Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51265 * 120.88663 * 2 1 4 4 C 1.53151 * 108.57833 * 231.65026 * 3 2 1 5 5 H 1.09004 * 109.32550 * 185.90205 * 4 3 2 6 6 C 1.52844 * 109.63207 * 66.58901 * 4 3 2 7 7 C 1.53011 * 109.54104 * 298.56596 * 6 4 3 8 8 N 1.46890 * 109.50254 * 179.57629 * 7 6 4 9 9 C 1.46900 * 111.00192 * 274.82482 * 8 7 6 10 10 H 1.08993 * 109.41529 * 35.13691 * 9 8 7 11 11 C 1.52955 * 109.41573 * 154.99739 * 9 8 7 12 12 C 1.53230 * 109.40686 * 183.62903 * 11 9 8 13 13 C 1.51264 * 108.54060 * 305.37674 * 12 11 9 14 14 C 1.37879 * 120.85152 * 231.32414 * 13 12 11 15 15 N 1.31510 * 120.00089 * 180.02562 * 14 13 12 16 16 Si 1.86805 * 119.99746 * 0.02562 * 14 13 12 17 17 H 1.48493 * 109.47163 * 90.00112 * 16 14 13 18 18 H 1.48500 * 109.46726 * 210.00295 * 16 14 13 19 19 H 1.48504 * 109.46927 * 329.99943 * 16 14 13 20 20 C 1.51270 * 118.29993 * 51.34019 * 13 12 11 21 21 C 1.53232 * 108.69741 * 308.56051 * 20 13 12 22 22 C 1.53011 * 109.29618 * 299.52837 * 7 6 4 23 23 C 1.52837 * 109.54010 * 60.47963 * 22 7 6 24 24 H 1.09004 * 109.32699 * 180.74086 * 23 22 7 25 25 C 1.51262 * 120.89161 * 180.02562 * 2 1 3 26 26 C 1.52816 * 109.94934 * 300.76594 * 23 22 7 27 27 H 1.07999 * 120.00164 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99346 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.62060 * 111.92493 * 3 2 1 30 30 H 1.08997 * 109.62073 * 351.38101 * 3 2 1 31 31 H 1.09002 * 109.45319 * 178.54687 * 6 4 3 32 32 H 1.08999 * 109.46105 * 58.59018 * 6 4 3 33 33 H 1.09007 * 109.52680 * 59.48642 * 7 6 4 34 34 H 1.00910 * 111.00024 * 38.77203 * 8 7 6 35 35 H 1.09007 * 109.48519 * 63.65497 * 11 9 8 36 36 H 1.09003 * 109.48614 * 303.61262 * 11 9 8 37 37 H 1.09001 * 109.62928 * 185.65483 * 12 11 9 38 38 H 1.09011 * 109.78008 * 65.18528 * 12 11 9 39 39 H 0.97004 * 120.00027 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.62532 * 68.37253 * 20 13 12 41 41 H 1.09001 * 109.62715 * 188.74940 * 20 13 12 42 42 H 1.08993 * 109.48218 * 174.70373 * 21 20 13 43 43 H 1.08997 * 109.48080 * 294.74309 * 21 20 13 44 44 H 1.08999 * 109.46249 * 180.50517 * 22 7 6 45 45 H 1.09003 * 109.45835 * 300.47335 * 22 7 6 46 46 H 1.08999 * 109.62152 * 8.62868 * 25 2 1 47 47 H 1.08999 * 109.62243 * 248.07884 * 25 2 1 48 48 H 1.09003 * 109.33256 * 178.31561 * 26 23 22 49 49 H 1.08997 * 109.33023 * 297.79519 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0866 1.2981 0.0000 4 6 3.1101 1.2545 -1.1385 5 1 3.7466 2.1378 -1.0854 6 6 2.3828 1.2484 -2.4828 7 6 1.5034 0.0003 -2.5833 8 7 0.7971 0.0004 -3.8712 9 6 -0.4422 0.7851 -3.7921 10 1 -0.2903 1.6362 -3.1283 11 6 -0.8151 1.2888 -5.1873 12 6 -2.0565 2.1819 -5.0913 13 6 -3.1533 1.4077 -4.3943 14 6 -4.4112 1.3080 -4.9500 15 7 -5.3525 0.6310 -4.3294 16 14 -4.7783 2.1345 -6.5846 17 1 -4.4851 1.1911 -7.6932 18 1 -6.2106 2.5238 -6.6316 19 1 -3.9312 3.3457 -6.7281 20 6 -2.8349 0.7459 -3.0718 21 6 -1.5669 -0.0983 -3.2377 22 6 2.3832 -1.2476 -2.4832 23 6 3.1102 -1.2540 -1.1388 24 1 3.7458 -2.1373 -1.0766 25 6 2.0867 -1.2980 -0.0006 26 6 3.9731 0.0003 -1.0068 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 2.6035 1.4154 0.9525 30 1 1.4033 2.1333 -0.1539 31 1 3.1141 1.2434 -3.2911 32 1 1.7597 2.1391 -2.5627 33 1 0.7774 -0.0003 -1.7702 34 1 1.3937 0.3404 -4.6108 35 1 -1.0282 0.4389 -5.8358 36 1 0.0144 1.8626 -5.6005 37 1 -2.3849 2.4613 -6.0924 38 1 -1.8217 3.0796 -4.5192 39 1 -6.2376 0.5612 -4.7201 40 1 -2.6698 1.5088 -2.3110 41 1 -3.6648 0.1052 -2.7738 42 1 -1.2722 -0.5056 -2.2707 43 1 -1.7624 -0.9153 -3.9322 44 1 1.7603 -2.1385 -2.5634 45 1 3.1146 -1.2419 -3.2913 46 1 1.4035 -2.1332 -0.1550 47 1 2.6035 -1.4158 0.9518 48 1 4.4632 0.0002 -0.0331 49 1 4.7316 0.0004 -1.7896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257888574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -24.319028 kcal Electronic energy + Delta-G solvation = -25044.086415 eV Core-core repulsion = 21968.853570 eV Total energy + Delta-G solvation = -3075.232845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77755 -38.94072 -35.98498 -34.57736 -33.60697 -33.43564 -31.41369 -30.49682 -27.67704 -27.09925 -27.04043 -23.67554 -23.47540 -22.35200 -22.17307 -20.85534 -20.21824 -18.72129 -18.01511 -16.83345 -16.37617 -16.10579 -15.59153 -15.53045 -15.27617 -15.05937 -14.84232 -14.67687 -14.32709 -14.21787 -14.00724 -13.80023 -13.53690 -13.33118 -13.07898 -12.83172 -12.69755 -12.57721 -12.38440 -12.23407 -12.00369 -11.90257 -11.78919 -11.77699 -11.73260 -11.45357 -11.33013 -10.99545 -10.84954 -10.64403 -10.53431 -10.44296 -9.30457 -9.07278 -8.15730 -6.09690 1.34959 1.37849 1.39495 1.48902 2.40903 3.08438 3.37067 3.68075 3.69705 4.04317 4.14879 4.15913 4.17639 4.23451 4.26594 4.34316 4.37934 4.57866 4.63494 4.65259 4.68868 4.78367 4.83704 4.89173 4.95449 4.99609 5.00694 5.05034 5.08355 5.10155 5.11517 5.16839 5.20404 5.20882 5.24463 5.28412 5.32862 5.42767 5.51437 5.55536 5.56782 5.61247 5.64969 5.79366 5.80836 5.92116 5.95342 6.38166 6.41399 6.75216 6.96815 7.47717 8.95604 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004442 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.068350 B = 6302.275471 C = 6640.483497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.093 4.093 3 C -0.085 4.085 4 C -0.076 4.076 5 H 0.082 0.918 6 C -0.136 4.136 7 C 0.038 3.962 8 N -0.687 5.687 9 C 0.120 3.880 10 H 0.021 0.979 11 C -0.103 4.103 12 C -0.016 4.016 13 C -0.497 4.497 14 C 0.018 3.982 15 N -0.934 5.934 16 Si 0.943 3.057 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.253 1.253 20 C 0.010 3.990 21 C -0.078 4.078 22 C -0.094 4.094 23 C -0.079 4.079 24 H 0.089 0.911 25 C -0.084 4.084 26 C -0.103 4.103 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.113 0.887 34 H 0.334 0.666 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.016 0.984 39 H 0.262 0.738 40 H -0.008 1.008 41 H 0.020 0.980 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.099 -1.009 7.237 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.095 4.095 5 H 0.100 0.900 6 C -0.175 4.175 7 C -0.070 4.070 8 N -0.317 5.317 9 C 0.011 3.989 10 H 0.039 0.961 11 C -0.141 4.141 12 C -0.054 4.054 13 C -0.516 4.516 14 C -0.180 4.180 15 N -0.574 5.574 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.218 1.218 19 H -0.177 1.177 20 C -0.028 4.028 21 C -0.116 4.116 22 C -0.132 4.132 23 C -0.097 4.097 24 H 0.107 0.893 25 C -0.121 4.121 26 C -0.140 4.140 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.010 0.990 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.608 -1.672 7.318 21.933 hybrid contribution -0.981 1.203 -0.884 1.786 sum 19.627 -0.469 6.435 20.660 Atomic orbital electron populations 1.23513 0.95762 1.01475 1.05225 1.21947 0.94463 0.97133 0.95739 1.20929 0.97582 0.93946 0.99764 1.20977 0.96071 0.99376 0.93064 0.89961 1.22182 0.98848 0.98105 0.98393 1.22692 0.96883 0.94253 0.93178 1.60634 1.06652 1.57695 1.06708 1.21100 0.89347 0.92693 0.95746 0.96111 1.21646 0.97465 0.98944 0.96069 1.19740 0.94137 0.95128 0.96364 1.20662 0.94977 1.30474 1.05517 1.25659 0.95813 0.95867 1.00649 1.69991 1.03676 1.43009 1.40744 0.85769 0.76780 0.79970 0.80558 1.19924 1.21833 1.17715 1.19316 0.94083 0.94606 0.94825 1.21449 0.95013 0.97270 0.97881 1.21410 0.97740 0.96899 0.97161 1.21045 0.96114 0.99237 0.93353 0.89310 1.20942 0.97646 0.93763 0.99741 1.21429 0.97004 0.92668 1.02892 0.89796 0.89009 0.88941 0.92675 0.91639 0.94177 0.86943 0.84721 0.93396 0.92310 0.94965 0.96553 0.92911 0.98960 0.96143 0.94065 0.95235 0.93260 0.92092 0.91936 0.88970 0.90197 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.25 11.00 67.77 0.75 -5.51 16 2 C -0.09 -2.13 3.15 -16.14 -0.05 -2.18 16 3 C -0.09 -1.71 5.50 30.08 0.17 -1.54 16 4 C -0.08 -1.38 3.12 -10.86 -0.03 -1.42 16 5 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 6 C -0.14 -3.18 4.67 30.55 0.14 -3.04 16 7 C 0.04 1.05 1.93 44.92 0.09 1.13 16 8 N -0.69 -22.17 6.05 -468.87 -2.84 -25.01 16 9 C 0.12 4.70 2.21 45.03 0.10 4.80 16 10 H 0.02 0.85 7.12 -2.39 -0.02 0.84 16 11 C -0.10 -4.15 5.24 30.66 0.16 -3.99 16 12 C -0.02 -0.73 5.59 30.10 0.17 -0.56 16 13 C -0.50 -27.23 5.52 -16.17 -0.09 -27.32 16 14 C 0.02 1.01 5.46 84.66 0.46 1.47 16 15 N -0.93 -56.89 12.73 21.45 0.27 -56.62 16 16 Si 0.94 44.48 27.27 68.60 1.87 46.35 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.25 -11.18 6.46 99.48 0.64 -10.54 16 20 C 0.01 0.52 5.95 30.11 0.18 0.70 16 21 C -0.08 -3.53 5.46 30.80 0.17 -3.36 16 22 C -0.09 -2.17 5.04 30.54 0.15 -2.01 16 23 C -0.08 -1.37 3.12 -10.86 -0.03 -1.40 16 24 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 25 C -0.08 -1.59 5.50 30.07 0.17 -1.43 16 26 C -0.10 -1.53 5.11 30.47 0.16 -1.37 16 27 H 0.08 2.57 7.92 -2.91 -0.02 2.55 16 28 H 0.09 2.67 7.92 -2.91 -0.02 2.64 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.26 7.89 -2.39 -0.02 1.24 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.04 1.08 7.43 -2.39 -0.02 1.07 16 33 H 0.11 3.39 1.94 -2.38 0.00 3.38 16 34 H 0.33 9.76 8.04 -89.69 -0.72 9.04 16 35 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 37 H 0.03 1.46 4.78 -2.39 -0.01 1.45 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.02 1.19 7.07 -2.39 -0.02 1.18 16 42 H 0.04 1.75 6.33 -2.39 -0.02 1.74 16 43 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.30 7.89 -2.39 -0.02 1.28 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.19 346.83 2.08 -60.12 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.13 Total: 22.21 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 2.65 Total: -47.04 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.57 Total: -81.63 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.87 Total: 46.35 kcal Total: -62.19 2.08 -60.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257888574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.796 kcal (2) G-P(sol) polarization free energy of solvation -62.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds