Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51271 * 120.88990 * 2 1 4 4 C 1.53148 * 108.58596 * 231.59992 * 3 2 1 5 5 H 1.09000 * 109.32493 * 185.92468 * 4 3 2 6 6 C 1.52845 * 109.63567 * 66.60946 * 4 3 2 7 7 C 1.53085 * 109.09202 * 299.36688 * 6 4 3 8 8 N 1.46898 * 109.08078 * 179.05265 * 7 6 4 9 9 C 1.46898 * 111.00068 * 274.02259 * 8 7 6 10 10 H 1.09004 * 109.41195 * 35.00620 * 9 8 7 11 11 C 1.52956 * 109.41457 * 154.86109 * 9 8 7 12 12 C 1.53231 * 109.40542 * 183.70680 * 11 9 8 13 13 C 1.51265 * 108.53831 * 305.37360 * 12 11 9 14 14 C 1.37877 * 120.85156 * 231.37297 * 13 12 11 15 15 N 1.31516 * 119.99677 * 348.82935 * 14 13 12 16 16 Si 1.86799 * 120.00269 * 168.83470 * 14 13 12 17 17 H 1.48498 * 109.47226 * 354.66007 * 16 14 13 18 18 H 1.48506 * 109.46845 * 114.65546 * 16 14 13 19 19 H 1.48499 * 109.47413 * 234.65826 * 16 14 13 20 20 C 1.51271 * 118.30066 * 51.34628 * 13 12 11 21 21 C 1.52963 * 109.41547 * 275.14568 * 9 8 7 22 22 C 1.53008 * 108.84930 * 298.48100 * 7 6 4 23 23 C 1.52841 * 109.55167 * 61.25154 * 22 7 6 24 24 H 1.08997 * 109.32910 * 180.76058 * 23 22 7 25 25 C 1.51269 * 120.88808 * 179.97438 * 2 1 3 26 26 C 1.52814 * 109.68117 * 305.79048 * 4 3 2 27 27 H 1.07994 * 120.00527 * 180.02562 * 1 2 3 28 28 H 1.08010 * 119.99774 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.61524 * 111.87068 * 3 2 1 30 30 H 1.08997 * 109.62036 * 351.33226 * 3 2 1 31 31 H 1.09000 * 109.46241 * 58.60135 * 6 4 3 32 32 H 1.08998 * 109.46373 * 178.56513 * 6 4 3 33 33 H 1.08995 * 110.39129 * 58.69287 * 7 6 4 34 34 H 1.00904 * 110.99809 * 150.07255 * 8 7 6 35 35 H 1.09001 * 109.48015 * 303.68736 * 11 9 8 36 36 H 1.08998 * 109.48543 * 63.71486 * 11 9 8 37 37 H 1.09003 * 109.62664 * 65.08745 * 12 11 9 38 38 H 1.09002 * 109.62351 * 185.46622 * 12 11 9 39 39 H 0.97004 * 120.00216 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.62608 * 68.37009 * 20 13 12 41 41 H 1.09004 * 109.62547 * 188.94518 * 20 13 12 42 42 H 1.08996 * 109.47943 * 296.26956 * 21 9 8 43 43 H 1.08996 * 109.47790 * 56.31334 * 21 9 8 44 44 H 1.08999 * 109.45949 * 301.22097 * 22 7 6 45 45 H 1.08996 * 109.44504 * 181.26615 * 22 7 6 46 46 H 1.08997 * 109.61851 * 8.65951 * 25 2 1 47 47 H 1.08999 * 109.77108 * 248.20242 * 25 2 1 48 48 H 1.08993 * 109.33043 * 182.82843 * 26 4 3 49 49 H 1.09006 * 109.32989 * 302.30607 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0867 1.2981 0.0000 4 6 3.1111 1.2541 -1.1376 5 1 3.7478 2.1372 -1.0841 6 6 2.3850 1.2480 -2.4826 7 6 1.4932 0.0064 -2.5646 8 7 0.7783 0.0126 -3.8478 9 6 -0.4607 0.7964 -3.7564 10 1 -0.3053 1.6430 -3.0876 11 6 -0.8414 1.3096 -5.1461 12 6 -2.0813 2.2033 -5.0368 13 6 -3.1747 1.4255 -4.3385 14 6 -4.4357 1.3298 -4.8879 15 7 -4.7675 2.0897 -5.9087 16 14 -5.6728 0.1211 -4.1822 17 1 -5.0188 -0.7001 -3.1319 18 1 -6.8114 0.8677 -3.5893 19 1 -6.1716 -0.7651 -5.2643 20 6 -2.8492 0.7547 -3.0223 21 6 -1.5818 -0.0870 -3.2063 22 6 2.3741 -1.2416 -2.4766 23 6 3.1106 -1.2544 -1.1374 24 1 3.7470 -2.1377 -1.0842 25 6 2.0866 -1.2981 0.0006 26 6 3.9737 -0.0003 -1.0051 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.6027 1.4158 0.9528 30 1 1.4036 2.1333 -0.1547 31 1 1.7623 2.1390 -2.5632 32 1 3.1168 1.2424 -3.2904 33 1 0.7728 0.0017 -1.7467 34 1 0.5889 -0.9278 -4.1607 35 1 -0.0137 1.8853 -5.5603 36 1 -1.0588 0.4642 -5.7989 37 1 -1.8400 3.0952 -4.4585 38 1 -2.4133 2.4923 -6.0340 39 1 -5.6545 2.0222 -6.2955 40 1 -2.6789 1.5125 -2.2575 41 1 -3.6765 0.1102 -2.7253 42 1 -1.7816 -0.8985 -3.9060 43 1 -1.2792 -0.5017 -2.2449 44 1 3.0996 -1.2320 -3.2900 45 1 1.7507 -2.1321 -2.5566 46 1 1.4035 -2.1333 -0.1536 47 1 2.6028 -1.4186 0.9530 48 1 4.7327 -0.0004 -1.7874 49 1 4.4632 -0.0003 -0.0311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257888575.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -5.856904 kcal Electronic energy + Delta-G solvation = -25088.736003 eV Core-core repulsion = 22014.303735 eV Total energy + Delta-G solvation = -3074.432267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85564 -37.32601 -34.43891 -33.44315 -32.76587 -31.68064 -29.61507 -28.92844 -26.33751 -26.21314 -25.84252 -22.12801 -21.62937 -21.27226 -20.85214 -19.27777 -19.04318 -17.89032 -16.16996 -15.53840 -14.93420 -14.73533 -14.44802 -14.39130 -14.23404 -13.95343 -13.26936 -13.21004 -12.98533 -12.72609 -12.56560 -12.27596 -12.14345 -12.01978 -11.94158 -11.52605 -11.23828 -11.18035 -10.89438 -10.86208 -10.77498 -10.72121 -10.72001 -10.45435 -10.07841 -9.93321 -9.80225 -9.66867 -9.34648 -8.89944 -8.74672 -8.41459 -8.31014 -7.42046 -6.05126 -3.92569 2.28757 3.28164 3.38079 3.38339 4.42809 4.51330 4.52616 4.56997 5.00517 5.03741 5.06094 5.14865 5.20694 5.23118 5.39753 5.46528 5.47457 5.56080 5.72819 5.79407 5.83909 5.84245 5.87499 5.93195 5.99909 6.02772 6.05816 6.12328 6.21118 6.23797 6.34953 6.40974 6.48834 6.56415 6.66070 6.70760 6.84565 6.88078 6.93559 6.98987 7.07436 7.18141 7.30607 7.49395 7.69898 7.81126 7.83896 7.96863 8.08854 8.48509 9.04594 9.61477 11.04675 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.004659 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.997513 B = 6008.701885 C = 6401.160872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.083 4.083 4 C -0.084 4.084 5 H 0.068 0.932 6 C -0.097 4.097 7 C 0.043 3.957 8 N -0.690 5.690 9 C 0.105 3.895 10 H 0.061 0.939 11 C -0.094 4.094 12 C 0.011 3.989 13 C -0.483 4.483 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.875 3.125 17 H -0.257 1.257 18 H -0.284 1.284 19 H -0.287 1.287 20 C -0.020 4.020 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.080 4.080 24 H 0.068 0.932 25 C -0.083 4.083 26 C -0.106 4.106 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.330 0.670 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.001 0.999 38 H 0.051 0.949 39 H 0.262 0.738 40 H 0.014 0.986 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.755 -5.791 11.353 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.102 4.102 3 C -0.120 4.120 4 C -0.103 4.103 5 H 0.087 0.913 6 C -0.135 4.135 7 C -0.066 4.066 8 N -0.319 5.319 9 C -0.004 4.004 10 H 0.079 0.921 11 C -0.133 4.133 12 C -0.027 4.027 13 C -0.502 4.502 14 C -0.127 4.127 15 N -0.526 5.526 16 Si 0.704 3.296 17 H -0.182 1.182 18 H -0.210 1.210 19 H -0.213 1.213 20 C -0.058 4.058 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.099 4.099 24 H 0.087 0.913 25 C -0.120 4.120 26 C -0.143 4.143 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.994 -5.218 10.940 20.068 hybrid contribution -1.369 -1.293 0.648 1.992 sum 14.624 -6.511 11.588 19.763 Atomic orbital electron populations 1.23593 0.94901 1.02390 1.02816 1.21673 0.94905 0.95780 0.97804 1.20870 0.97688 0.95032 0.98387 1.21066 0.96235 0.97682 0.95358 0.91345 1.21491 0.98275 0.98451 0.95257 1.22533 0.96486 0.93812 0.93748 1.60773 1.24486 1.18300 1.28387 1.21422 0.86055 0.94900 0.98043 0.92079 1.21591 0.97871 0.99379 0.94430 1.19359 0.91392 0.93400 0.98507 1.20056 0.95339 1.30524 1.04293 1.24840 0.97381 0.95528 0.94975 1.69911 1.20367 1.37755 1.24560 0.86802 0.81194 0.82402 0.79234 1.18221 1.21031 1.21317 1.19884 0.93786 0.95122 0.97037 1.22252 0.98406 0.98809 0.97775 1.21681 0.98944 0.97878 0.96562 1.20998 0.96153 0.97935 0.94826 0.91324 1.20873 0.97611 0.95010 0.98490 1.21419 0.97385 0.94196 1.01319 0.88496 0.88058 0.91243 0.91130 0.92267 0.91964 0.88614 0.85252 0.94753 0.93723 0.98062 0.93013 0.92814 0.96798 0.94560 0.93461 0.95157 0.91782 0.92649 0.91456 0.91166 0.91950 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.57 10.90 29.01 0.32 -2.25 16 2 C -0.10 -1.17 3.14 -100.51 -0.32 -1.49 16 3 C -0.08 -0.90 5.49 -27.53 -0.15 -1.05 16 4 C -0.08 -0.91 3.12 -90.72 -0.28 -1.20 16 5 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.10 -1.30 4.94 -26.77 -0.13 -1.43 16 7 C 0.04 0.60 1.95 -67.67 -0.13 0.47 16 8 N -0.69 -11.45 6.03 -99.74 -0.60 -12.06 16 9 C 0.10 2.04 2.18 -67.76 -0.15 1.90 16 10 H 0.06 1.26 7.14 -51.93 -0.37 0.89 16 11 C -0.09 -2.08 5.54 -26.63 -0.15 -2.23 16 12 C 0.01 0.29 5.92 -27.49 -0.16 0.13 16 13 C -0.48 -12.91 5.48 -98.92 -0.54 -13.45 16 14 C 0.07 2.08 5.44 -17.82 -0.10 1.99 16 15 N -0.89 -26.07 12.83 55.43 0.71 -25.36 16 16 Si 0.88 21.11 27.95 -169.99 -4.75 16.36 16 17 H -0.26 -5.93 5.58 56.52 0.32 -5.62 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.02 -0.48 5.66 -27.48 -0.16 -0.63 16 21 C -0.13 -2.71 5.17 -26.62 -0.14 -2.85 16 22 C -0.11 -1.35 4.68 -26.81 -0.13 -1.47 16 23 C -0.08 -0.80 3.15 -90.72 -0.29 -1.09 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 C -0.08 -0.84 5.49 -27.53 -0.15 -0.99 16 26 C -0.11 -1.01 5.12 -26.92 -0.14 -1.15 16 27 H 0.10 1.23 7.92 -52.49 -0.42 0.81 16 28 H 0.10 1.37 7.92 -52.48 -0.42 0.96 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 31 H 0.06 0.90 7.44 -51.93 -0.39 0.51 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.39 1.86 -51.93 -0.10 1.29 16 34 H 0.33 5.36 8.09 -39.29 -0.32 5.04 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 38 H 0.05 1.45 7.20 -51.93 -0.37 1.08 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.04 0.86 4.36 -51.93 -0.23 0.63 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.55 6.26 -51.93 -0.33 0.23 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 46 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -27.95 346.21 -11.10 -39.05 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.89 Total: 3.58 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.79 Total: -26.80 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.11 Total: -37.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.75 Total: 16.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.95 -11.10 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257888575.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.191 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds