Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51265 * 120.88663 * 2 1 4 4 C 1.53151 * 108.57833 * 231.65026 * 3 2 1 5 5 H 1.09004 * 109.32550 * 185.90205 * 4 3 2 6 6 C 1.52844 * 109.63207 * 66.58901 * 4 3 2 7 7 C 1.53011 * 109.54104 * 298.56596 * 6 4 3 8 8 N 1.46890 * 109.50254 * 179.57629 * 7 6 4 9 9 C 1.46900 * 111.00192 * 274.82482 * 8 7 6 10 10 H 1.08993 * 109.41529 * 35.13691 * 9 8 7 11 11 C 1.52955 * 109.41573 * 154.99739 * 9 8 7 12 12 C 1.53230 * 109.40686 * 183.62903 * 11 9 8 13 13 C 1.51264 * 108.54060 * 305.37674 * 12 11 9 14 14 C 1.37879 * 120.85152 * 231.32414 * 13 12 11 15 15 N 1.31510 * 120.00089 * 180.02562 * 14 13 12 16 16 Si 1.86805 * 119.99746 * 0.02562 * 14 13 12 17 17 H 1.48493 * 109.47163 * 90.00112 * 16 14 13 18 18 H 1.48500 * 109.46726 * 210.00295 * 16 14 13 19 19 H 1.48504 * 109.46927 * 329.99943 * 16 14 13 20 20 C 1.51270 * 118.29993 * 51.34019 * 13 12 11 21 21 C 1.53232 * 108.69741 * 308.56051 * 20 13 12 22 22 C 1.53011 * 109.29618 * 299.52837 * 7 6 4 23 23 C 1.52837 * 109.54010 * 60.47963 * 22 7 6 24 24 H 1.09004 * 109.32699 * 180.74086 * 23 22 7 25 25 C 1.51262 * 120.89161 * 180.02562 * 2 1 3 26 26 C 1.52816 * 109.94934 * 300.76594 * 23 22 7 27 27 H 1.07999 * 120.00164 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99346 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.62060 * 111.92493 * 3 2 1 30 30 H 1.08997 * 109.62073 * 351.38101 * 3 2 1 31 31 H 1.09002 * 109.45319 * 178.54687 * 6 4 3 32 32 H 1.08999 * 109.46105 * 58.59018 * 6 4 3 33 33 H 1.09007 * 109.52680 * 59.48642 * 7 6 4 34 34 H 1.00910 * 111.00024 * 38.77203 * 8 7 6 35 35 H 1.09007 * 109.48519 * 63.65497 * 11 9 8 36 36 H 1.09003 * 109.48614 * 303.61262 * 11 9 8 37 37 H 1.09001 * 109.62928 * 185.65483 * 12 11 9 38 38 H 1.09011 * 109.78008 * 65.18528 * 12 11 9 39 39 H 0.97004 * 120.00027 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.62532 * 68.37253 * 20 13 12 41 41 H 1.09001 * 109.62715 * 188.74940 * 20 13 12 42 42 H 1.08993 * 109.48218 * 174.70373 * 21 20 13 43 43 H 1.08997 * 109.48080 * 294.74309 * 21 20 13 44 44 H 1.08999 * 109.46249 * 180.50517 * 22 7 6 45 45 H 1.09003 * 109.45835 * 300.47335 * 22 7 6 46 46 H 1.08999 * 109.62152 * 8.62868 * 25 2 1 47 47 H 1.08999 * 109.62243 * 248.07884 * 25 2 1 48 48 H 1.09003 * 109.33256 * 178.31561 * 26 23 22 49 49 H 1.08997 * 109.33023 * 297.79519 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0866 1.2981 0.0000 4 6 3.1101 1.2545 -1.1385 5 1 3.7466 2.1378 -1.0854 6 6 2.3828 1.2484 -2.4828 7 6 1.5034 0.0003 -2.5833 8 7 0.7971 0.0004 -3.8712 9 6 -0.4422 0.7851 -3.7921 10 1 -0.2903 1.6362 -3.1283 11 6 -0.8151 1.2888 -5.1873 12 6 -2.0565 2.1819 -5.0913 13 6 -3.1533 1.4077 -4.3943 14 6 -4.4112 1.3080 -4.9500 15 7 -5.3525 0.6310 -4.3294 16 14 -4.7783 2.1345 -6.5846 17 1 -4.4851 1.1911 -7.6932 18 1 -6.2106 2.5238 -6.6316 19 1 -3.9312 3.3457 -6.7281 20 6 -2.8349 0.7459 -3.0718 21 6 -1.5669 -0.0983 -3.2377 22 6 2.3832 -1.2476 -2.4832 23 6 3.1102 -1.2540 -1.1388 24 1 3.7458 -2.1373 -1.0766 25 6 2.0867 -1.2980 -0.0006 26 6 3.9731 0.0003 -1.0068 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 2.6035 1.4154 0.9525 30 1 1.4033 2.1333 -0.1539 31 1 3.1141 1.2434 -3.2911 32 1 1.7597 2.1391 -2.5627 33 1 0.7774 -0.0003 -1.7702 34 1 1.3937 0.3404 -4.6108 35 1 -1.0282 0.4389 -5.8358 36 1 0.0144 1.8626 -5.6005 37 1 -2.3849 2.4613 -6.0924 38 1 -1.8217 3.0796 -4.5192 39 1 -6.2376 0.5612 -4.7201 40 1 -2.6698 1.5088 -2.3110 41 1 -3.6648 0.1052 -2.7738 42 1 -1.2722 -0.5056 -2.2707 43 1 -1.7624 -0.9153 -3.9322 44 1 1.7603 -2.1385 -2.5634 45 1 3.1146 -1.2419 -3.2913 46 1 1.4035 -2.1332 -0.1550 47 1 2.6035 -1.4158 0.9518 48 1 4.4632 0.0002 -0.0331 49 1 4.7316 0.0004 -1.7896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257888574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -9.913666 kcal Electronic energy + Delta-G solvation = -25043.461751 eV Core-core repulsion = 21968.853570 eV Total energy + Delta-G solvation = -3074.608182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80387 -37.27544 -34.50948 -33.36970 -32.72064 -31.70485 -29.50875 -29.02380 -26.25074 -26.15379 -25.91740 -21.99793 -21.74181 -21.44275 -20.75411 -19.24367 -18.98557 -17.78596 -16.05063 -15.71593 -14.81929 -14.58013 -14.46316 -14.34159 -14.22037 -13.96729 -13.42274 -13.19922 -12.98433 -12.70800 -12.55592 -12.41845 -12.10773 -11.93784 -11.82318 -11.49300 -11.27183 -11.07651 -10.89165 -10.79203 -10.78292 -10.69593 -10.57635 -10.44974 -10.18628 -9.93551 -9.87425 -9.76116 -9.39669 -8.79013 -8.53082 -8.39663 -8.27932 -7.70261 -6.02969 -3.92655 2.35911 3.30790 3.39058 3.40472 4.43847 4.50942 4.56712 4.60650 4.99631 5.08622 5.11793 5.17166 5.21541 5.26652 5.32260 5.48531 5.53341 5.58430 5.74474 5.81067 5.84664 5.87649 5.89134 5.95132 5.99245 6.03838 6.09525 6.10819 6.16060 6.23342 6.32402 6.40861 6.54977 6.60338 6.66251 6.78192 6.78646 6.92581 6.93971 7.00735 7.10708 7.12902 7.24197 7.49582 7.71822 7.83580 7.86846 7.95938 8.07886 8.48859 9.05538 9.62103 11.06773 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004442 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.068350 B = 6302.275471 C = 6640.483497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.082 4.082 4 C -0.079 4.079 5 H 0.065 0.935 6 C -0.140 4.140 7 C 0.046 3.954 8 N -0.685 5.685 9 C 0.105 3.895 10 H 0.028 0.972 11 C -0.108 4.108 12 C -0.013 4.013 13 C -0.483 4.483 14 C 0.074 3.926 15 N -0.891 5.891 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.268 1.268 20 C 0.010 3.990 21 C -0.091 4.091 22 C -0.097 4.097 23 C -0.083 4.083 24 H 0.068 0.932 25 C -0.081 4.081 26 C -0.106 4.106 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.324 0.676 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.013 0.987 39 H 0.263 0.737 40 H -0.002 1.002 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.477 -1.508 7.555 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.111 4.111 3 C -0.119 4.119 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.179 4.179 7 C -0.063 4.063 8 N -0.314 5.314 9 C -0.003 4.003 10 H 0.046 0.954 11 C -0.146 4.146 12 C -0.051 4.051 13 C -0.502 4.502 14 C -0.128 4.128 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.028 4.028 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.102 4.102 24 H 0.086 0.914 25 C -0.119 4.119 26 C -0.143 4.143 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.954 -2.179 7.637 18.722 hybrid contribution 0.126 1.379 -1.069 1.750 sum 17.080 -0.800 6.568 18.317 Atomic orbital electron populations 1.23662 0.94846 1.02641 1.01724 1.21675 0.94942 0.95686 0.98762 1.20853 0.97588 0.95205 0.98266 1.20962 0.96191 0.97721 0.94930 0.91644 1.22248 0.99104 1.00078 0.96484 1.22572 0.96540 0.92281 0.94882 1.60752 1.07163 1.58501 1.04987 1.21449 0.88764 0.93441 0.96687 0.95395 1.21747 0.97751 0.99526 0.95606 1.19720 0.93834 0.94929 0.96650 1.20043 0.94027 1.30924 1.05238 1.24836 0.95776 0.94951 0.97190 1.69841 1.03252 1.40916 1.38919 0.86692 0.76922 0.80366 0.84544 1.20453 1.21729 1.19366 1.19382 0.93539 0.94893 0.95008 1.21673 0.95472 0.98170 0.97629 1.21443 0.98039 0.98809 0.95235 1.21041 0.96229 0.97614 0.95317 0.91374 1.20858 0.97623 0.95106 0.98267 1.21422 0.97334 0.94314 1.01271 0.88115 0.88086 0.91197 0.91275 0.92628 0.92304 0.85859 0.85833 0.92360 0.95542 0.95336 0.96854 0.92730 0.98361 0.92654 0.95129 0.93091 0.91589 0.92813 0.91111 0.91298 0.92242 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 11.00 29.01 0.32 -2.28 16 2 C -0.11 -1.33 3.15 -100.52 -0.32 -1.65 16 3 C -0.08 -0.91 5.50 -27.53 -0.15 -1.06 16 4 C -0.08 -0.85 3.12 -90.72 -0.28 -1.14 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.14 -1.80 4.67 -26.81 -0.13 -1.93 16 7 C 0.05 0.66 1.93 -67.71 -0.13 0.53 16 8 N -0.69 -11.49 6.05 -99.55 -0.60 -12.09 16 9 C 0.11 2.07 2.21 -67.54 -0.15 1.92 16 10 H 0.03 0.57 7.12 -51.93 -0.37 0.20 16 11 C -0.11 -2.25 5.24 -26.64 -0.14 -2.39 16 12 C -0.01 -0.31 5.59 -27.49 -0.15 -0.47 16 13 C -0.48 -12.98 5.52 -98.92 -0.55 -13.53 16 14 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 15 N -0.89 -26.11 12.73 55.43 0.71 -25.41 16 16 Si 0.89 21.53 27.27 -169.99 -4.64 16.90 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.33 6.46 56.52 0.37 -5.96 16 20 C 0.01 0.25 5.95 -27.48 -0.16 0.08 16 21 C -0.09 -2.01 5.46 -26.41 -0.14 -2.15 16 22 C -0.10 -1.23 5.04 -26.81 -0.14 -1.37 16 23 C -0.08 -0.87 3.12 -90.73 -0.28 -1.15 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 C -0.08 -0.87 5.50 -27.54 -0.15 -1.02 16 26 C -0.11 -1.03 5.11 -26.92 -0.14 -1.17 16 27 H 0.10 1.43 7.92 -52.49 -0.42 1.02 16 28 H 0.10 1.37 7.92 -52.48 -0.42 0.96 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 31 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.06 0.84 7.43 -51.93 -0.39 0.46 16 33 H 0.12 1.88 1.94 -51.93 -0.10 1.78 16 34 H 0.32 5.11 8.04 -39.29 -0.32 4.79 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.03 0.48 8.05 -51.93 -0.42 0.07 16 37 H 0.03 0.67 4.78 -51.93 -0.25 0.42 16 38 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.05 1.55 7.07 -51.93 -0.37 1.18 16 42 H 0.03 0.62 6.33 -51.93 -0.33 0.29 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -28.02 346.83 -10.95 -38.97 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.85 Total: 3.19 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.79 Total: -26.78 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.10 Total: -37.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.64 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.02 -10.95 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257888574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.053 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds