 35 1 3.7912 3.3728 0.9310 36 1 3.6459 3.4233 -0.8424 37 1 5.8135 4.8843 0.6538 38 1 5.6685 4.7972 -1.1180 39 1 7.1921 4.3292 -0.3261 40 1 8.1207 2.9132 0.5454 41 1 8.0668 1.6545 1.8028 42 1 10.1074 -0.8086 -1.6023 43 1 6.6387 3.9300 2.2494 44 1 4.9338 3.4192 2.2745 45 1 4.2680 1.4029 3.5371 46 1 4.7058 0.0428 5.5424 47 1 6.9118 0.1317 6.6328 48 1 8.6829 1.5733 5.7122 49 1 8.2483 2.9257 3.7009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257507994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -13.834358 kcal Electronic energy + Delta-G solvation = -23912.749684 eV Core-core repulsion = 20837.971488 eV Total energy + Delta-G solvation = -3074.778196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53248 -39.06573 -36.71868 -34.81821 -33.79203 -32.33380 -31.68303 -30.86795 -29.17526 -27.24513 -26.13184 -24.05919 -23.28882 -22.69071 -22.19364 -21.67896 -20.11953 -18.78273 -17.71547 -17.14816 -16.46913 -16.27630 -16.08933 -15.86013 -15.48524 -14.96677 -14.73079 -14.57148 -14.48082 -14.22585 -14.11534 -13.81045 -13.50583 -13.44328 -13.30297 -13.08280 -12.76658 -12.61561 -12.54574 -12.40144 -12.11016 -11.94889 -11.86766 -11.81727 -11.71238 -11.63877 -11.38519 -11.30551 -11.12419 -11.04349 -10.74884 -9.70849 -9.54557 -8.84000 -8.26398 -6.26344 0.54323 0.60330 1.30610 1.31118 1.41190 2.33168 2.89272 3.08180 3.46290 3.83692 3.99002 4.03886 4.13050 4.23017 4.23841 4.30988 4.33060 4.39938 4.45149 4.50120 4.58529 4.60922 4.72037 4.76260 4.80566 4.85536 4.86052 4.91121 4.98037 5.04131 5.07888 5.11205 5.19014 5.21567 5.22416 5.25734 5.32298 5.38797 5.44394 5.52438 5.58217 5.63752 5.66331 5.68424 5.73810 5.83344 6.07586 6.22253 6.51694 6.73312 6.79863 7.36020 8.90429 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009697 B = 0.006166 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.892022 B = 4540.227331 C = 6024.215125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.105 4.105 5 C -0.096 4.096 6 C 0.081 3.919 7 H 0.053 0.947 8 C -0.175 4.175 9 N -0.518 5.518 10 C 0.173 3.827 11 C -0.500 4.500 12 H 0.038 0.962 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.253 1.253 19 C 0.089 3.911 20 C -0.081 4.081 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.135 4.135 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.034 0.966 40 H -0.016 1.016 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.033 0.967 44 H 0.098 0.902 45 H 0.129 0.871 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.133 0.867 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.859 7.660 11.138 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.133 4.133 6 C -0.027 4.027 7 H 0.071 0.929 8 C -0.234 4.234 9 N -0.241 5.241 10 C 0.046 3.954 11 C -0.539 4.539 12 H 0.057 0.943 13 C -0.187 4.187 14 N -0.591 5.591 15 Si 0.760 3.240 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.177 1.177 19 C -0.038 4.038 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.153 4.153 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.001 0.999 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.116 0.884 45 H 0.146 0.854 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.151 0.849 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.974 7.117 11.108 18.503 hybrid contribution 1.801 0.448 -0.442 1.907 sum -11.173 7.565 10.667 17.200 Atomic orbital electron populations 1.21739 0.94649 1.01825 1.02153 1.21542 0.96711 0.97129 1.01253 1.21566 0.94278 0.96588 1.02191 1.21370 0.95283 0.96675 1.00904 1.21579 0.92493 0.97011 1.02252 1.21682 0.95299 0.92653 0.93075 0.92915 1.22369 1.00509 0.97768 1.02770 1.62050 1.14730 1.45244 1.02057 1.19907 0.86367 0.93820 0.95319 1.21251 0.93138 1.20363 1.19142 0.94345 1.25729 1.01864 0.95139 0.96008 1.70045 1.23749 1.30879 1.34408 0.85880 0.79076 0.80114 0.78939 1.19387 1.20850 1.17669 1.21133 1.01808 0.92921 0.87929 1.19949 0.94142 0.98345 0.95690 1.21160 0.99412 0.96009 0.96119 1.21440 0.97915 0.99202 0.95944 1.21410 0.93413 0.99107 1.00912 1.21350 1.00140 0.97207 0.96437 1.21205 0.96552 1.00774 0.96802 0.92063 0.92449 0.92607 0.93448 0.92769 0.91142 0.91834 0.95191 0.92792 0.90780 0.90859 0.91266 0.91074 0.94726 0.99882 0.95646 0.92709 0.94859 0.88394 0.85352 0.83931 0.83894 0.84868 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.92 16 2 C -0.13 -2.97 5.93 30.59 0.18 -2.79 16 3 C -0.11 -2.51 5.21 30.59 0.16 -2.35 16 4 C -0.10 -3.17 5.04 30.59 0.15 -3.02 16 5 C -0.10 -2.69 4.64 30.59 0.14 -2.55 16 6 C 0.08 2.95 2.18 44.92 0.10 3.04 16 7 H 0.05 2.38 6.66 -2.39 -0.02 2.36 16 8 C -0.18 -5.51 8.48 71.98 0.61 -4.90 16 9 N -0.52 -20.58 3.89 -880.05 -3.43 -24.01 16 10 C 0.17 8.34 3.52 85.56 0.30 8.65 16 11 C -0.50 -29.27 9.02 25.60 0.23 -29.04 16 12 H 0.04 2.51 7.37 -2.91 -0.02 2.48 16 13 C 0.01 0.55 5.47 84.65 0.46 1.02 16 14 N -0.95 -60.53 13.96 21.44 0.30 -60.23 16 15 Si 0.94 45.47 27.38 68.60 1.88 47.34 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.25 -11.51 6.68 99.48 0.66 -10.85 16 19 C 0.09 2.89 3.81 85.56 0.33 3.21 16 20 C -0.08 -2.64 4.93 -19.87 -0.10 -2.73 16 21 C -0.11 -3.18 9.72 22.27 0.22 -2.96 16 22 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 23 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 24 C -0.13 -3.79 10.05 22.27 0.22 -3.56 16 25 C -0.13 -4.39 8.23 22.27 0.18 -4.21 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.85 7.88 -2.39 -0.02 1.83 16 35 H 0.07 1.81 6.18 -2.39 -0.01 1.79 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.86 6.67 -2.39 -0.02 1.85 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.24 6.60 -2.39 -0.02 1.22 16 40 H -0.02 -0.80 5.80 -2.39 -0.01 -0.81 16 41 H 0.03 1.25 5.19 -2.38 -0.01 1.24 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.03 1.07 7.03 -2.39 -0.02 1.05 16 44 H 0.10 2.67 5.93 -2.39 -0.01 2.66 16 45 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 46 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 47 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 48 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 49 H 0.11 3.55 8.00 -2.91 -0.02 3.52 16 Total: -1.00 -67.58 377.64 3.94 -63.65 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.84 Total: 23.50 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 4.35 Total: -50.25 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.13 Total: -84.24 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.34 kcal Total: -67.58 3.94 -63.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257507994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.811 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds